Griffiths, H. J., Barnes, D. K. & Linse, K. Towards a generalized biogeography of the Southern Ocean benthos. J. Biogeogr. 36(1), 162–177 (2009).
Halanych, K. M. & Mahon, A. R. Challenging dogma concerning biogeographic patterns of Antarctica and the Southern Ocean. Annu. Rev. Ecol. Evol. Syst. 49, 355–378 (2018).
Broyer, C. & Koubbi, P. Chapter 1.1. Phylogeography and population genetics. In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d’Acoz C. d’, et al. (eds.) Biogeographic Atlas of the Southern Ocean (Scientific Committee on Antarctic Research, Cambridge, 2014) pp. 2–5.
Allcock, A. L. & Strugnell, J. M. Southern Ocean diversity: new paradigms from molecular ecology. Trends Ecol. Evol. 27(9), 520–528 (2012).
Holder, K., Montgomerie, R. & Friesen, V. L. A test of the glacial refugium hypothesis using patterns of mitochondrial and nuclear DNA sequence variation in rock ptarmigan (Lagopus mutus). Evolution 53(6), 1936–1950 (1999).
Stewart, J. R., Lister, A. M., Barnes, I. & Dalén, L. Refuges revisited: individualistic responses of species in space and time. Proc. R. Soc. Lond. B Biol. Sci. 277(1682), 661–671 (2010).
Hewitt, G. M. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J. Lin. Soc. 58(3), 247–276 (1996).
Hewitt, G. M. The structure of biodiversity–insights from molecular phylogeography. Front. Zool. 1(1), 4 (2004).
Fedorov, V. B. & Stenseth, N. C. Multiple glacial refugia in the North American Arctic: inference from phylogeography of the collared lemming (Dicrostonyx groenlandicus). Proc. R. Soc. Lond. B Biol. Sci. 269(1505), 2071–2077 (2002).
Dalén, L. et al. Ancient DNA reveals lack of postglacial habitat tracking in the arctic fox. Proc. Natl. Acad. Sci. 104(16), 6726–6729 (2007).
Thatje, S., Hillenbrand, C. D., Mackensen, A. & Larter, R. Life hung by a thread: endurance of Antarctic fauna in glacial periods. Ecology 89(3), 682–692 (2008).
Weihe, E. & Abele, D. Differences in the physiological response of inter-and subtidal Antarctic limpets Nacella concinna to aerial exposure. Aquat. Biol. 4(2), 155–166 (2008).
Abele, D. et al. Pelagic and benthic communities of the Antarctic ecosystem of Potter Cove: genomics and ecological implications. Mar. Genom. 33, 1–11 (2017).
Provan, J. & Bennett, K. D. Phylogeographic insights into cryptic glacial refuges. Trends Ecol. Evol. 23(10), 564–571 (2008).
Thatje, S., Hillenbrand, C. D. & Larter, R. On the origin of Antarctic marine benthic community structure. Trends Ecol. Evol. 20(10), 534–540 (2005).
Díaz, A. et al. Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation. PLoS ONE 13(6), e0197611 (2018).
González-Wevar, C. A., Saucède, T., Morley, S. A., Chown, S. L. & Poulin, E. Extinction and recolonization of maritime Antarctica in the limpet Nacella concinna (Strebel, 1908) during the last glacial cycle: toward a model of Quaternary biogeography in shallow Antarctic invertebrates. Mol. Ecol. 22(20), 5221–5236 (2013).
Fraser, C. I., Terauds, A., Smellie, J., Convey, P. & Chown, S. L. Geothermal activity helps life survive glacial cycles. Proc. Natl. Acad. Sci. 111(15), 5634–5639 (2014).
Maggs, C. A. et al. Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa. Ecology 89(sp11), S108–S122 (2008).
Lee, J. R. et al. Climate change drives expansion of Antarctic ice-free habitat. Nature 547(7661), 49 (2017).
Mcgaughran, A. et al. Contrasting phylogeographical patterns for springtails reflect different evolutionary histories between the Antarctic Peninsula and Continental Antarctica. J. Biogeogr. 37, 103–119 (2010).
Mcgaughran, A., Stevens, M. I., Hogg, I. D. & Carapelli, A. Extreme glacial legacies: a synthesis of the Antarctic springtail phylogeographic record. Insects 2, 62–82 (2011).
