Abstract
Climate extremes and declining water availability in the U.S. High Plains threaten the long-term sustainability of alfalfa production. This study presents a machine learning (ML) based modeling framework to identify and evaluate key agro-climatic predictors of alfalfa (Medicago sativa L.) yield across nine agricultural districts in Kansas from 1981 to 2018. A novel contribution of this study is the integration of a high-dimensional climate predictor space, long-term historical records, and district-level stratification of irrigated and rainfed systems to systematically assess spatially varying climate-yield relationships. Using a high-dimensional feature space of 117 climate-derived variables from PRISM and yield data from USDA-NASS, a Minimum Redundancy Maximum Relevance (mRMR) algorithm was applied to rank predictors, followed by forward feature selection with three non-parametric regression models. Four spatial configurations were evaluated—statewide, district-specific, irrigated, and rainfed datasets. The Kansas High Plains region, with its strong west-to-east precipitation gradient, groundwater-dependent irrigation systems, and recurrent drought exposure, offers a globally relevant testbed for understanding crop-climate interactions in semi-arid environments. Model evaluation RMSE during feature selection ranged from 0.52 to 1.14 tons/acre. Dew point temperature in August and seasonal VPD metrics emerged as dominant predictors, indicating these variables are strongly associated with late-summer yield variability. Rainfed districts prioritized drought indicators (e.g., no precipitation days, VPD), while irrigated districts showed stronger associations with thermal and humidity metrics. By explicitly accounting for climate sensitivities across management regimes and spatial scales, this framework provides a transferable approach for identifying robust, region-specific climate drivers in high-dimensional agricultural datasets.
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Abbreviations
- USDA-NASS:
USDA National Agricultural Statistics Service
- PRISM:
Parameter elevation Regression on Independent Slopes Model
- RH:
Relative humidity
- VPD:
Vapor pressure deficit
- GDD:
Growing degree days
- ML:
Machine learning
- mRMR:
Minimum redundancy maximum relevance
- MI:
Mutual information
- SVM:
Support vector machines
- KNN:
K-nearest neighbors
- RF:
Random forest
- CV:
Cross validation
- RMSE:
Root mean squared error
Acknowledgements
This research was supported by Kansas State University Research and Extension through access to data infrastructure and collaborative resources. Additional support was provided by start-up funding from the College of Agriculture and Life Sciences at North Carolina State University. The authors also acknowledge Montana State University for its contributions towards this work, particularly in developing methodological frameworks and research training.
Funding
This study was partially supported by the National Institute of Food and Agriculture, U.S. Department of Agriculture, under the Alfalfa and Forage Research Program (Grant No. 2023-70005-41080; Accession No. 1031454), as part of the project titled Drought Resilient Alfalfa Production (D-RAP) Using Digital Agriculture and Machine Learning Techniques and Research Capacity Fund (HATCH, HATCH MULTISTATE NC1210), Award No.: 7009808, 7010251.
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Nazrul, F., Kim, J., Dey, S. et al. Data-driven and machine learning framework for Alfalfa yield response to long-term climate variability in the Kansas High Plains (USA).
Sci Rep (2026). https://doi.org/10.1038/s41598-026-55545-2
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DOI: https://doi.org/10.1038/s41598-026-55545-2
Keywords
- Alfalfa
- Climate variables
- Feature selection
- Minimum Redundancy Maximum Relevance (mRMR) algorithm
- Machine learning framework
- Kansas high plains
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