Flint, H. J., Scott, K. P., Louis, P. & Duncan, S. H. The role of the gut microbiota in nutrition and health. Nat. Rev. Gastroenterol. Hepatol. 9, 577. https://doi.org/10.1038/nrgastro.2012.156 (2012).
Nicholson, J. K. et al. Host-gut microbiota metabolic interactions. Science 336, 1262–1267. https://doi.org/10.1126/science.1223813 (2012).
Zhang, Z., Jiao, S., Li, X. & Li, M. Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets. Sci. Rep. 8, 15634 (2018).
Engel, P. & Moran, N. A. The gut microbiota of insects–diversity in structure and function. FEMS Microbiol. Rev. 37, 699–735 (2013).
Paine, T., Raffa, K. & Harrington, T. Interactions among scolytid bark beetles, their associated fungi, and live host conifers. Annu. Rev. Entomol. 42, 179–206 (1997).
Yun, J. H. et al. Insect gut bacterial diversity determined by environmental habitat, diet, developmental stage, and phylogeny of host. Appl. Environ. Microbiol. 80, 5254–5264 (2014).
Fukatsu, T. & Ishikawa, H. A novel eukaryotic extracellular symbiont in an aphid, Astegopteryx styraci (Homoptera, Aphididae, Hormaphidinae). J. Insect Physiol. 38, 765–773 (1992).
Malacrinò, A., Schena, L., Campolo, O., Laudani, F. & Palmeri, V. Molecular analysis of the fungal microbiome associated with the olive fruit fly Bactrocera oleae. Fungal Ecol. 18, 67–74 (2015).
Vega, F. E. & Blackwell, M. Insect-Fungal Associations: Ecology and Evolution (Oxford University Press, Oxford, 2005).
Stefanini, I. Yeast-insect associations: it takes guts. Yeast 35, 315–330 (2018).
Boyce, A. Bionomics of the walnut husk fly, Rhagoletis completa. Hilgardia 8, 363–579 (1934).
Fanson, B. G. & Taylor, P. W. Protein: carbohydrate ratios explain life span patterns found in Queensland fruit fly on diets varying in yeast: sugar ratios. Age 34, 1361–1368 (2012).
Moadeli, T., Mainali, B., Ponton, F. & Taylor, P. Evaluation of yeasts in gel larval diet for Queensland fruit fly, Bactrocera tryoni. J. Appl. Entomol. 142, 679–688 (2018).
Nash, W. J. & Chapman, T. Effect of dietary components on larval life history characteristics in the Medfly (Ceratitis capitata: Diptera, Tephritidae). PLoS ONE 9, e86029 (2014).
Nestel, D. & Nemny-Lavy, E. Nutrient balance in medfly, Ceratitis capitata, larval diets affects the ability of the developing insect to incorporate lipid and protein reserves. Entomol. Exp. Appl. 126, 53–60. https://doi.org/10.1111/j.1570-7458.2007.00639.x (2008).
Nestel, D., Nemny-Lavy, E. & Chang, C. L. Lipid and protein loads in pupating larvae and emerging adults as affected by the composition of Mediterranean fruit fly (Ceratitis capitata) meridic larval diets. Arch. Insect Biochem. Physiol. 56, 97–109. https://doi.org/10.1002/arch.20000 (2004).
Mori, B. A. et al. Enhanced yeast feeding following mating facilitates control of the invasive fruit pest Drosophila suzukii. J. Appl. Ecol. 54, 170–177. https://doi.org/10.1111/1365-2664.12688 (2017).
Stamps, J. A., Yang, L. H., Morales, V. M. & Boundy-Mills, K. L. Drosophila regulate yeast density and increase yeast community similarity in a natural substrate. PLoS ONE 7, e42238. https://doi.org/10.1371/journal.pone.0042238 (2012).
Anagnostou, C., Dorsch, M. & Rohlfs, M. Influence of dietary yeasts on Drosophila melanogaster life-history traits. Entomol. Exp. Appl. 136, 1–11. https://doi.org/10.1111/j.1570-7458.2010.00997.x (2010).
Rohlfs, M. & Kürschner, L. Saprophagous insect larvae, Drosophila melanogaster, profit from increased species richness in beneficial microbes. J. Appl. Entomol. 134, 667–671. https://doi.org/10.1111/j.1439-0418.2009.01458.x (2010).
Menezes, C. et al. A Brazilian social bee must cultivate fungus to survive. Curr. Biol. 25, 2851–2855. https://doi.org/10.1016/j.cub.2015.09.028 (2015).
Yun, J. H., Jung, M. J., Kim, P. S. & Bae, J. W. Social status shapes the bacterial and fungal gut communities of the honey bee. Sci. Rep. 8, 2019. https://doi.org/10.1038/s41598-018-19860-7 (2018).
DeLeon-Rodriguez, C. M. & Casadevall, A. Cryptococcus neoformans: tripping on acid in the phagolysosome. Front. Microbiol. 7, 164. https://doi.org/10.3389/fmicb.2016.00164 (2016).
