in

DNA barcode reference library for the West Sahara-Sahel reptiles

  • Ceballos, G. et al. Accelerated modern human – induced species losses: entering the sixth mass extinction. Sci. Adv. 1, e1400253, https://doi.org/10.1126/sciadv.1400253 (2015).

    ADS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Hoffmann, M. et al. The impact of conservation on the status of the world’s vertebrates. Science 330, 1503–1509, https://doi.org/10.1126/science.1194442 (2010).

    ADS 
    CAS 
    Article 
    PubMed 

    Google Scholar 

  • Whittaker, R. J. et al. Conservation biogeography: assessment and prospect. Divers. Distrib. 11, 3–23, https://doi.org/10.1111/j.1366-9516.2005.00143.x (2005).

    Article 

    Google Scholar 

  • Dirzo, R. & Raven, P. H. Global state of biodiversity and loss. Annu. Rev. Env. Resour. 28, 137–167, https://doi.org/10.1146/annurev.energy.28.050302.105532 (2003).

    Article 

    Google Scholar 

  • Dinerstein, E. et al. An ecoregion-based approach to protecting half the terrestrial realm. BioScience 67, 534–545, https://doi.org/10.1093/biosci/bix014 (2017).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Brito, J. C. et al. Unravelling biodiversity, evolution and threats to conservation in the Sahara-Sahel. Biol. Rev. 89, 215–231, https://doi.org/10.1111/brv.12049 (2014).

    Article 
    PubMed 

    Google Scholar 

  • Sampaio, M. et al. Beyond the comfort zone: amphibian diversity and distribution in the West Sahara-Sahel using mtDNA and nuDNA barcoding and spatial modelling. Conserv. Genet. 22(2), 233–248, https://doi.org/10.1007/s10592-021-01331-8 (2021).

    Article 

    Google Scholar 

  • Velo-Antón, G. et al. DNA barcode reference library for the West Sahara-Sahel reptiles, figshare, https://doi.org/10.6084/m9.figshare.20338335 (2022).

  • Carranza, S., Arnold, E. N., Geniez, P., Roca, J. & Mateo, J. A. Radiation, multiple dispersal and parallelism in the skinks, Chalcides and Sphenops (Squamata: Scincidae), with comments on Scincus and Scincopus and the age of the Sahara Desert. Mol. Phyl. Evol. 46, 1071–1094, https://doi.org/10.1016/j.ympev.2007.11.018 (2008).

    CAS 
    Article 

    Google Scholar 

  • Gonçalves, D. V. et al. Phylogeny of North African Agama lizards (Reptilia: Agamidae) and the role of the Sahara desert in vertebrate speciation. Mol. Phyl. Evol. 64, 582–591, https://doi.org/10.1016/j.ympev.2012.05.007 (2012).

    Article 

    Google Scholar 

  • Gonçalves, D. V. et al. The role of climatic cycles and trans-Saharan migration corridors in species diversification: biogeography of Psammophis schokari group in North Africa. Mol. Phyl. Evol. 118, 64–74, https://doi.org/10.1016/j.ympev.2017.09.009 (2018).

    Article 

    Google Scholar 

  • Gonçalves, D. V. et al. Assessing the role of aridity-induced vicariance and ecological divergence in species diversification in North-West Africa using Agama lizards. Biol. J. Linn. Soc. 124, 363–380, https://doi.org/10.1093/biolinnean/bly055 (2018).

    Article 

    Google Scholar 

  • Metallinou, M. et al. Conquering the Sahara and Arabian deserts: Systematics and biogeography of Stenodactylus geckos (Reptilia: Gekkonidae). BMC Evol. Biol. 12, 258, https://doi.org/10.1186/1471-2148-12-258 (2012).

    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Metallinou, M. et al. Species on the rocks: Systematics and biogeography of the rock-dwelling Ptyodactylus geckos (Squamata: Phyllodactylidae) in North Africa and Arabia. Mol. Phyl. Evol. 85, 208–220, https://doi.org/10.1016/j.ympev.2015.02.010 (2015).

