Flemming H-C, Wingender J, Szewzyk U, Steinberg P, Rice SA, Kjelleberg S. Biofilms: an emergent form of bacterial life. Nat Rev Microbiol. 2016;14:563–75.
Google Scholar
Nadell CD, Xavier JB, Foster KR. The sociobiology of biofilms. FEMS Microbiol Rev. 2009;33:206–24.
Google Scholar
Rumbaugh KP, Sauer K. Biofilm dispersion. Nat Rev Microbiol. 2020;18:571–86.
Google Scholar
Costerton JW, Stewart PS, Greenberg EP. Bacterial biofilms: a common cause of persistent infections. Science. 1999;284:1318–22.
Google Scholar
Drenkard E, Ausubel FM. Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation. Nature. 2002;416:740–3.
Google Scholar
de Carvalho CCCR. Marine biofilms: a successful microbial strategy with economic implications. Front Mar Sci. 2018;5:126.
McDougald D, Rice SA, Barraud N, Steinberg PD, Kjelleberg S. Should we stay or should we go: mechanisms and ecological consequences for biofilm dispersal. Nat Rev Microbiol. 2012;10:39–50.
Google Scholar
Nathan R, Getz WM, Revilla E, Holyoak M, Kadmon R, Saltz D, et al. A movement ecology paradigm for unifying organismal movement research. Proc Natl Acad Sci USA. 2008;105:19052–9.
Google Scholar
Yan J, Monaco H, Xavier JB. The ultimate guide to bacterial swarming: an experimental model to study the evolution of cooperative behavior. Annu Rev Microbiol. 2019;73:293–312.
Google Scholar
Gokhale S, Conwill A, Ranjan T, Gore J. Migration alters oscillatory dynamics and promotes survival in connected bacterial populations. Nat Commun. 2018;9:5273.
Google Scholar
Hallatschek O, Fisher DS. Acceleration of evolutionary spread by long-range dispersal. Proc Natl Acad Sci USA. 2014;111:E4911–9.
Google Scholar
Birzu G, Hallatschek O, Korolev KS. Fluctuations uncover a distinct class of traveling waves. Proc Natl Acad Sci USA. 2018;115:E3645–54.
Google Scholar
Ping D, Wang T, Fraebel DT, Maslov S, Sneppen K, Kuehn S. Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations. ISME J. 2020;14:2007–18.
Google Scholar
Chen L, Noorbakhsh J, Adams RM, Samaniego-Evans J, Agollah G, Nevozhay D, et al. Two-dimensionality of yeast colony expansion accompanied by pattern formation. PLoS Comput Biol. 2014;10:e1003979.
Google Scholar
Patra P, Kissoon K, Cornejo I, Kaplan HB, Igoshin OA. Colony expansion of socially motile Myxococcus xanthus cells is driven by growth, motility, and exopolysaccharide production. PLoS Comput Biol. 2016;12:e1005010.
Google Scholar
Chapman BB, Brönmark C, Nilsson J-Å, Hansson L-A. The ecology and evolution of partial migration. Oikos. 2011;120:1764–75.
Lundberg P. Partial bird migration and evolutionarily stable strategies. J Theor Biol. 1987;125:351–60.
Kokko H. Directions in modelling partial migration: how adaptation can cause a population decline and why the rules of territory acquisition matter. Oikos. 2011;120:1826–37.
Singh NJ, Leonardsson K. Partial migration and transient coexistence of migrants and residents in animal populations. PloS One. 2014;9:e94750.
Google Scholar
Armbruster CE, Mobley HLT. Merging mythology and morphology: the multifaceted lifestyle of Proteus mirabilis. Nat Rev Microbiol. 2012;10:743.
Google Scholar
Schaffer JN, Pearson MM. Proteus mirabilis and urinary tract infections. Microbiol Spectr. 2015;3. https://doi.org/10.1128/microbiolspec.UTI-0017-2013.
Jones BV, Young R, Mahenthiralingam E, Stickler DJ. Ultrastructure of Proteus mirabilis swarmer cell rafts and role of swarming in catheter-associated urinary tract infection. Infect Immun. 2004;72:3941–50.
Google Scholar
Li X, Zhao H, Lockatell CV, Drachenberg CB, Johnson DE, Mobley HL. Visualization of Proteus mirabilis within the matrix of urease-induced bladder stones during experimental urinary tract infection. Infect Immun. 2002;70:389–94.
Google Scholar
Stickler DJ. Bacterial biofilms in patients with indwelling urinary catheters. Nat Clin Pr Urol. 2008;5:598–608.
Google Scholar
Jacobsen SM, Stickler DJ, Mobley HLT, Shirtliff ME. Complicated catheter-associated urinary tract infections due to Escherichia coli and Proteus mirabilis. Clin Microbiol Rev. 2008;21:26–59.
