Wakil SJ, Titchener EB, Gibson DM. Evidence for the participation of biotin in the enzymic synthesis of fatty acids. Biochim Biophys Acta. 1958;29:225–6.
Google Scholar
Lardy HA, Peanasky R. Metabolic functions of biotin. Physiol Rev. 1953;33:560–5.
Google Scholar
Zeczycki TN, Menefee AL, Adina-Zada A, Jitrapakdee S, Surinya KH, Wallace JC, et al. Novel Insights into the biotin carboxylase domain reactions of pyruvate carboxylase from Rhizobium etli. Biochemistry. 2011;50:9724–37.
Google Scholar
Waldrop GL, Holden HM, Maurice MS. The enzymes of biotin dependent CO2 metabolism: What structures reveal about their reaction mechanisms. Protein Sci Publ Protein Soc. 2012;21:1597–619.
Google Scholar
Entcheva P, Phillips DA, Streit WR. Functional analysis of Sinorhizobium meliloti genes involved in biotin synthesis and transport. Appl Environ Microbiol. 2002;68:2843–8.
Google Scholar
E. Webb M, Marquet A, R. Mendel R, Rébeillé F, G. Smith A. Elucidating biosynthetic pathways for vitamins and cofactors. Nat Prod Rep. 2007;24:988–1008.
Google Scholar
Streit WR, Entcheva P. Biotin in microbes, the genes involved in its biosynthesis, its biochemical role and perspectives for biotechnological production. Appl Microbiol Biotechnol. 2003;61:21–31.
Google Scholar
Tang YZ, Koch F, Gobler CJ. Most harmful algal bloom species are vitamin B1 and B12 auxotrophs. Proc Natl Acad Sci. 2010;107:20756–61.
Google Scholar
Croft MT, Warren MJ, Smith AG. Algae need their vitamins. Eukaryot Cell. 2006;5: 1175–83.
Google Scholar
Sañudo-Wilhelmy SA, Gómez-Consarnau L, Suffridge C, Webb EA. The role of B vitamins in marine biogeochemistry. Annu Rev Mar Sci. 2014;6:339–67.
Google Scholar
Rodionov DA, Arzamasov AA, Khoroshkin MS, Iablokov SN, Leyn SA, Peterson SN, et al. Micronutrient requirements and sharing capabilities of the human gut microbiome. Front Microbiol. 2019;10:1316.
Google Scholar
Croft MT, Lawrence AD, Raux-Deery E, Warren MJ, Smith AG. Algae acquire vitamin B12 through a symbiotic relationship with bacteria. Nature. 2005;438:90–3.
Google Scholar
Carini P, Campbell EO, Morré J, Sañudo-Wilhelmy SA, Cameron Thrash J, Bennett SE, et al. Discovery of a SAR11 growth requirement for thiamin’s pyrimidine precursor and its distribution in the Sargasso Sea. ISME J. 2014;8:1727–38.
Google Scholar
Paerl RW, Sundh J, Tan D, Svenningsen SL, Hylander S, Pinhassi J, et al. Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability. Proc Natl Acad Sci USA. 2018;115:E10447–56.
Google Scholar
Helliwell KE, Lawrence AD, Holzer A, Kudahl UJ, Sasso S, Kräutler B, et al. Cyanobacteria and eukaryotic algae use different chemical variants of vitamin B12. Curr Biol. 2016;26:999–1008.
Google Scholar
Heal KR, Carlson LT, Devol AH, Armbrust EV, Moffett JW, Stahl DA, et al. Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry. Rapid Commun Mass Spectrom RCM. 2014;28:2398–404.
Google Scholar
Wienhausen G, Dlugosch L, Jarling R, Wilkes H, Giebel H-A, Simon M. Availability of vitamin B12 and its lower ligand intermediate α-ribazole impact prokaryotic and protist communities in oceanic systems. ISME J. 2022;16:2002–14.
Google Scholar
Cooper MB, Kazamia E, Helliwell KE, Kudahl UJ, Sayer A, Wheeler GL, et al. Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae. ISME J. 2019;13:334–45.
