Otte, D. & Endler, J. Speciation and its Consequences (Sinauer, 1989).
Coyne, J. A. & Orr, H. A. Speciation (Sinauer, 2004).
Gavrilets, S. Fitness Landscapes and the Origin of Species (MPB-41) Vol. 41 (Princeton Univ. Press, 2004).
Dieckmann, U., Doebeli, M., Metz, J. A. & Tautz, D. (eds) Adaptive Speciation (Cambridge Univ. Press, 2004).
Mayr, E. & Diamond, J. M. The Birds of Northern Melanesia: Speciation, Ecology & Biogeography (Oxford Univ. Press, 2001).
Nosil, P. Ecological Speciation (Oxford Univ. Press, 2012).
Seehausen, O. et al. Genomics and the origin of species. Nat. Rev. Genet. 15, 176–192 (2014).
Wolf, J. B. & Ellegren, H. Making sense of genomic islands of differentiation in light of speciation. Nat. Rev. Genet. 18, 87–100 (2017).
Flaxman, S. M., Wacholder, A. C., Feder, J. L. & Nosil, P. Theoretical models of the influence of genomic architecture on the dynamics of speciation. Mol. Ecol. 23, 4074–4088 (2014).
Schluter, D. The Ecology of Adaptive Radiation (Oxford Univ. Press, 2000).
Marques, D. A., Meier, J. I. & Seehausen, O. A combinatorial view on speciation and adaptive radiation. Trends Ecol. Evol. 34, 531–544 (2019).
Witte, F. & Van Oijen, M. J. P. Taxonomy, Ecology and Fishery of Lake Victoria Haplochromine Trophic Groups (Nationaal Natuurhistorisch Museum, 1990).
Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K. & Mooers, A. O. The global diversity of birds in space and time. Nature 491, 444–448 (2012).
Harvey, M. G. & Rabosky, D. L. Continuous traits and speciation rates: alternatives to state-dependent diversification models. Methods Ecol. Evol. 9, 984–993 (2018).
Rabosky, D. L. et al. An inverse latitudinal gradient in speciation rate for marine fishes. Nature 559, 392–395 (2018).
Carpenter, B. et al. Stan: a probabilistic programming language. J. Stat. Softw. 76, 1–32 (2017).
Rabosky, D. L. & Goldberg, E. E. FiSSE: a simple nonparametric test for the effects of a binary character on lineage diversification rates. Evolution 71, 1432–1442 (2017).
Jackson, P. B. N. The impact of predation, especially by the tiger-fish (Hydrocyon vittatus Cast.) on African freshwater fishes. Proc. Zool. Soc. Lond. 136, 603–622 (1961).
Wagner, C. E., Harmon, L. J. & Seehausen, O. Ecological opportunity and sexual selection together predict adaptive radiation. Nature 487, 366–369 (2012).
Beaulieu, J. M. & O’Meara, B. C. Detecting hidden diversification shifts in models of trait-dependent speciation and extinction. Syst. Biol. 65, 583–601 (2016).
Turner, I., Garimella, K. V., Iqbal, Z. & McVean, G. Integrating long-range connectivity information into de Bruijn graphs. Bioinformatics 34, 2556–2565 (2018).
Meier, J. I., et al. The coincidence of ecological opportunity with hybridization explains rapid adaptive radiation in Lake Mweru cichlid fishes. Nat. Commun. 10, 5391 (2019).
Trewavas, E. A Revision of the Genus Serranochromis Regan (Pisces, Cichlidae) (Musée royal de l’Afrique Centrale, 1964).
Meier, J. I. et al. Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nat. Commun. 8, 14363 (2017).
Palamara, P. F., Lencz, T., Darvasi, A. & Pe’er, I. Length distributions of identity by descent reveal fine-scale demographic history. Am. J. Hum. Genet. 91, 809–822 (2012).
Browning, S. R. & Browning, B. L. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81, 1084–1097 (2007).
Ralph, P. & Coop, G. The geography of recent genetic ancestry across Europe. PLoS Biol. 11, e1001555 (2013).
Meier, J. I. et al. Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Mol. Ecol. 26, 123–141 (2017).
Streelman, J. T. & Danley, P. D. The stages of vertebrate evolutionary radiation. Trends Ecol. Evol. 18, 126–131 (2003).
Gillespie, R. G. et al. Comparing adaptive radiations across space, time, and taxa. J. Hered. 111, 1–20 (2020).
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