Fraser, C. I., Nikula, R., Ruzzante, D. E. & Waters, J. M. Poleward bound: biological impacts of Southern Hemisphere glaciation. Trends Ecol. Evol. 27(8), 462–471 (2012).
Moore, J. M., Carvajal, J. I., Rouse, G. W. & Wilson, N. G. The Antarctic circumpolar current isolates and connects: structured circumpolarity in the sea star Glabraster Antarctica. Ecol. Evol. 8(21), 10621–10633 (2018).
Beu, A. G. Before the ice: biogeography of Antarctic Paleogene molluscan faunas. Palaeogeogr. Palaeoclimatol. Palaeoecol. 284(3–4), 191–226 (2009).
Linse, K. Chapter 5.11. Bivalvia. In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d’Acoz C. d’, et al. (eds.) Biogeographic Atlas of the Southern Ocean (Scientific Committee on Antarctic Research, Cambridge, 2014), pp. 126–127.
Linse, K., Cope, T., Lörz, A. N. & Sands, C. Is the Scotia Sea a centre of Antarctic marine diversification? Some evidence of cryptic speciation in the circum-Antarctic bivalve Lissarca notorcadensis (Arcoidea: Philobryidae). Polar Biol. 30(8), 1059–1068 (2007).
Arntz, W. E., Gutt, J. & Klages, M. (1997). Antarctic marine biodiversity: an overview. In Antarctic Communities: Species, Structure and Survival 3–14 (Cambridge University Press, Cambridge, 1997).
Brandt, A., Linse, K. & Mühlenhardt-Siegel, U. Biogeography of Crustacea and Mollusca of the SubAntarctic and Antarctic regions. Sci. Mar. 63(S1), 383–389 (1999).
Brandt, A., Linse, K. & Schüller, M. Bathymetric distribution patterns of Southern Ocean macrofaunal taxa: Bivalvia, Gastropoda, Isopoda and Polychaeta. Deep Sea Res. Part I 56(11), 2013–2025 (2009).
Canapa, A. et al. A molecular analysis of the systematics of three Antarctic bivalves. Ital. J. Zool. 67(S1), 127–132 (2000).
Page, T. J. & Linse, K. More evidence of speciation and dispersal across the Antarctic Polar Front through molecular systematics of Southern Ocean Limatula (Bivalvia: Limidae). Polar Biol. 25(11), 818–826 (2002).
Passos, F. D. & Magalhães, F. T. A comparative study of the Bivalvia (Mollusca) from the continental shelves of Antarctica and Brazil. Biota. Neotrop. 11(1), 143–155 (2011).
Jackson, J. A., Linse, K., Whittle, R. & Griffiths, H. J. The evolutionary origins of the Southern Ocean philobryid bivalves: hidden biodiversity, ancient persistence. PLoS ONE 10(4), e0121198 (2015).
González-Wevar, C. A. et al. Cryptic speciation in Southern Ocean Aequiyoldia eightsii (Jay, 1839): Mio-Pliocene trans-Drake Passage separation and diversification. Prog. Oceanogr. 174, 44–54 (2019).
Powell, D. K., Tyler, P. A. & Peck, L. S. Effect of sperm concentration and sperm ageing on fertilisation success in the Antarctic soft-shelled clam Laternula elliptica and the Antarctic limpet Nacella concinna. Mar. Ecol. Prog. Ser. 215, 191–200 (2001).
Taylor, J. D. et al. Left in the cold? Evolutionary origin of Laternula elliptica, a keystone bivalve species of Antarctic benthos. Biol. J. Lin. Soc. 123(2), 360–376 (2018).
Lau, S. C., Grange, L. J., Peck, L. S. & Reed, A. J. The reproductive ecology of the Antarctic bivalve Aequiyoldia eightsii (Protobranchia: Sareptidae) follows neither Antarctic nor taxonomic patterns. Pol. Biol., 1–14 (2018).
Helmuth, B., Veit, R. R. & Holberton, R. Long-distance dispersal of a subAntarctic brooding bivalve (Gaimardia trapesina) by kelp-rafting. Mar. Biol. 120(3), 421–426 (1994).
