Voegele, J. Fish to 2030. Prospects for fisheries and aquaculture. World Bank Report 83177–GLB (2013).
Blaylock, R. & Bullard, S. Counter-insurgents of the blue revolution? Parasites and diseases affecting aquaculture and science. Journal of Parasitology 100, 743–755 (2014).
Lafferty, K. et al. Infectious diseases affect marine fisheries and aquaculture economics. Annual Review of Marine Science 7, 471–496 (2015).
Murray, A. & Peeler, E. A framework for understanding the potential for emerging diseases in aquaculture. Preventive Veterinary Medicine 67, 223–235 (2005).
Naylor, R. et al. Effect of aquaculture on world fish supplies. Nature 405, 1017–1024 (2000).
Krkošek, M. Sea lice and salmon in Pacific Canada: ecology and policy. Frontiers in Ecology and the Environment 8, 201–209 (2010).
Jones, S. Controlling salmon lice on farmed salmon and implications for wild salmon. Frontiers in Ecology and the Environment 4, 1–13 (2009).
Marty, G. D., Saksida, S. M. & Quinn, T. J. Relationship of farm salmon, sea lice, and wild salmon populations. Proceedings of the National Academy of Sciences 201009573 (2010).
Baumgartner, W., Hawke, J., Bowles, K., Varner, P. & Hasson, K. Primary diagnosis and surveillance of white spot syndrome virus in wild and farmed crawfish (Procambarus clarkii, P. zonangulus) in Louisiana, USA. Diseases of Aquatic Organisms 85, 15–22 (2009).
Escobedo-Bonilla, C. et al. A review on the morphology, molecular characterization, morphogenesis and pathogenesis of white spot syndrome virus. Journal of Fish Diseases 31, 1–18 (2008).
Wang, Y., Lo, C., Chang, P. & Kou, G. H. Experimental infection of white spot baculovirus in some cultured and wild decapods in Taiwan. Aquaculture 164, 221–231 (1998).
Peeler, E. J., Oidtmann, B., Midtlyng, P., Miossec, L. & Gozlan, R. Non-native aquatic animals introductions have driven disease emergence in Europe. Biological Invasions 13, 1291–1303 (2011).
Barrett, L. T., Swearer, S. E. & Dempster, T. Impacts of marine and freshwater aquaculture on wildlife: a global meta-analysis. Reviews in Aquaculture https://doi.org/10.1111/raq.12277 (2018).
Bergh, O. The dual myths of the healthy wild fish and the unhealthy farmed fish. Disease of Aquatic Organisms 75, 159–164 (2007).
Krkošek, M. Population biology of infectious diseases shared by wild and farmed fish. Canadian Journal of Fisheries and Aquatic Sciences 74, 620–628 (2017).
Peeler, E. J. & Murray, A. G. Disease interaction between farmed and wild fish populations. Journal of Fish Biology 65, 321–322 (2004).
Krkošek, M. et al. Declining wild salmon populations in relation to parasites from farm salmon. Science 318, 1772–1775 (2007).
Fernandez-Jover, D., Faliex, E., Sanchez-Jerez, P., Sasal, P. & Bayle-Sempere, J. Coastal fish farming does not affect the total parasite communities of wild fish in SW Mediterranean. Aquaculture 300, 10–16 (2010).
Johansen, L. et al. Disease interaction and pathogens exchange between wild and farmed fish populations with special reference to Norway. Aquaculture 315, 167–186 (2011).
McVicar, A. Disease and parasite implications of the coexistence of wild and cultured Atlantic salmon populations. ICES Journal of Marine Science 54, 1093–1103 (1997).
Daszak, P., Cunningham, A. & Hyatt, A. Emerging infectious diseases of wildlife – threats to biodiversity and human health. Science 287, 443–449 (2000).
Kurath, G. & Winton, J. Complex dynamics at the interface between wild and domestic viruses of finfish. Current Opinion in Virology 1, 73–80 (2011).
Saksida, S. M., Gardner, I. & Kent, M. L. Transmission of infectious agents between wild and farmed fish. Diseases and Disorders of Finfish in Cage Culture 313 (2014).
McCallum, H. I. Infection dynamics of Ichthyophthirius multifiliis. Parasitology 85, 475–488 (1982).
Matthews, R. Ichthyophthirius multifiliis Fouquet and ichthyophthiriosis in freshwater teleosts. Advances in Parasitology 59, 159–241 (2005).
Shinn, A., Picon-Camacho, S., Bawden, R. & Taylor, N. G. H. Mechanical control of Ichthyophthirius multifiliis Fouquet, 1876 (Ciliophora) in a rainbow trout hatchery. Aquacultural Engineering 41, 152–157 (2009).
Buchmann, K. Immune response to Ichthyophthirius multifiliis and role of IgT. Parasite immunology e12675 (2019).
Wang, Q., Yu, Y., Zhang, X. & Xu, Z. Immune responses of fish to Ichthyophthirius multifiliis (Ich): A model for understanding immunity against protozoan parasites. Developmental & Comparative Immunology (2019).