Google Scholar
Harshey RM. Bacterial motility on a surface: many ways to a common goal. Annu Rev Microbiol. 2003;57:249–73.
Google Scholar
Verstraeten N, Braeken K, Debkumari B, Fauvart M, Fransaer J, Vermant J, et al. Living on a surface: swarming and biofilm formation. Trends Microbiol. 2008;16:496–506.
Google Scholar
Kearns DB. A field guide to bacterial swarming motility. Nat Rev Microbiol. 2010;8:634–44.
Google Scholar
Wu Y, Jiang Y, Kaiser AD, Alber M. Self-organization in bacterial swarming: lessons from myxobacteria. Phys Biol. 2011;8:055003.
Google Scholar
Howery KE, Şimşek E, Kim M, Rather PN. Positive autoregulation of the flhDC operon in Proteus mirabilis. Res Microbiol. 2018;169:199–204.
Google Scholar
Little K, Austerman J, Zheng J, Gibbs KA. Cell shape and population migration are distinct steps of Proteus mirabilis swarming that are decoupled on high-percentage agar. J Bacteriol. 2019;201:e00726–18.
Google Scholar
Furness RB, Fraser GM, Hay NA, Hughes C. Negative feedback from a Proteus class II flagellum export defect to the flhDC master operon controlling cell division and flagellum assembly. J Bacteriol. 1997;179:5585–8.
Google Scholar
Claret L, Hughes C. Functions of the subunits in the FlhD(2)C(2) transcriptional master regulator of bacterial flagellum biogenesis and swarming. J Mol Biol. 2000;303:467–78.
Google Scholar
Deegan RD, Bakajin O, Dupont TF, Huber G, Nagel SR, Witten TA. Capillary flow as the cause of ring stains from dried liquid drops. Nature. 1997;389:827–9.
Google Scholar
Andac T, Weigmann P, Velu SKP, Pinçe E, Volpe G, Volpe G, et al. Active matter alters the growth dynamics of coffee rings. Soft Matter. 2019;15:1488–96.
Google Scholar
Nellimoottil TT, Rao PN, Ghosh SS, Chattopadhyay A. Evaporation-induced patterns from droplets containing motile and nonmotile bacteria. Langmuir. 2007;23:8655–8.
Google Scholar
Clemmer KM, Rather PN. Regulation of flhDC expression in Proteus mirabilis. Res Microbiol. 2007;158:295–302.
Google Scholar
Howery KE, Clemmer KM, Rather PN. The Rcs regulon in Proteus mirabilis: implications for motility, biofilm formation, and virulence. Curr Genet. 2016;62:775–89.
Google Scholar
Howery KE, Clemmer KM, Şimşek E, Kim M, Rather PN. Regulation of the min cell division inhibition complex by the Rcs phosphorelay in Proteus mirabilis. J Bacteriol. 2015;197:2499–507.
Google Scholar
Wang Q, Zhao Y, McClelland M, Harshey RM. The RcsCDB signaling system and swarming motility in Salmonella enterica Serovar Typhimurium: dual regulation of flagellar and SPI-2 virulence genes. J Bacteriol. 2007;189:8447–57.
Google Scholar
Samanta P, Clark ER, Knutson K, Horne SM, Prüß BM. OmpR and RcsB abolish temporal and spatial changes in expression of flhD in Escherichia coli biofilm. BMC Microbiol. 2013;13:182.
Google Scholar
Girgis HS, Liu Y, Ryu WS, Tavazoie S. A comprehensive genetic characterization of bacterial motility. PLoS Genet. 2007;3:e154.
Google Scholar
Francez-Charlot A, Laugel B, Van Gemert A, Dubarry N, Wiorowski F, Castanié-Cornet MP, et al. RcsCDB His-Asp phosphorelay system negatively regulates the flhDC operon in Escherichia coli. Mol Microbiol. 2003;49:823–32.
Google Scholar
Rieck VT, Palumbo SA, Witter LD. Glucose availability and the growth rate of colonies of Pseudomonas fluorescens. J Gen Microbiol. 1973;74:1–8.
Google Scholar
Shao X, Mugler A, Kim J, Jeong HJ, Levin BR, Nemenman I. Growth of bacteria in 3-d colonies. PLoS Comput Biol. 2017;13:e1005679.
Google Scholar
Warren MR, Sun H, Yan Y, Cremer J, Li B, Hwa T. Spatiotemporal establishment of dense bacterial colonies growing on hard agar. Elife. 2019;8:e41093.
Google Scholar
Lavrentovich MO, Koschwanez JH, Nelson DR. Nutrient shielding in clusters of cells. Phys Rev E Stat Nonlin Soft Matter Phys. 2013;87:062703. –
Google Scholar
Dal Co A, van Vliet S, Ackermann M. Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations. Philos Trans R Soc Lond B Biol Sci. 2019;374:20190080.