Hunter, R. L. & Halanych, K. M. Evaluating connectivity in the brooding brittle star Astrotoma agassizii across the Drake Passage in the Southern Ocean. J. Hered. 99(2), 137–148 (2008).
Sherman, C. D. H., Hunt, A. & Ayre, D. J. Is life history a barrier to dispersal? Contrasting patterns of genetic differentiation along an oceanographically complex coast. Biol. J. Linn. Soc. 95, 106–116 (2008).
Thornhill, D. J., Mahon, A. R., Norenburg, J. L. & Halanych, K. M. Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea: Lineidae). Mol. Ecol. 17(23), 5104–5117 (2008).
Janosik, A. M., Mahon, A. R. & Halanych, K. M. Evolutionary history of Southern Ocean Odontaster sea star species (Odontasteridae; Asteroidea). Polar Biol. 34(4), 575–586 (2011).
Thatje, S. Effects of capability for dispersal on the evolution of diversity in Antarctic benthos. Integr. Comp. Biol. ics105 (2012).
Hüne, M. et al. Low level of genetic divergence between Harpagifer fish species (Perciformes: Notothenioidei) suggests a Quaternary colonization of Patagonia from the Antarctic Peninsula. Polar Biol. 38(5), 607–617 (2015).
Pelseneer, P. Mollusques (Amphineures, Gastropodes et Lamellibranches) Expédition Antartique Belge: Résultats Voyage du S. Y. Belgica en 1897–1898–1899 7 85, pp., pls. 1–9 (1903).
Shabica, S. V. Reproductive biology of the brooding Antarctic lamellibranch Kidderia Subquadrata Pelseneer 1974. MSc Thesis. School of Oceanography, Oregon.
Linse, K., Griffiths, H. J., Barnes, D. K. & Clarke, A. Biodiversity and biogeography of Antarctic and sub-Antarctic mollusca. Deep Sea Res. Part II 53(8), 985–1008 (2006).
Baird, H. P., Miller, K. J. & Stark, J. S. Genetic population structure in the Antarctic benthos: insights from the widespread amphipod Orchomenella franklini. PloS one 7(3), e34363 (2012).
Havermans, C. et al. Genetic and morphological divergences in the cosmopolitan deep-sea amphipod Eurythenes gryllus reveal a diverse abyss and a bipolar species. PLoS ONE 8(9), e74218 (2013).
Hoffman, J. I., Clarke, A., Linse, K. & Peck, L. S. Effects of brooding and broadcasting reproductive modes on the population genetic structure of two Antarctic gastropod molluscs. Mar. Biol. 158(2), 287–296 (2011).
González-Wevar, C. A., Nakano, T., Cañete, J. I. & Poulin, E. Molecular phylogeny and historical biogeography of Nacella (Patellogastropoda: Nacellidae) in the Southern Ocean. Mol. Phylogenet. Evol. 56(1), 115–124 (2010).
Moreau, C. et al. Is reproductive strategy a key factor in understanding the evolutionary history of Southern Ocean Asteroidea (Echinodermata)?. Ecol. Evol. 9(15), 8465–8478 (2019).
Thompson, A. F., Heywood, K. J., Thorpe, S. E., Renner, A. H. & Trasviña, A. Surface circulation at the tip of the Antarctic Peninsula from drifters. J. Phys. Oceanogr. 39(1), 3–26 (2009).
Du, G., Zhang, Z., Zhou, M., Zhu, Y. & Zhong, Y. The upper 1000-m slope currents North of the South Shetland Islands and Elephant Island based on ship cruise observations. J. Ocean Univ. China 17(2), 420–432 (2018).
Hofmann, E. E., Klinck, J. M., Lascara, C. M. & Smith, D. A. Water mass distribution and circulation west of the Antarctic Peninsula and including Bransfield Strait. Found. Ecol. Res. West Antarctic Peninsula 70, 61–80 (1996).
Leiva, C., Riesgo, A., Avila, C., Rouse, G. W. & Taboada, S. Population structure and phylogenetic relationships of a new shallow-water Antarctic phyllodocid annelid. Zoolog. Scr. 47(6), 714–726 (2018).
Savidge, D. K. & Amft, J. A. Circulation on the West Antarctic Peninsula derived from 6 years of shipboard ADCP transects. Deep Sea Res. Part I 56(10), 1633–1655 (2009).