Dickerson, H. & Clark, T. Ichthyophthirius multifiliis: a model of cutaneous infection and immunity in fishes. Immunological Reviews 166, 377–384 (1998).
Krkošek, M. Host density thresholds and disease control for fisheries and aquaculture. Aquaculture Environment Interactions 1, 21–32 (2010).
Murray, A. Using simple models to review the application and implications of different approaches used to simulate transmission of pathogens among aquatic animals. Preventive Veterinary Medicine 88, 167–177 (2009).
Krkošek, M., Bateman, A., Proboszcz, S. & Orr, C. Dynamics of outbreak and control of salmon lice on two salmon farms in the Broughton Archipelago, British Columbia. Aquaculture Environment Interactions 1, 137–146 (2010).
Krkošek, M., Lewis, M. & Volpe, J. Transmission dynamics of parasitic sea lice from farm to wild salmon. Proceedings of the Royal Society 272, 689–696 (2005).
Krkošek, M., Lewis, M., Morton, A., Frazer, L. & Volpe, J. Epizootics of wild fish induced by farm fish. Proceedings of the National Academy of Sciences 103, 15506–15510 (2006).
Amundrud, T. & Murray, A. Modelling sea lice dispersion under varying environmental forcing in a Scottish sea loch. Journal of Fish Diseases 32, 27–44 (2009).
Salama, N., Murray, A. & Rabe, B. Modelling dispersal of salmon lice in a large fjordic system: Loch Linnhe, Scotland. MODSIM2011 19th International Congress on Modelling and Simulation 12–16 (2011).
McCallum, H. I. & Anderson, R. Systematic temporal changes in host susceptibility to infection: demographic mechanisms. Parasitology 89, 195–208 (1984).
McCallum, H. I. Population effects of parasite survival of host death: experimental studies of the interaction of Ichthyophthirius multifiliis and its fish host. Parasitology 90, 529–547 (1985).
McCallum, H. I. Acquired resistance of black mollies Poecilia latipinna to infection by Ichthyophthirius multifiliis. Parasitology 93, 251–261 (1986).
May, R. & Anderson, R. Population biology of infectious diseases: Part II. Nature 280, 455–461 (1979).
Ellis, T. et al. The relationships between stocking density and welfare in farmed rainbow trout. Journal of Fish Biology 61, 493–531 (2002).
Anderson, D. P. Environmental factors in fish health: immunological aspects. The fish immune system: organism, pathogen, and environment 289–310 (1996).
Bowden, T. J., Thompson, K. D., Morgan, A. L., Gratacap, R. M. & Nikoskelainen, S. Seasonal variation and the immune response: a fish perspective. Fish & Shellfish Immunology 22, 695–706 (2007).
Bowden, T. J. Modulation of the immune system of fish by their environment. Fish & Shellfish Immunology 25, 373–383 (2008).
Köllner, B., Wasserrab, B., Kotterba, G. & Fischer, U. Evaluation of immune functions of rainbow trout (Oncorhynchus mykiss)—how can environmental influences be detected? Toxicology Letters 131, 83–95 (2002).
Price, D. J. & Clayton, G. M. Genotype–environment interactions in the susceptibility of the common carp, Cyprinus carpio, to Ichthyophthirius multifiliis infections. Aquaculture 173, 149–160 (1999).
Dickerson, H. Ichthyophthirius multifiliis and Cryptocaryon irritans (Phylum Ciliophora). Fish Diseases and Disorders 1, 116–153 (2006).
Aubin, J., Papatryphon, E., Van der Werf, H. & Chatzifotis, S. Assessment of the environmental impact of carnivorous finfish production systems using life cycle assessment. Journal of Cleaner Production 17, 354–361 (2009).
d’Orbcastel, E. R. et al. Comparison of two methods for evaluating waste of a flow through trout farm. Aquaculture 274, 72–79 (2008).
d’Orbcastel, E. R., Blancheton, J.-P. & Aubin, J. Towards environmentally sustainable aquaculture: Comparison between two trout farming systems using life cycle assessment. Aquacultural Engineering 40, 113–119 (2009).
Samuel-Fitwi, B., Nagel, F., Meyer, S., Schroeder, J. & Schulz, C. Comparative life cycle assessment (LCA) of raising rainbow trout (Oncorhynchus mykiss) in different production systems. Aquacultural Engineering 54, 85–92 (2013).
Bodensteiner, L. R., Sheehan, R. J., Wills, P. S., Brandenburg, A. M. & Lewis, W. M. Flowing water: an effective treatment for ichthyophthiriasis. Journal of Aquatic Animal Health 12, 209–219 (2000).
Tieman, D. M. & Goodwin, A. E. Treatments for ich infestations in channel catfish evaluated under static and flow-through water conditions. North American Journal of Aquaculture 63, 293–299 (2001).
Costello, M. J. How sea lice from salmon farms may cause wild salmonid declines in Europe and North America and be a threat to fishes elsewhere. Proceedings of the Royal Society B: Biological Sciences 276, 3385–3394 (2009).
Frazer, L. N. Sea-cage aquaculture, sea lice, and declines of wild fish. Conservation Biology 23, 599–607 (2009).
