Sicard, A., Michalakis, Y., Gutiérrez, S. & Blanc, S. The strange lifestyle of multipartite viruses. PLoS Pathog. 12, 1–19 (2016).
Lucía-sanz, A. & Manrubia, S. Multipartite viruses: Adaptive trick or evolutionary treat ?. NPJ Syst. Biol. Appl. 34, 1–11 (2017).
Rojas, M. R., Hagen, C., Lucas, W. J. & Gilbertson, R. L. Exploiting chinks in the plant’s armor: Evolution and emergence of geminiviruses. Annu. Rev. Phytopathol. 43, 361–394 (2005).
Google Scholar
Zerbini, F. M. et al. ICTV virus taxonomy profile: Geminiviridae. J. Gen. Virol. 98, 131–133 (2017).
Google Scholar
Varsani, A. et al. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus. Arch. Virol. 159, 1873–1882 (2014).
Google Scholar
Zhou, X. Advances in understanding begomovirus satellites. Annu. Rev. Phytopathol. 51, 357–381 (2013).
Google Scholar
Lozano, G. et al. Characterization of non-coding DNA satellites associated with sweepoviruses (Genus Begomovirus, Geminiviridae)—Definition of a distinct class of Begomovirus-associated satellites. Front. Microbiol. 7, 1–13 (2016).
Fondong, V. N. Geminivirus protein structure and function. Mol. Plant Pathol. 14, 635–649 (2013).
Google Scholar
Shafiq, M., Asad, S., Zafar, Y., Briddon, R. W. & Mansoor, S. Pepper leaf curl Lahore virus requires the DNA B component of tomato leaf curl New Delhi virus to cause leaf curl symptoms. Virol. J. 7, 367 (2010).
Google Scholar
Hanley-Bowdoin, L. et al. Geminiviruses : models for plant DNA replication, transcription and cell cycle regulation. Crit. Rev. Plant Sci. 18, 71–106 (1999).
Google Scholar
De Bruyn, A. et al. East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus. BMC Evol. Biol. 12, 1–18 (2012).
Navas-Castillo, J., Fiallo-Olivé, E. & Sanchez-Campos, S. Emerging virus diseases transmitted by whiteflies. Annu. Rev. Phytopathol. 49, 219–248 (2011).
Google Scholar
Rey, M. E. C. et al. Diversity of dicotyledenous-infecting geminiviruses and their associated DNA molecules in southern Africa, including the South-west Indian ocean islands. Viruses 4, 1753–1791 (2012).
Google Scholar
Brown, J. K. et al. Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch. Virol. 160, 1593–1619 (2015).
Google Scholar
Ouattara, A. et al. Diversity, distribution and prevalence of vegetable-infecting geminiviruses in Burkina Faso. Plant Pathol. 69, 379–392 (2019).
Tiendrébéogo, F. et al. Characterization of pepper yellow vein Mali virus in Capsicum sp. Burkina Faso. Plant Pathol. J. 7, 155–161 (2008).
Zhou, Y. C. et al. Evidence of local evolution of tomato-infecting begomovirus species in West Africa: Characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali. Arch. Virol. 153, 693–706 (2008).
Google Scholar
Hamilton, W. D. O., Bisaro, D. M., Coutts, R. H. A. & Buck, K. W. Demonstration of the bipartite nature of the genome of a single-stranded DNA plant virus by infection with the doned DNA component. Nucleic Acids Res. 11, 7387–7396 (1983).
Google Scholar
Padidam, R., Beachy, R. N. & Fauquet, C. M. Tomato leaf curl geminivirus from India has a bipartite genome and coat protein is not essential for infectivity. J. Gen. Virol. 76, 25–35 (1995).
Google Scholar
Rochester, D. E., DePaulo, J. J., Fauquet, C. M. & Beachy, R. N. Complete nucleotide sequence of the geminivirus tomato yellow leaf curl virus Thailand isolate. J. Gen. Virol. 75, 477–485 (1994).
Google Scholar
Chakraborty, S., Pandey, P. K., Banerjee, M. K., Kalloo, G. & Fauquet, C. M. Tomato leaf curl Gujarat virus a new begomovirus species causing a severe leaf curl disease of tomato in Varanasi India. Phytopathology 93, 1485–1495 (2003).
Google Scholar
Sattar, M. N. et al. First identification of begomoviruses infecting tomato with leaf curl disease in Burkina Faso. Plant Dis. 99, 732–732 (2015).
Ouattara, A. et al. Tomato leaf curl Burkina Faso virus: a novel tomato-infecting monopartite begomovirus from Burkina Faso. Arch. Virol. 162, 1427–1429 (2017).
Google Scholar
Tiendrébéogo, F. et al. Molecular and biological characterization of pepper yellow vein Mali virus (PepYVMV) isolates associated with pepper yellow vein disease in Burkina Faso. Arch. Virol. 156, 483–487 (2011).
Google Scholar
Chen, L.-F. et al. A severe symptom phenotype in tomato in Mali is caused by a reassortant between a novel recombinant begomovirus (Tomato yellow leaf curl Mali virus ) and a betasatellite. Mol. Plant Pathol. 10, 415–430 (2009).
