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Predicting 3D protein structures in light of evolution

  • 1.

    Bershtein, S., Serohijos, A. W. & Shakhnovich, E. I. Curr. Opin. Struct. Biol. 42, 31–40 (2017).

    CAS 
    Article 

    Google Scholar 

  • 2.

    Elena, S. F. & Lenski, R. E. Nat. Rev. Genet. 4, 457–469 (2003).

    CAS 
    Article 

    Google Scholar 

  • 3.

    Fowler, D. M. & Fields, S. Nat. Methods 11, 801–807 (2014).

    CAS 
    Article 

    Google Scholar 

  • 4.

    Jasinska, W. et al. Nat. Ecol. Evol. 4, 437–452 (2020).

    Article 

    Google Scholar 

  • 5.

    Jumper, J. et al. Highly accurate protein structure prediction with AlphaFold. Nature https://doi.org/10.1038/s41586-021-03819-2 (2021).

  • 6.

    Diss, G. & Lehner, B. eLife 7, e32472 (2018).

    Article 

    Google Scholar 

  • 7.

    Schmiedel, J. M. & Lehner, B. Nat. Genet. 51, 1177–1186 (2019).

    CAS 
    Article 

    Google Scholar 

  • 8.

    Guan, Y., Dunham, M. J. & Troyanskaya, O. G. Genetics 175, 933–943 (2007).

    CAS 
    Article 

    Google Scholar 

  • 9.

    Soria, P. S., McGary, K. L. & Rokas, A. Mol. Biol. Evol. 31, 984–992 (2014).

    CAS 
    Article 

    Google Scholar 

  • 10.

    Gabaldon, T. & Koonin, E. V. Nat. Rev. Genet. 14, 360–366 (2013).

    CAS 
    Article 

    Google Scholar 

  • 11.

    Montelione, G. T. F1000 Biol. Rep. 4, 7 (2012).

    Article 

    Google Scholar 

  • 12.

    Laskowski, R. A., Watson, J. D. & Thornton, J. M. J. Mol. Biol. 351, 614–626 (2005).

    CAS 
    Article 

    Google Scholar 

  • 13.

    Lee, D., Redfern, O. & Orengo, C. Nat. Rev. Mol. