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Synnovation and confluence explain disparities in species richness across the Andes and Hengduan-Himalaya Mountains


Abstract

Mountain regions harbor extraordinary biodiversity, yet the mechanisms underlying this pattern remain unclear. Here we use the phylogenetically and geographically replicated radiations of Berberis (barberries) in the Andes and Hengduan–Himalaya Mountains (HHM) to test how functional trait innovations, orogeny, and climate change influenced the buildup of species richness in each region. In barberries (Berberis), the successive evolution of deciduousness and small, densely-veined leaves enabled the lineage to take advantage of expanding alpine and subalpine habitats in the HHM during the Miocene. The resulting pulse in the origin of new species contrasts with the more modest rate of species accumulation in the Andes, where barberry species remained evergreen and the availability of high-elevation habitats was more limited. In this study, the phylogeny of barberries exemplifies context-dependent macroevolutionary dynamics, in which intrinsic innovations and extrinsic ecological opportunities interacted to generate exceptional plant diversity in a mountain hotspot.

Acknowledgements

We are grateful to Mr. Julian Harber (UK) for his continued guidance and support of our studies on Berberis. We thank the curators and staff of the Field Museum of Natural History (USA), Missouri Botanical Garden (USA), Royal Botanic Garden Edinburgh (UK), Royal Botanic Gardens, Kew (UK), California Botanic Garden (USA), the Herbarium of the Kunming Institute of Botany (KIB, China), and the Herbarium of the Institute of Botany, Chinese Academy of Sciences (PE, China) for their assistance with specimen examination, taxonomic verification, and tissue sampling. We thank the Germplasm Bank of Wild Species at the Kunming Institute of Botany (China) for facilitating DNA extraction and sequencing from herbarium and historic collections. We thank Mr. Hongxi Zhang for assistance with field sampling and Mr. Ke (Jungle) Liang for assistance with leaf trait measurements. We thank Drs. Kuo-Fang Chung, Kyle Tomlinson, and Sheng-Feng Shen for their long-term support and encouragement throughout this project, and Drs. Qiuyue Zhang, Linbo Jia, Jian Huang, and Wenna Ding for their constructive comments on earlier versions of the manuscript. Computational analyses were supported by the Grainger Bioinformatics Center at the Field Museum of Natural History through the provision of bioinformatic infrastructure and computing resources.

Funding

This work is supported by National Natural Science Foundation of China (National Science Foundation of China to Y.-W. Xing)–32225005; The 14th Five-Year Plan of the Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences (XTBG-1450101 and XTBG-1450102 to Y.-W. Xing), Yunnan Revitalization Talent Support Program-Yunling Scholar Project (XDYC-YLXZ-2023-0029 to Y.-W. Xing), the Young and Middle-aged Academic and Technical Leaders of Yunnan (No. 202305AC160051 to S.-F. Li) and the Yunnan Fundamental Research Projects (202501BC070013 to Y.-W. Xing).

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Richard H. Ree or Yao-Wu Xing.

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Yu, CC., Du, ZQ., Onstein, R.E. et al. Synnovation and confluence explain disparities in species richness across the Andes and Hengduan-Himalaya Mountains.
Nat Commun (2026). https://doi.org/10.1038/s41467-026-75790-3

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