    Article 

    Google Scholar 

  • Kapli, P. et al. Historical biogeography of the lacertid lizard Mesalina in North Africa and the Middle East. J. Biogeog. 42, 267–279, https://doi.org/10.1111/jbi.12420 (2015).

    Article 

    Google Scholar 

  • Tamar, K., Geniez, P., Brito, J. C. & Crochet, P. A. Systematic revision of Acanthodactylus busacki (Squamata: Lacertidae) with a description of a new species from Morocco. Zootaxa 4276(3), 357–386, https://doi.org/10.11646/ZOOTAXA.4276.3.3 (2017).

    Article 

    Google Scholar 

  • Velo-Antón, G., Martínez-Freiría, F., Pereira, P., Crochet, P.-A. & Brito, J. C. Living on the edge: ecological and genetic connectivity of the Spiny-footed lizard, Acanthodactylus aureus, confirms the Atlantic Sahara desert as biogeographic corridor and centre of lineage diversification. J. Biogeog. 45, 1031–1042, https://doi.org/10.1111/jbi.13176 (2018).

    Article 

    Google Scholar 

  • Vale, C. G., Pimm, S. L. & Brito, J. C. Overlooked mountain rock pools in deserts are critical local hotspots of biodiversity. PLoS ONE 10, e0118367, https://doi.org/10.1371/journal.pone.0118367 (2015).

    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Brito, J. C. et al. Conservation Biogeography of the Sahara-Sahel: additional protected areas are needed to secure unique biodiversity. Divers. Distrib. 22, 371–384, https://doi.org/10.1111/ddi.12416 (2016).

    Article 

    Google Scholar 

  • Hawlitschek, O. et al. Comprehensive DNA barcoding of the herpetofauna of Germany. Mol. Ecol. Res. 16, 242–253, https://doi.org/10.1111/1755-0998.12416 (2016).

    CAS 
    Article 

    Google Scholar 

  • Hebert, P. D. N., Cywinska, A., Ball, S. L. & Jeremy, R. Biological Identifications through DNA Barcodes. P. Roy. Soc. Lond. B Bio. 270, 313–321, https://doi.org/10.1098/rspb.2002.2218 (2003).

    CAS 
    Article 

    Google Scholar 

  • Murphy, R. W. et al. Cold Code: the global initiative to DNA barcode amphibians and nonavian reptiles. Mol. Ecol. Res. 13, 161–167, https://doi.org/10.1111/1755-0998.12050 (2013).

    CAS 
    Article 

    Google Scholar 

  • Vasconcelos, R. et al. Unexpectedly high levels of cryptic diversity uncovered by a complete DNA barcoding of reptiles of the Socotra Archipelago. PLoS ONE 11, e0149985, https://doi.org/10.1371/journal.pone.0149985 (2016).

    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Krishnamurthy, P. K. & Francis, R. A. A critical review on the utility of DNA barcoding in biodiversity conservation. Biodiv. Conserv. 21, 1901–1919, https://doi.org/10.1007/s10531-012-0306-2 (2012).

    Article 

    Google Scholar 

  • DeSalle, R. & Amato, G. The expansion of conservation genetics. Nat. Rev. Genet. 5, 702–12, https://doi.org/10.7312/amat12832-006 (2004).

    CAS 
    Article 
    PubMed 

    Google Scholar 

  • Campos, J. C. & Brito, J. C. Mapping underrepresented land cover heterogeneity in arid regions: the Sahara-Sahel example. ISPRS J. Photogramm 146, 211–220, https://doi.org/10.1016/j.isprsjprs.2018.09.012 (2018).

    Article 

    Google Scholar 

  • Brito, J. C. et al. Armed conflicts and wildlife decline: Challenges and recommendations for effective conservation policy in the Sahara‐Sahel. Conserv. Lett. 11(5), e12446, https://doi.org/10.1111/conl.12446 (2018).