Google Scholar
Rojas, M. R. et al. Functional analysis of proteins involved in movement of the monopartite begomovirus, tomato yellow leaf curl virus. Virology 291, 110–125 (2001).
Google Scholar
Ranjan, P., Kumar, R. V. & Chakraborty, S. Differential pathogenicity among tomato leaf curl Gujarat virus isolates from India. Virus Genes 47, 524–531 (2013).
Google Scholar
Jyothsna, P. et al. Infection of tomato leaf curl New Delhi virus (ToLCNDV), a bipartite begomovirus with betasatellites, results in enhanced level of helper virus components and antagonistic interaction between DNA B and betasatellites. Appl. Microbiol. Biotechnol. 97, 5457–5471 (2013).
Google Scholar
Duan, Y. P., Powell, C. A., Purcifull, D. E., Broglio, P. & Hiebert, E. Phenotypic variation in transgenic tobacco expressing mutated geminivirus movement/pathogenicity (BC1) proteins. Mol. Plant- Microbe Interact. 10, 1065–1074 (1997).
Google Scholar
Hussain, M., Mansoor, S., Iram, S., Fatima, A. N. & Zafar, Y. The nuclear shuttle protein of tomato leaf curl New Delhi virus is a pathogenicity determinant. J. Virol. 79, 4434–4439 (2005).
Google Scholar
Geoghegan, J. L. & Holmes, E. C. The phylogenomics of evolving virus virulence. Nat. Rev. Genet. 19, 756–769 (2018).
Google Scholar
Péréfarres, F. et al. Frequency-dependent assistance as a way out of competitive exclusion between two strains of an emerging virus. Proc. R. Soc. B Biol. Sci. 281, 1–9 (2014).
Wang, H. L., Gilbertson, R. L. & Lucas, W. J. Spatial and temporal distribution of bean dwarf mosaic geminivirus in Phaseolus vulgaris and Nicotiana benthamiana. Phytopathology 86, 1204–1214 (1996).
Hanley-Bowdoin, L., Bejarano, E. R., Robertson, D. & Mansoor, S. Geminiviruses: Masters at redirecting and reprogramming plant processes. Nat. Rev. Microbiol. 11, 777–788 (2013).
Google Scholar
Londono, A., Riego-Ruiz, L. & Arguello-Astorga, G. R. DNA-binding specificity determinants of replication proteins encoded by eukaryotic ssDNA viruses are adjacent to widely separated RCR conserved motifs. Arch. Virol. 155, 1033–1046 (2010).
Google Scholar
Gutiérrez, S., Michalakis, Y., Van Munster, M. & Blanc, S. Plant feeding by insect vectors can affect life cycle, population genetics and evolution of plant viruses. Funct. Ecol. 27, 610–622 (2013).
Lee, C. H. et al. A single amino acid substitution in the movement protein enables the mechanical transmission of a geminivirus. Mol. Plant Pathol. 00, 1–18 (2020).
Froissart, R., Doumayrou, J., Vuillaume, F., Alizon, S. & Michalakis, Y. The virulence-transmission trade-off in vector-borne plant viruses: A review of (non-)existing studies. Philos. Trans. R. Soc. B 365, 1907–1918 (2010).
Google Scholar
Ditta, G., Stanfield, S. & Corbin, D. Broad host range DNA cloning system for Gram-negative bacteria: Construction of a gene bank of Rhizobium meliloti. Proc. Natl. Acad. Sci. 77, 7347–7351 (1980).
Google Scholar
Lapidot, M., Cohen, L., Machbash, Z. & Levy, D. Development of a scale for evaluation of tomato yellow leaf curl virus resistance level in tomato plants. Phytopathology 96, 1404–1408 (2006).
Google Scholar
Vernerey, M. S., Pirolles, E., Blanc, S. & Sicard, A. Localizing genome segments and protein products of a multipartite virus in host plant cells. Bio-Protoc. 9, 1–14 (2019).
Lefeuvre, P., Hoareau, M., Delatte, H., Reynaud, B. & Lett, J. M. A multiplex PCR method discriminating between the TYLCV and TYLCV-Mld clades of tomato yellow leaf curl virus. J. Virol. Methods 144, 165–168 (2007).
Google Scholar
Urbino, C. et al. Within-host dynamics of the emergence of tomato yellow leaf curl virus recombinants. PLoS ONE 8, 1–14 (2013).
Conflon, D. et al. Accumulation and transmission of alphasatellite, betasatellite and tomato yellow leaf curl virus in susceptible and Ty-1 resistant tomato plants. Virus Res. 253, 124–134 (2018).
Google Scholar
R Development Core Team. R: A language and environment for statistical computing. (2017).
Pinheiro, J. C., Bates, D. M., DebRoy, S., Sarkar, D. & Team, R. C. nlme: Linear and nonlinear mixed effects models. (2016).
Hothorn, T., Bretz, F. & Westfall, P. Simultaneous inference in general parametric models. Biometrical J. 50, 346–363 (2008).
Google Scholar
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