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Machine learning prediction of connectivity, biodiversity and resilience in the Coral Triangle

  • Ravindran, S. Coral reefs at a tipping point. Proc. Natl Acad. Sci. 113, 5140–5141 (2016).

    CAS 

    Google Scholar 

  • Lenton, T. M. et al. Climate tipping points—too risky to bet against. Nature 575, 592–595 (2019).

    CAS 

    Google Scholar 

  • Veron, J. E. N. et al. Delineating the Coral Triangle. Galaxea J. Coral Reef. Stud. 11, 91–100 (2009).

    Google Scholar 

  • Hoegh-Guldberg, O. et al. Coral Reefs Under Rapid Climate Change and Ocean Acidification. Science 318, 1737–1742 (2007).

    CAS 

    Google Scholar 

  • Brown, C., Corcoran, E. & Herkenrath, P. Marine and coastal ecosystems and human well-being: a synthesis report based on the findings of the Millennium Ecosystem Assessment. (2006).

  • Heinze, C. et al. The quiet crossing of ocean tipping points. Proc. Natl Acad. Sci. 118, e2008478118 (2021).

    CAS 

    Google Scholar 

  • Barber, P. H. The challenge of understanding the Coral Triangle biodiversity hotspot. J. Biogeogr. 36, 1845–1846 (2009).

    Google Scholar 

  • Ekman, S. Zoogeography of the Sea. (Sidgwick & Jackson, 1953).

  • Ladd, H. S. Origin of the Pacific island molluscan fauna. Am. J. Sci. 256, 137–150 (1960).

    Google Scholar 

  • Woodland, D. J. Zoogeography of the Siganidae (Pisces): an interpretation of distribution and richness patterns. Bull. Mar. Sci. 33, 713–717 (1983).

    Google Scholar 

  • Loveland, T. R. & Merchant, J. M. Ecoregions and ecoregionalization: geographical and ecological perspectives. Environ. Manag. 34, S1–S13 (2004).

    Google Scholar 

  • Levins, R. Some Demographic and Genetic Consequences of Environmental Heterogeneity for Biological Control. Bull. Entomol. Soc. Am. 15, 237–240 (1969).

    Google Scholar 

  • Obura, D. The Diversity and Biogeography of Western Indian Ocean Reef-Building Corals. PLoS One. 7, e45013 (2012).

    CAS 

    Google Scholar 

  • Fontoura, L. et al. Protecting connectivity promotes successful biodiversity and fisheries conservation. Science 375, 336–340 (2022).

    CAS 

    Google Scholar 

  • Roberts, C. M. Connectivity and Management of Caribbean Coral Reefs. Science 278, 1454–1457 (1997).

    CAS 

    Google Scholar 

  • Ayre, D. J. & Hughes, T. P. Climate change, genotypic diversity and gene flow in reef-building corals: Gene flow in reef building corals. Ecol. Lett. 7, 273–278 (2004).

    Google Scholar 

  • Graham, N. A. et al. Dynamic fragility of oceanic coral reef ecosystems. Proc. Natl Acad. Sci. 103, 8425–8429 (2006).

    CAS 

    Google Scholar 

  • McClanahan, T. R. et al. Prioritizing Key Resilience Indicators to Support Coral Reef Management in a Changing Climate. PLoS One. 7, e42884 (2012).

    CAS 

    Google Scholar 

  • Gilmour, J. P., Smith, L. D., Heyward, A. J., Baird, A. H. & Pratchett, M. S. Recovery of an Isolated Coral Reef System Following Severe Disturbance. Science 340, 69–71 (2013).

    Google Scholar 

  • Grayson, N., Clements, C. S., Towner, A. A., Beatty, D. S. & Hay, M. E. Did the historic overharvesting of sea cucumbers make coral more susceptible to pathogens? Coral Reefs. 41, 447–453 (2022).

    Google Scholar 

  • Spalding, M. D. et al. Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas. BioScience 57, 573–583 (2007).

    Google Scholar 

  • Berline, L., Rammou, A.-M., Doglioli, A., Molcard, A. & Petrenko, A. A Connectivity-Based Eco-Regionalization Method of the Mediterranean Sea. PLoS ONE. 9, e111978 (2014).

    Google Scholar 

  • Ser-Giacomi, E., Rossi, V., López, C. & Hernández-García, E. Flow networks: A characterization of geophysical fluid transport. Chaos Interdiscip. J. Nonlinear Sci. 25, 036404 (2015).

    Google Scholar 

  • Thompson, D. M. et al. Variability in oceanographic barriers to coral larval dispersal: Do currents shape biodiversity? Prog. Oceanogr. 165, 110–122 (2018).

    Google Scholar 

  • Treml, E. A., Halpin, P. N., Urban, D. L. & Pratson, L. F. Modeling population connectivity by ocean currents, a graph-theoretic approach for marine conservation. Landsc. Ecol. 23, 19–36 (2008).