Hajek, A. & St. Leger, R. Interactions between fungal pathogens and insect hosts. Annu. Rev. Entomol. 39, 293–322. https://doi.org/10.1146/annurev.en.39.010194.001453 (1994).
Lu, H. L., Wang, J. B., Brown, M. A., Euerle, C. & Leger, R. J. S. Identification of Drosophila mutants affecting defense to an entomopathogenic fungus. Sci. Rep. 5, 12350 (2015).
Almeida, J. E., Batista Filho, A., Oliveira, F. C. & Raga, A. Pathogenicity of the entomopathogenic fungi and nematode on medfly Ceratitis capitata (Wied.)(Diptera: Tephritidae). BioAssay https://doi.org/10.14295/BA.v2 (2007).
Lacey, L. A., Frutos, R., Kaya, H. & Vail, P. Insect pathogens as biological control agents: do they have a future?. Biol. Control 21, 230–248 (2001).
Ortu, S., Cocco, A. & Dau, R. Evaluation of the entomopathogenic fungus Beauveria bassiana strain ATCC 74040 for the management of Ceratitis capitata. B. Insectol. 62, 245–252 (2009).
Quesada-Moraga, E., Ruiz-García, A. & Santiago-Alvarez, C. Laboratory evaluation of entomopathogenic fungi Beauveria bassiana and Metarhizium anisopliae against puparia and adults of Ceratitis capitata (Diptera: Tephritidae). J. Econ. Entomol. 99, 1955–1966 (2006).
Clarke, A. R., Powell, K. S., Weldon, C. W. & Taylor, P. W. The ecology of Bactrocera tryoni (Diptera: Tephritidae): what do we know to assist pest management?. Ann. Appl. Biol. 158, 26–54 (2011).
Dominiak, B. C. & Daniels, D. Review of the past and present distribution of Mediterranean fruit fly (Ceratitis capitata Wiedemann) and Queensland fruit fly (Bactrocera tryoni Froggatt) in Australia. Aust. J. Entomol. 51, 104–115 (2012).
Sutherst, R. W., Collyer, B. S. & Yonow, T. The vulnerability of Australian horticulture to the Queensland fruit fly, Bactrocera (Dacus) tryoni, under climate change. Aust. J. Agric. Res. 51, 467–480 (2000).
Dominiak, B., Westcott, A. & Barchia, I. Release of sterile Queensland fruit fly, Bactrocera tryoni (Froggatt) (Diptera: Tephritidae), at Sydney, Australia. Aust. J. Exp. Agric. 43, 519–528 (2003).
Deutscher, A. T. et al. Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae. Microbiome 6, 85 (2018).
Drew, R., Courtice, A. & Teakle, D. Bacteria as a natural source of food for adult fruit flies (Diptera: Tephritidae). Oecologia 60, 279–284. https://doi.org/10.1007/BF00376839 (1983).
Lloyd, A., Drew, R., Teakle, D. & Hayward, A. Bacteria associated with some Dacus species (Diptera: Tephritidae) and their host fruit in Queensland. Aust. J. Biol. Sci. 39, 361–368 (1986).
Morrow, J. L., Frommer, M., Shearman, D. C. & Riegler, M. The microbiome of field-caught and laboratory-adapted Australian tephritid fruit fly species with different host plant use and specialisation. Microb. Ecol. 70, 498–508 (2015).
Murphy, K. M., Teakle, D. S. & MacRae, I. C. Kinetics of colonization of adult Queensland fruit flies (Bactrocera tryoni) by dinitrogen-fixing alimentary tract bacteria. Appl. Environ. Microbiol. 60, 2508–2517 (1994).
Thaochan, N., Drew, R., Hughes, J., Vijaysegaran, S. & Chinajariyawong, A. Alimentary tract bacteria isolated and identified with API-20E and molecular cloning techniques from Australian tropical fruit flies Bactrocera cacuminata and B. tryoni. J. Insect Sci. 10, 131 (2010).
Majumder, R., Sutcliffe, B., Taylor, P. W. & Chapman, T. A. Next-Generation Sequencing reveals relationship between the larval microbiome and food substrate in the polyphagous Queensland fruit fly. Sci. Rep. 9, 1–12 (2019).
Shuttleworth, L. A., Khan, M. A. M., Collins, D., Osborne, T. & Reynolds, O. L. Wild bacterial probiotics fed to larvae of mass-reared Queensland fruit fly [Bactrocera tryoni (Froggatt)] do not impact long-term survival, mate selection, or locomotor activity. Insect Sci. 27, 745–755 (2020).
Shuttleworth, L. A. et al. A walk on the wild side: gut bacteria fed to mass-reared larvae of Queensland fruit fly [Bactrocera tryoni (Froggatt)] influence development. BMC Biotechnol. 19, 1–11 (2019).
Woruba, D. N. et al. Diet and irradiation effects on the bacterial community composition and structure in the gut of domesticated teneral and mature Queensland fruit fly, Bactrocera tryoni (Diptera: Tephritidae). BMC Microbiol. 19, 281 (2019).