Rosenberg, A. A. The price of lice. Nature 451, 23 (2008).
Krkošek, M. Host density thresholds and disease control for fisheries and aquaculture. Aquaculture Environment Interactions 1, 21–32 (2010).
Keenleyside, M. H. Some aspects of the schooling behaviour of fish. Behaviour 183–248 (1955).
Hedrick, R. Relationships of the host, pathogen, and environment: implications for diseases of cultured and wild fish populations. Journal of Aquatic Animal Health 10, 107–111 (1998).
Dempster, T., Sanchez-Jerez, P., Bayle-Sempere, J. & Kingsford, M. Extensive aggregations of wild fish at coastal sea-cage fish farms. Hydrobiologia 525, 245–248 (2004).
Dempster, T. et al. Coastal salmon farms attract large and persistent aggregations of wild fish: an ecosystem effect. Marine Ecology Progress Series 385, 1–14 (2009).
Uglem, I., Dempster, T., Bjørn, P.-A., Sanchez-Jerez, P. & Økland, F. High connectivity of salmon farms revealed by aggregation, residence and repeated movements of wild fish among farms. Marine Ecology Progress Series 384, 251–260 (2009).
Dobson, A. & May, R. The effects of parasites on fish populations – theoretical aspects. International Journal for Parasitology 17, 363–370 (1987).
Frazer, L. N., Morton, A. & Krkošek, M. Critical thresholds in sea lice epidemics: evidence, sensitivity and subcritical estimation. Proceedings of the Royal Society B: Biological Sciences 279, 1950–1958 (2012).
Johnson, P. T. & Paull, S. H. The ecology and emergence of diseases in fresh waters. Freshwater Biology 56, 638–657 (2011).
Peeler, E. J. & Feist, S. W. Human intervention in freshwater ecosystems drives disease emergence. Freshwater Biology 56, 705–716 (2011).
Peeler, E. J. & Taylor, N. G. H. The application of epidemiology in aquatic animal health-opportunities and challenges. Veterinary Research 42, 94 (2011).
Burkart, M., Clark, T. & Dickerson, H. Immunization of channel catfish, Ictalurus punctatus Rafinesque, against Ichthyophthirius multifiliis (Fouquet): killed versus live vaccines. Journal of Fish Diseases 13, 401–410 (1990).
Alishahi, M. & Buchmann, K. Temperature-dependent protection against Ichthyophthirius multifiliis following immunisation of rainbow trout using live theronts. Diseases of Aquatic Organisms 72, 269–273 (2006).
Gudding, R. & Van Muiswinkel, W. B. A history of fish vaccination: science-based disease prevention in aquaculture. Fish & Shellfish Immunology 35, 1683–1688 (2013).
Buchmann, K., Sigh, J., Nielsen, C. & Dalgaard, M. Host responses against the fish parasitizing ciliate Ichthyophthirius multifiliis. Veterinary Parasitology 100, 105–116 (2001).
von Gersdorff Jørgensen, L. et al. Rainbow trout (Oncorhynchus mykiss) immune response towards a recombinant vaccine targeting the parasitic ciliate Ichthyophthirius multifiliis. Journal of Fish Diseases 40, 1815–1821 (2017).
Aihua, L. & Buchmann, K. Temperature-and salinity-dependent development of a nordic strain of Ichthyophthirius multifiliis from rainbow trout. Journal of Applied Ichthyology 17, 273–276 (2001).
Ewing, M., Kocan, K. & Ewing, S. Ichthyophthirius multifiliis: morphology of the cyst wall. Transactions of the American Microscopical Society 122–128 (1983).
Adams, P., James, C. & Speas, C. Rainbow trout (Oncorhynchus mykiss) species and conservation assessment. Grand Mesa, Uncompahgre and Gunnison National Forests (2008).
Ward, A. J., Webster, M. M. & Hart, P. J. Intraspecific food competition in fishes. Fish and Fisheries 7, 231–261 (2006).
Benton, T. G. & Grant, A. Elasticity analysis as an important tool in evolutionary and population ecology. Trends in Ecology & Evolution 14, 467–471 (1999).
Grant, A. & Benton, T. G. Elasticity analysis for density-dependent populations in stochastic environments. Ecology 81, 680–693 (2000).
Caswell, H. & Gassen, N. S. The sensitivity analysis of population projections. Demographic Research 33, 801–840 (2015).
Mailleret, L. & Lemesle, V. A note on semi-discrete modelling in the life sciences. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 367, 4779–4799 (2009).
Rigby, M. C., Hechinger, R. F. & Stevens, L. Why should parasite resistance be costly? Trends in Parasitology 18, 116–120 (2002).
Randall, C., Bromage, N., Duston, J. & Symes, J. Photoperiod-induced phase-shifts of the endogenous clock controlling reproduction in the rainbow trout: a circannual phase–response curve. Reproduction 112, 399–405 (1998).
Dalgaard, M., Buchmann, K. & Li, A. Immunization of rainbow trout fry with Ichthyophthirius multifiliis sonicate: protection of host and immunological changes. Bulletin-European Association of Fish Pathologists 22, 288–297 (2002).
Source: Ecology - nature.com