Google Scholar
Cruz-López R, Maske H, Yarimizu K, Holland NA. The B-Vitamin mutualism between the Dinoflagellate Lingulodinium polyedrum and the bacterium Dinoroseobacter shibae. Front Mar Sci. 2018;5:274.
Google Scholar
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, et al. Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia. Sci Rep. 2021;11:1726.
Google Scholar
Burkholder PR, Lewis S. Some patterns of B vitamin requirements among neritic marine bacteria. Can J Microbiol. 1968;14:537–43.
Google Scholar
Leonian LH, Lilly VG. Conversion of desthiobiotin into biotin or biotinlike substances by some microorganisms. J Bacteriol. 1945;3:291–7.
Google Scholar
Lilly VG, Leonian LH. The anti-biotin effect of desthiobiotin. Science. 1944;99:205–6.
Google Scholar
Dittmer K, Melville DB, du Vigneaud V. The possible synthesis of biotin from desthiobiotin by yeast and the anti-biotin effect of desthiobiotin for L. casei. Science. 1944;99:203–5.
Google Scholar
Prakash O, Eisenberg MA. Active transport of biotin in Escherichia coli K-12. J Bacteriol. 1974;120:785–91.
Google Scholar
Longnecker K, Sievert SM, Sylva SP, Seewald JS, Kujawinski EB. Dissolved organic carbon compounds in deep-sea hydrothermal vent fluids from the East Pacific Rise at 9°50′N. Org Geochem. 2018;125:41–49.
Google Scholar
Johnson WM, Soule MCK, Longnecker K, Bhatia MP, Hallam SJ, Lomas MW, et al. Insights into the controls on metabolite distributions along a latitudinal transect of the western Atlantic Ocean. 2021. bioRxiv. 2021.03.09.434501; https://doi.org/10.1101/2021.03.09.434501.
Suffridge CP, Gómez‐Consarnau L, Monteverde DR, Cutter L, Arístegui J, Alvarez‐Salgado XA, et al. B vitamins and their congeners as potential drivers of microbial community composition in an oligotrophic marine ecosystem. J Geophys Res Biogeosciences. 2018;123:2890–907.
Google Scholar
Suffridge C, Cutter L, Sañudo-Wilhelmy SA. A new analytical method for direct measurement of particulate and dissolved B-vitamins and their congeners in seawater. Front Mar Sci. 2017;4:2296.
Google Scholar
Natarajan KV. Distribution of thiamine, biotin, and niacin in the sea. Appl Microbiol. 1968;16:366–9.
Google Scholar
Ohwada K. Bioassay of biotin and its distribution in the sea. Mar Biol. 1972;14:10–17.
Google Scholar
Luo H, Moran MA. Evolutionary ecology of the marine roseobacter clade. Microbiol Mol Biol Rev. 2014;78:573–87.
Google Scholar
Guillard RRL, Ryther JH. Studies of marine planktonic diatoms: i. Cyclotella nana hustedt, and Detonula confervacea (cleve) gran. Can J Microbiol. 1962;8:229–39.
Google Scholar
Lunau M, Lemke A, Walther K, Martens-Habbena W, Simon M. An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ Microbiol. 2005;7:961–8.
Google Scholar
Osterholz H, Niggemann J, Giebel H-A, Simon M, Dittmar T. Inefficient microbial production of refractory dissolved organic matter in the ocean. Nat Commun. 2015;6:7422.
Google Scholar
Taga ME, Xavier KB. Methods for analysis of bacterial autoinducer-2 production. Curr Protoc Microbiol. 2011;Chapter 1:Unit1C.1.
Google Scholar
Cakić N, Kopke B, Rabus R, Wilkes H. Suspect screening and targeted analysis of acyl coenzyme A thioesters in bacterial cultures using a high-resolution tribrid mass spectrometer. Anal Bioanal Chem. 2021;413:3599–610.
Google Scholar
Shelton AN, Seth EC, Mok KC, Han AW, Jackson SN, Haft DR, et al. Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics. ISME J. 2019;13:789–804.
Google Scholar
Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P. Prediction of effective genome size in metagenomic samples. Genome Biol. 2007;8:R10.