    Article 

    Google Scholar 

  • Weiss, D. J. et al. A global map of travel time to cities to assess inequalities in accessibility in 2015. Nature 553, 333–336, https://doi.org/10.1038/nature25181 (2018).

    ADS 
    CAS 
    Article 
    PubMed 

    Google Scholar 

  • Geniez, P., Mateo, J. A. & Bons, J. A checklist of the amphibians and reptiles of Western Sahara (Amphibia, Reptilia). Herpetozoa 133, 149–63 (2000).

    Google Scholar 

  • Geniez, P., Mateo, J. A., Geniez, M. & Pether, J. The Amphibians and Reptiles of the Western Sahara. An Atlas and Field Guide. Chimaira Editions (2004). Available at https://doi.org/10.1643/0045-8511(2007)2007[772:TAAROT]2.0.CO;2

  • Trape, J. – F. & Mané, Y. Guide des Serpents d’Afrique Occidentale: Savane et Désert. IRD éditions (2006).

  • Trape, J.-F., Trape, S. & Chirio, L. Lézards, Crocodiles et Tortues d’Afrique Occidentale et du Sahara. IRD éditions (2012).

  • Dabney, J. et al. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc. Natl. Acad. Sci. USA 110, 15758–15763, https://doi.org/10.1073/pnas.1314445110 (2013).

    ADS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Nagy, Z. T., Sonet, G., Glaw, F. & Vences, M. First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers. PLoS ONE 7, e34506, https://doi.org/10.1371/journal.pone.0034506 (2012).

    ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3, 294–299 (1994).

    CAS 
    PubMed 

    Google Scholar 

  • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids. Res. 32, 1792–1797, https://doi.org/10.1093/nar/gkh340 (2004).

    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Kimura, M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111–120, https://doi.org/10.1007/BF01731581 (1980).

    ADS 
    CAS 
    Article 
    PubMed 

    Google Scholar 

  • Brown, S. D. et al. Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding. Mol. Ecol. Res. 12, 562–565, https://doi.org/10.1111/j.1755-0998.2011.03108.x (2012).

    ADS 
    Article 

    Google Scholar 

  • Meier, R., Shiyang, K., Vaidya, G. & Ng, P. K. L. DNA barcoding and taxonomy in diptera: a tale of high intraspecific variability and low identification success. Syst. Biol. 55, 715–728, https://doi.org/10.1080/10635150600969864 (2006).

    Article 
    PubMed 

    Google Scholar 

  • Pizzigalli, C. et al. Phylogeographic diversification of the Mesalina olivieri species complex (Squamata: Lacertidae) with the description of a new species and a new subspecies endemic from North West Africa. J. Zool. Syst. Evol. Res. 59, 2321–2349, https://doi.org/10.1111/jzs.12516 (2021).

    Article 

    Google Scholar 

  • Mediannikov, O., Trape, S. & Trape, J.-F. A molecular study of the genus Agama (Squamata: Agamidae) in West Africa, with description of two new species and a review of the taxonomy, geographic distribution, and ecology of currently recognized species. Russ. J. Herpetol. 19, 115–142, https://doi.org/10.30906/1026-2296-2012-19-2-115-142 (2012).

    Article 

    Google Scholar 

  • Wagner, P., Wilms, T. M., Bauer, A. & Böhme, W. Studies on African Agama. V. On the origin of Lacerta agama Linnaeus, 1758 (Squamata: Agamidae). Bonn. zool. Beitr. 56, 215–223 (2009).

    Google Scholar 


  • Source: Ecology - nature.com

    Risk assessment for the native anurans from an alien invasive species, American bullfrogs (Lithobates catesbeianus), in South Korea

    Modeling geographical invasions of Solenopsis invicta influenced by land-use patterns