Google Scholar
Huang YH, Ferrières L, Clarke DJ. The role of the Rcs phosphorelay in Enterobacteriaceae. Res Microbiol. 2006;157:206–12.
Google Scholar
Majdalani N, Gottesman S. The Rcs phosphorelay: a complex signal transduction system. Annu Rev Microbiol. 2005;59:379–405.
Google Scholar
Fraebel DT, Mickalide H, Schnitkey D, Merritt J, Kuhlman TE, Kuehn S. Environment determines evolutionary trajectory in a constrained phenotypic space. Elife. 2017;6:e24669.
Google Scholar
Yi X, Dean AM. Phenotypic plasticity as an adaptation to a functional trade-off. Elife. 2016;5:e19307.
Google Scholar
van Ditmarsch D, Boyle KE, Sakhtah H, Oyler JE, Nadell CD, Déziel É, et al. Convergent evolution of hyperswarming leads to impaired biofilm formation in pathogenic bacteria. Cell Rep. 2013;4:697–708.
Google Scholar
Auer GK, Oliver PM, Rajendram M, Lin T-Y, Yao Q, Jensen GJ, et al. Bacterial swarming reduces Proteus mirabilis and Vibrio parahaemolyticus cell stiffness and increases β-Lactam susceptibility. mBio. 2019;10:e00210–19.
Google Scholar
Kaiser D. Bacterial swarming: a re-examination of cell-movement patterns. Curr Biol. 2007;17:R561–R70.
Google Scholar
Inoue T, Shingaki R, Hirose S, Waki K, Mori H, Fukui K. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J Bacteriol. 2007;189:950–7.
Google Scholar
Dong T, Joyce C, Schellhorn H. The role of RpoS in bacterial adaptation. In: El-Sharoud W, editor. Bacterial physiology. Heidelberg: Springer, Berlin; 2008. pp 313-37.
Phaiboun A, Zhang Y, Park B, Kim M. Survival kinetics of starving bacteria is biphasic and density-dependent. PLoS Comput Biol. 2015;11:e1004198.
Google Scholar
Majdalani N, Hernandez D, Gottesman S. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol Microbiol. 2002;46:813–26.
Google Scholar
Peterson CN, Carabetta VJ, Chowdhury T, Silhavy TJ. LrhA regulates rpoS translation in response to the Rcs phosphorelay system in Escherichia coli. J Bacteriol. 2006;188:3175–81.
Google Scholar
Lok T, Overdijk O, Piersma T. The cost of migration: spoonbills suffer higher mortality during trans-Saharan spring migrations only. Biol Lett. 2015;11:20140944.
Google Scholar
Flack A, Fiedler W, Blas J, Pokrovsky I, Kaatz M, Mitropolsky M, et al. Costs of migratory decisions: a comparison across eight white stork populations. Sci Adv. 2016;2:e1500931.
Google Scholar
Rankin MA, Burchsted JCA. The cost of migration in insects. Annu Rev Entomol. 1992;37:533–59.
Ni B, Colin R, Link H, Endres RG, Sourjik V. Growth-rate dependent resource investment in bacterial motile behavior quantitatively follows potential benefit of chemotaxis. Proc Natl Acad Sci USA. 2020;117:595–601.
Google Scholar
Amsler CD, Cho M, Matsumura P. Multiple factors underlying the maximum motility of Escherichia coli as cultures enter post-exponential growth. J Bacteriol. 1993;175:6238–44.
Google Scholar
Yokota T, Gots JS. Requirement of adenosine 3’, 5’-cyclic phosphate for flagella formation in Escherichia coli and Salmonella typhimurium. J Bacteriol. 1970;103:513–6.
Google Scholar
Soutourina O, Kolb A, Krin E, Laurent-Winter C, Rimsky S, Danchin A, et al. Multiple control of flagellum biosynthesis in Escherichia coli: role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon. J Bacteriol. 1999;181:7500–8.
Google Scholar
Silverman M, Simon M. Characterization of Escherichia coli flagellar mutants that are insensitive to catabolite repression. J Bacteriol. 1974;120:1196–203.
Google Scholar
Mitrophanov AY, Groisman EA. Positive feedback in cellular control systems. Bioessays. 2008;30:542–55.
Google Scholar
Raj A, van Oudenaarden A. Nature, nurture, or chance: stochastic gene expression and its consequences. Cell. 2008;135:216–26.
Ferrières L, Clarke DJ. The RcsC sensor kinase is required for normal biofilm formation in Escherichia coli K-12 and controls the expression of a regulon in response to growth on a solid surface. Mol Microbiol. 2003;50:1665–82.
Google Scholar
Guttenplan SB, Kearns DB. Regulation of flagellar motility during biofilm formation. FEMS Microbiol Rev. 2013;37:849–71.
Google Scholar
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