    Google Scholar 

  • Liu, G., Bracco, A., Quattrini, A. M. & Herrera, S. Kilometer-Scale Larval Dispersal Processes Predict Metapopulation Connectivity Pathways for Paramuricea biscaya in the Northern Gulf of Mexico. Front. Mar. Sci. 8, 790927 (2021).

    Google Scholar 

  • Fountalis, I., Dovrolis, C., Bracco, A., Dilkina, B. & Keilholz, S. δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains. Appl. Netw. Sci. 3, 21 (2018).

    Google Scholar 

  • Falasca, F., Bracco, A., Nenes, A. & Fountalis, I. Dimensionality Reduction and Network Inference for Climate Data Using δ‐MAPS: Application to the CESM Large Ensemble Sea Surface Temperature. J. Adv. Model. Earth Syst. 11, 1479–1515 (2019).

    Google Scholar 

  • Novi, L., Bracco, A. & Falasca, F. Uncovering marine connectivity through sea surface temperature. Sci. Rep. 11, 8839 (2021).

    CAS 

    Google Scholar 

  • Kleypas, J. A., Castruccio, F. S., Curchitser, E. N. & Mcleod, F. The impact of ENSO on coral heat stress in the western equatorial Pacific. Glob. Change Biol. 21, 2525–2539 (2015).

    Google Scholar 

  • GLOBAL_REANALYSIS_001_030. Global Ocean Physics Reanalysis GLORYS12V1 1/12° product. MERCATOR GLORYS12V1 (global-reanalysis-001-030-monthly). E.U. Copernicus Marine Service Information (CMEMS). https://doi.org/10.48670/moi-00021.

  • Lellouche, J.-M. et al. The Copernicus Global 1/12° Oceanic and Sea Ice GLORYS12 Reanalysis. Front. Earth Sci. 9, 698876 (2021).

    Google Scholar 

  • Treml, E. A. & Halpin, P. N. Marine population connectivity identifies ecological neighbors for conservation planning in the Coral Triangle: Ecological neighbors in conservation. Conserv. Lett. 5, 441–449 (2012).

    Google Scholar 

  • Meyers, G. Variation of Indonesian throughflow and the El Niño-Southern Oscillation. J. Geophys. Res. Oceans 101, 12255–12263 (1996).

    Google Scholar 

  • Wolfram Research (2012), FindGraphCommunities, Wolfram Language function. https://reference.wolfram.com/language/ref/FindGraphCommunities.html (updated 2015).

  • MacArthur, R. H. & Wilson, E. O. The theory of island biogeography. In The Theory of Island Biogeography (Princeton university press, 2016).

  • Brin, S. & Page, L. The anatomy of a large-scale hypertextual Web search engine. Comput. Netw. ISDN Syst. 30, 107–117 (1998).

    Google Scholar 

  • Wolfram Research (2010), PageRankCentrality, Wolfram Language function. https://reference.wolfram.com/language/ref/PageRankCentrality.html (Updated 2015).

  • NOAA Coral Reef Watch program, 20180813, NOAA Coral Reef Watch Version 3.1 Daily Global 5km Satellite Coral Bleaching Heat Stress Monitoring Product Suite: NOAA Coral Reef Watch program, College Park, Maryland, USA. https://coralreefwatch.noaa.gov/product/5km/.

  • Liu, G. et al. Reef-Scale Thermal Stress Monitoring of Coral Ecosystems: New 5-km Global Products from NOAA Coral Reef Watch. Remote Sens. 6, 11579–11606 (2014).

    Google Scholar 

  • Liu, G. et al. NOAA Coral Reef Watch’s 5km Satellite Coral Bleaching Heat Stress Monitoring Product Suite Version 3 and Four-Month Outlook Version 4. 32, 7 (2017).

  • Claar, D. C., Szostek, L., McDevitt-Irwin, J. M., Schanze, J. J. & Baum, J. K. Global patterns and impacts of El Niño events on coral reefs: A meta-analysis. PLOS ONE 13, e0190957 (2018).

    Google Scholar 

  • Sully, S., Burkepile, D. E., Donovan, M. K., Hodgson, G. & van Woesik, R. A global analysis of coral bleaching over the past two decades. Nat. Commun. 10, 1264 (2019).

    CAS 

    Google Scholar 

  • Darling, E. S. et al. Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nat. Ecol. Evol. 3, 1341–1350 (2019).

    Google Scholar 

  • Dance, A. These corals could survive climate change—and help save the world’s reefs. Nature 575, 580–582 (2019).

    CAS 

    Google Scholar 

  • Renema, W. et al. Hopping Hotspots: Global Shifts in Marine Biodiversity. Science 321, 654–657 (2008).

    CAS 

    Google Scholar 

  • Weiss, T. L., Denniston, R. F., Wanamaker, A. D., Villarini, G. & von der Heydt, A. S. El Niño–Southern Oscillation–like variability in a late Miocene Caribbean coral. Geology 45, 643–646 (2017).

    Google Scholar 

  • Watanabe, T. et al. Permanent El Niño during the Pliocene warm period not supported by coral evidence. Nature 471, 209–211 (2011).