Majumder, R., Sutcliffe, B., Chapman, T. A. & Taylor, P. W. Microbiome of the Queensland fruit fly through metamorphosis. Microorganisms 8, 795 (2020).
Deutscher, A. T., Reynolds, O. L. & Chapman, T. A. Yeast: an overlooked component of Bactrocera tryoni (Diptera: Tephritidae) larval gut microbiota. J. Econ. Entomol. 110, 298–300 (2016).
Piper, A. M., Farnier, K., Linder, T., Speight, R. & Cunningham, J. P. Two gut-associated yeasts in a tephritid fruit fly have contrasting effects on adult attraction and larval survival. J. Chem. Ecol. 43, 891–901 (2017).
Toju, H., Tanabe, A. S., Yamamoto, S. & Sato, H. High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS ONE 7, e40863 (2012).
Schmidt, P. A. et al. Illumina metabarcoding of a soil fungal community. Soil Biol. Biochem. 65, 128–132 (2013).
Yun, J. H., Jung, M. J., Kim, P. S. & Bae, J. W. Social status shapes the bacterial and fungal gut communities of the honey bee. Sci. Rep. 8, 1–11 (2018).
Ravenscraft, A., Berry, M., Hammer, T., Peay, K. & Boggs, C. Structure and function of the bacterial and fungal gut microbiota of Neotropical butterflies. Ecol. Monogr. 89, e01346 (2019).
Mohammed, W. S., Ziganshina, E. E., Shagimardanova, E. I., Gogoleva, N. E. & Ziganshin, A. M. Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae). Sci. Rep. 8, 10073 (2018).
Sutcliffe, B. et al. Diverse fungal lineages in subtropical ponds are altered by sediment-bound copper. Fungal Ecol. 34, 28–42 (2018).
Hamby, K. A., Hernández, A., Boundy-Mills, K. & Zalom, F. G. Associations of yeasts with spotted-wing Drosophila (Drosophila suzukii; Diptera: Drosophilidae) in cherries and raspberries. Appl. Environ. Microbiol. 78, 4869–4873 (2012).
Kurtzman, C., Fell, J. W. & Boekhout, T. The Yeasts: A Taxonomic Study (Elsevier, Amsterdam, 2011).
Marchesi, J. R. Prokaryotic and eukaryotic diversity of the human gut. Adv. Appl. Microbiol. 72, 43–62 (2010).
Xiang, H. et al. Microbial communities in the larval midgut of laboratory and field populations of cotton bollworm (Helicoverpa armigera). Can. J. Microbiol. 52, 1085–1092 (2006).
Kudo, R., Masuya, H., Endoh, R., Kikuchi, T. & Ikeda, H. Gut bacterial and fungal communities in ground-dwelling beetles are associated with host food habit and habitat. ISME J. 13, 676 (2019).
Broderick, N. A., Raffa, K. F., Goodman, R. M. & Handelsman, J. Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods. Appl. Environ. Microbiol. 70, 293–300 (2004).
Colman, D. R., Toolson, E. C. & Takacs-Vesbach, C. Do diet and taxonomy influence insect gut bacterial communities?. Mol. Ecol. 21, 5124–5137 (2012).
Quan, A. S. & Eisen, M. B. The ecology of the Drosophila-yeast mutualism in wineries. PLoS ONE 13, e0196440 (2018).
Starmer, W. T. & Lachance, M. A. Yeast ecology. Yeasts 7, 65–83 (2011).
Molnárová, J., Vadkertiová, R. & Stratilová, E. Extracellular enzymatic activities and physiological profiles of yeasts colonizing fruit trees. J. Basic Microbiol. 54, S74–S84 (2014).
White, I. M. & Elson-Harris, M. M. Fruit Flies of Economic Significance: Their Identification and Bionomics (CAB International, Wallingford, 1992).
Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3, 294–299 (1994).
Benson, D. A. et al. GenBank. Nucleic Acids Res. 46, D41–D47 (2018).
Australia, P. H. The Australian Handbook for the Identification of Fruit Flies. Vol. Version 1.0 (ed. Woods N) 234 (2011).
Gardes, M. & Bruns, T. D. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol. Ecol. 2, 113–118 (1993).
Hoggard, M. et al. Characterizing the human mycobiota: a comparison of small subunit rRNA, ITS1, ITS2, and large subunit rRNA genomic targets. Front. Microbiol. 9, 2208 (2018).
Fouts, D. E. et al. Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen. PLoS ONE 7, e48289 (2012).
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335 (2010).
Greenfield, P. Greenfield Hybrid Analysis Pipeline (GHAP) v1 (CSIRO, Canberra, 2017).
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460–2461 (2010).
Maidak, B. L. et al. The ribosomal database project (RDP). Nucleic Acids Res. 24, 82–85 (1996).
Deshpande, V. et al. Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences. Mycologia 108, 1–5 (2016).
Nilsson, R. H. et al. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 47, D259–D264 (2019).
Clarke, K. & Ainsworth, M. A method of linking multivariate community structure to environmental variables. Mar. Ecol. Prog. Ser. 92, 205–205 (1993).
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