Veit-Köhler, G. et al. Oceanographic and topographic conditions structure benthic meiofauna communities in the Weddell Sea, Bransfield Strait and Drake Passage (Antarctic). Prog. Oceanogr. 162, 240–256 (2018).
Barlett, E. M. R., Tosonotto, G. V., Piola, A. R., Sierra, M. E. & Mata, M. M. On the temporal variability of intermediate and deep waters in the Western Basin of the Bransfield Strait. Deep Sea Res. Part II 149, 31–46 (2018).
Riesgo, A., Taboada, S. & Avila, C. Evolutionary patterns in Antarctic marine invertebrates: an update on molecular studies. Mar. Genom. 23, 1–13 (2015).
Sugden, D. E. & Clapperton, C. M. The maximum ice extent on island groups in the Scotia Sea Antarctica. Quatern. Res. 7(2), 268–282 (1977).
Gersonde, R., Crosta, X., Abelmann, A. & Armand, L. Sea-surface temperature and sea ice distribution of the Southern Ocean at the EPILOG Last Glacial Maximum-a circum-Antarctic view based on siliceous microfossil records. Quatern. Sci. Rev. 24(7–9), 869–896 (2005).
Ingólfsson, Ó. & Hjort, C. Glacial history of the Antarctic Peninsula since the Last Glacial Maximum—a synthesis. Polar Res. 21(2), 227–234 (2002).
Simms, A. R., Milliken, K. T., Anderson, J. B. & Wellner, J. S. The marine record of deglaciation of the South Shetland Islands, Antarctica since the Last Glacial Maximum. Quatern. Sci. Rev. 30(13–14), 1583–1601 (2011).
Herron, M. J. & Anderson, J. B. Late quaternary glacial history of the South Orkney Plateau Antarctica. Quatern. Res. 33(3), 265–275 (1990).
Anderson, J. B., Shipp, S. S., Lowe, A. L., Wellner, J. S. & Mosola, A. B. The Antarctic ice sheet during the last glacial maximum and its subsequent retreat history: a review. Quatern. Sci. Rev. 21(1–3), 49–70 (2002).
Nikula, R., Fraser, C. I., Spencer, H. G. & Waters, J. M. Circumpolar dispersal by rafting in two subantarctic kelp-dwelling crustaceans. Mar. Ecol. Prog. Ser. 405, 221–230 (2010).
Fraser, C. I., Morrison, A. & Rojas, P. O. (2020). Biogeographic Processes Influencing Antarctic and sub-Antarctic Seaweeds. In Antarctic Seaweeds 43–57 (Springer, Cham, 2020).
Ávila, C. et al. Invasive marine species discovered on non-native kelp rafts in the warmest Antarctic island. Sci. Rep. 10(1), 1–9 (2020).
Takahata, N. & Slatkin, M. Private alleles in a partially isolated population II: distribution of persistence time and probability of emigration. Theor. Popul. Biol. 30(2), 180–193 (1986).
Stevens, M. I. & Hogg, I. D. Long-term isolation and recent range expansion from glacial refugia revealed for the endemic springtail Gomphiocephalus hodgsoni from Victoria Land Antarctica. Mol. Ecol. 12(9), 2357–2369 (2003).
Rogers, A. D. Evolution and biodiversity of Antarctic organisms: a molecular perspective. Philos. Trans. R. Soc. B Biol. Sci. 362(1488), 2191–2214 (2007).
Dahlgren, T. G., Weinberg, J. R. & Halanych, K. M. Phylogeography of the ocean quahog (Arctica islandica): influences of paleoclimate on genetic diversity and species range. Mar. Biol. 137(3), 487–495 (2000).
Thorson, G. Reproductive and larval ecology of marine bottom invertebrates. Biol. Rev. 25(1), 1–45 (1950).
Peck, L. S. & Bullough, L. W. Growth and population structure in the infaunal bivalve Yoldia eightsi in relation to iceberg activity at Signy Island Antarctica. Mar. Biol. 117(2), 235–241 (1993).
Waller, C. L., Barnes, D. K. & Convey, P. Ecological contrasts across an Antarctic land–sea interface. Austral Ecol. 31(5), 656–666 (2006).