    CAS 

    Google Scholar 

  • Von Der Heydt, A. S. & Dijkstra, H. A. The impact of ocean gateways on ENSO variability in the Miocene. Geol. Soc. Lond. Spec. Publ. 355, 305–318 (2011).

    Google Scholar 

  • Yasuhara, M. et al. Past and future decline of tropical pelagic biodiversity. Proc. Natl Acad. Sci. 117, 12891–12896 (2020).

    CAS 

    Google Scholar 

  • Falasca, F., Crétat, J., Bracco, A., Braconnot, P. & Marti, O. Climate change in the Indo-Pacific basin from mid- to late Holocene. Clim. Dyn. 59, 753–766 (2022).

    Google Scholar 

  • Treml, E. A., Ford, J. R., Black, K. P. & Swearer, S. E. Identifying the key biophysical drivers, connectivity outcomes, and metapopulation consequences of larval dispersal in the sea. Mov. Ecol. 3, 17 (2015).

    Google Scholar 

  • Hackerott, S., Martell, H. A. & Eirin-Lopez, J. M. Coral environmental memory: causes, mechanisms, and consequences for future reefs. Trends Ecol. Evol. 36, 1011–1023 (2021).

    Google Scholar 

  • Ogle, K. et al. Quantifying ecological memory in plant and ecosystem processes. Ecol. Lett. 18, 221–235 (2015).

    Google Scholar 

  • Peterson, G. D. Contagious Disturbance, Ecological Memory, and the Emergence of Landscape Pattern. Ecosystems 5, 329–338 (2002).

    Google Scholar 

  • Thomas, L., López, E. H., Morikawa, M. K. & Palumbi, S. R. Transcriptomic resilience, symbiont shuffling, and vulnerability to recurrent bleaching in reef‐building corals. Mol. Ecol. 28, 3371–3382 (2019).

    Google Scholar 

  • Dziedzic, K. E., Elder, H., Tavalire, H. & Meyer, E. Heritable variation in bleaching responses and its functional genomic basis in reef‐building corals (Orbicella faveolata). Mol. Ecol. 28, 2238–2253 (2019).

    Google Scholar 

  • Ainsworth, T. D. et al. Climate change disables coral bleaching protection on the Great Barrier Reef. Science 352, 338–342 (2016).

    CAS 

    Google Scholar 

  • Harrison, H. B., Bode, M., Williamson, D. H., Berumen, M. L. & Jones, G. P. A connectivity portfolio effect stabilizes marine reserve performance. Proc. Natl Acad. Sci. 117, 25595–25600 (2020).

    CAS 

    Google Scholar 

  • Leeuwenburgh, O. & Stammer, D. The Effect of Ocean Currents on Sea Surface Temperature Anomalies. J. Phys. Oceanogr. 31, 2340–2358 (2001).

    Google Scholar 

  • Box, G. E., Jenkins, G. M. & Reinsel, G. C. Time series analysis: forecasting and control. (Wiley, 2011).

  • Falasca, F. & Bracco, A. Exploring the tropical Pacific manifold in models and observations. Phys. Rev. X 12, 021054 (2022).

    CAS 

    Google Scholar 

  • NOAA (National Oceanic and Atmospheric Administration), (2019a). Nino regions. https://www.cpc.ncep.noaa.gov/products/analysis_monitoring/ensostuff/nino_regions.shtml.

  • NOAA (National Oceanic and Atmospheric Administration), (2019b). Cold and warm episodes by season. https://origin.cpc.ncep.noaa.gov/products/analysis_monitoring/ensostuff/ONI_v5.php.

  • Baird, A. et al. Coral Spawning Database. 10552719 Bytes https://doi.org/10.25405/DATA.NCL.13082333.V1 (2020).

  • UNEP-WCMC, WorldFish Centre, WRI, TNC (2021). Global distribution of warm-water coral reefs, compiled from multiple sources including the Millennium Coral Reef Mapping Project. Version 4.1. Includes contributions from IMaRS-USF and IRD (2005), IMaRS-USF (2005) and Spalding et al. (2001). Cambridge (UK): UN Environment World Conservation Monitoring Centre. Data https://doi.org/10.34892/t2wk-5t34.

  • IMaRS-USF, IRD (Institut de Recherche pour le Developpement) (2005). Millennium Coral Reef Mapping Project. Validated maps. Cambridge (UK): UNEP World Conservation Monitoring Centre.

  • IMaRS-USF (Institute for Marine Remote Sensing-University of South Florida) (2005). Millennium Coral Reef Mapping Project. Unvalidated maps. These maps are unendorsed by IRD, but were further interpreted by UNEP World Conservation Monitoring Centre. Cambridge (UK): UNEP World Conservation Monitoring Centre.

  • Spalding, M., Ravilious, C. & Green, E. World atlas of coral reefs. Choice Rev. Online. 39, 39-2540–39–2540 (2002).

    Google Scholar 


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