Google Scholar
Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, et al. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature. 2015;523:208–11.
Google Scholar
Dlugosch L, Poehlein A, Wemheuer B, Pfeiffer B, Badewien TH, Daniel R, et al. Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome. Nat Commun. 2022;13:456.
Google Scholar
Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. metaSPAdes: a new versatile metagenomic assembler. Genome Res. 2017;27:824–34.
Google Scholar
Hyatt D, Chen G-L, LoCascio PF, Land ML, Larimer FW, Hauser LJ. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinforma. 2010;11:119.
Google Scholar
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460–1.
Google Scholar
Menzel P, Ng KL, Krogh A. Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nat Commun. 2016;7:11257.
Google Scholar
Mende DR, Letunic I, Huerta-Cepas J, Li SS, Forslund K, Sunagawa S, et al. proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. Nucleic Acids Res. 2017;45:D529–D534.
Google Scholar
Wildiers E. Nouvelle substance indispensable au developpement de la levure. La Cellule. 1901;18:311–33.
du Vigneaud V, Hofmann K, Melville DB, Rachele JR. The preparation of free crystaline biotin. J Biol Chem. 1941;140:763–6.
Google Scholar
Firestone BY, Koser SA. Growth promoting effect of some biotin analogues for Candida albicans. J Bacteriol. 1960;79:674–6.
Google Scholar
Gómez-Consarnau L, Sachdeva R, Gifford SM, Cutter LS, Fuhrman JA, Sañudo-Wilhelmy SA, et al. Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community. Environ Microbiol. 2018;20:2809–23.
Google Scholar
Carini PJ. Genome-enabled investigation of the minimal growth requirements andphosphate metabolism for Pelagibacter marine bacteria. Oregon State University 2014; dissertation: 9593v081h
Bertrand EM, Saito MA, Rose JM, Riesselman CR, Lohan MC, Noble AE, et al. Vitamin B12 and iron colimitation of phytoplankton growth in the Ross Sea. Limnol Oceanogr. 2007;52:1079–93.
Google Scholar
Azhar A, Booker G, Polyak S. Mechanisms of biotin transport. Biochem Anal Biochem. 2015,4:210.
Agarwal S, Dey S, Ghosh B, Biswas M, Dasgupta J. Mechanistic basis of vitamin B12 and cobinamide salvaging by the Vibrio species. Biochim Biophys Acta BBA—Proteins Proteom. 2019;1867:140–51.
Google Scholar
Giovannoni SJ, Cameron Thrash J, Temperton B. Implications of streamlining theory for microbial ecology. ISME J. 2014;8:1553–65.
Google Scholar
Morris JJ, Lenski RE, Zinser ER. The black queen hypothesis: evolution of dependencies through adaptive gene loss. mBio. 2012;3:e00036–12.
Google Scholar
Morris JJ. Black queen evolution: the role of leakiness in structuring microbial communities. Trends Genet. 2015;31:475–82.
Google Scholar
Wienhausen G, Noriega-Ortega BE, Niggemann J, Dittmar T, Simon M. The exometabolome of two model strains of the roseobacter group: a marketplace of microbial metabolites. Front Microbiol. 2017;8:1985.
Google Scholar
Wienhausen G, Paerl RW, Bittner M. Key knowledge gaps to fill at the cell-to-ecosystem level in marine B-vitamin cycling. Front Perspect. 2022;9:835.
Cohen NR A, Ellis K, Burns WG, Lampe RH, Schuback N, Johnson Z, et al. Iron and vitamin interactions in marine diatom isolates and natural assemblages of the Northeast Pacific Ocean. Limnol Oceanogr. 2017;62:2076–96.
Google Scholar
Marinov I, Doney SC, Lima ID. Response of ocean phytoplankton community structure to climate change over the 21st century: partitioning the effects of nutrients, temperature and light. Biogeosciences. 2010;7:3941–59.
Google Scholar
Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, et al. Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life. ISME J. 2012;6:2229–44.
Google Scholar
Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, et al. The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker’s guide to life in the sea. ISME J. 2010;4:61–77.
Google Scholar
Source: Ecology - nature.com