Barnes, D. K. & Conlan, K. E. Disturbance, colonization and development of Antarctic benthic communities. Philos. Trans. R. Soc. Lond. B Biol. Sci. 362(1477), 11–38 (2007).
Hebert, P. D., Ratnasingham, S. & de Waard, J. R. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. Lond. B Biol. Sci. 270(Suppl 1), S96–S99 (2003).
Cook, L. G., Edwards, R. D., Crisp, M. D. & Hardy, N. B. Need morphology always be required for new species descriptions?. Invertebr. Syst. 24(3), 322–326 (2010).
Chown, S. L. et al. The changing form of Antarctic biodiversity. Nature 522(7557), 431–438 (2015).
Wilson, N. G., Schrodl, M. & Halanych, K. M. Ocean barriers and glaciation: evidence for explosive radiation of mitochondrial lineages in the Antarctic sea slug Doris kerguelenensis (Mollusca, Nudibranchia). Mol. Ecol. 18, 965–984 (2009).
Allcock, A. L. et al. Cryptic speciation and the circumpolarity debate: a case study on endemic Southern Ocean octopuses using the COI barcode of life. Deep Sea Res. II 58, 242–249 (2011).
Verheye, M. L., Backeljau, T. & d’Acoz, C. D. U. Looking beneath the tip of the iceberg: diversification of the genus Epimeria on the Antarctic shelf (Crustacea, Amphipoda). Polar Biol 39, 925–945 (2016).
Durand, J. D., Blel, H., Shen, K. N., Koutrakis, E. T. & Guinand, B. Population genetic structure of Mugil cephalus in the Mediterranean and Black Seas: a single mitochondrial clade and many nuclear barriers. Mar. Ecol. Prog. Ser. 474, 243–261 (2013).
Bonnet, T., Leblois, R., Rousset, F. & Crochet, P. A. A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes. Evolution 71(9), 2140–2158 (2017).
Kearse, M. et al. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12), 1647–1649 (2012).
Librado, P. & Rozas, J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11), 1451–1452 (2009).
Excoffier, L. & Lischer, H. E. Arlequin suite ver 35: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10(3), 564–567 (2010).
Rousset, F. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145, 1219–1228 (1997).
Mantel, N. The detection of disease clustering and a generalized regression approach. Can. Res. 27, 209–220 (1967).
Ihaka, R. & Gentleman, R. R: a language for data analysis and graphics. J. Comput. Graph Stat. 5, 299–314 (1996).
Dupanloup, I., Schneider, S. & Excoffier, L. A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11(12), 2571–2581 (2002).
Guillot, G., Mortier, F. & Estoup, A. GENELAND: a computer package for landscape genetics. Mol. Ecol. Notes 5(3), 712–715 (2005).
Salzburger, W., Ewing, G. B. & Von Haeseler, A. The performance of phylogenetic algorithms in estimating haplotype genealogies with migration. Mol. Ecol. 20(9), 1952–1963 (2011).
Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123(3), 585–595 (1989).
Fu, Y. X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147(2), 915–925 (1997).
Bouckaert, R. et al. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 10(4), e1003537 (2014).
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 9(8), 772 (2012).
Marko, P. B. & Moran, A. L. Out of sight, out of mind: high cryptic diversity obscures the identities and histories of geminate species in the marine bivalve subgenus Acar. J. Biogeogr. 36(10), 1861–1880 (2009).
Wilke, T., Schultheiß, R. & Albrecht, C. As time goes by: a simple fool’s guide to molecular clock approaches in invertebrates. Am. Malacol. Bull. 27(1/2), 25–45 (2009).
Ho, S. Y., Phillips, M. J., Cooper, A. & Drummond, A. J. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 22(7), 1561–1568 (2005).
Hoareau, T. B. Late glacial demographic expansion motivates a clock overhaul for population genetics. Syst. Biol. 65(3), 449–464 (2015).
Rambaut, A., Suchard, M. A., Xie, D. & Drummond, A. J. Tracer v1 6, 2014 (2016).
Cornuet, J. M. et al. DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data. Bioinformatics 30, 1187–1189 (2014).
Cabrera, A. A. & Palsbøll, P. J. Inferring past demographi changes from contemporary genetic data: a simulation-based evaluation of the ABC methods implemented in DIYABC. Mol. Ecol. Resour. 17(6), e94–e110 (2017).
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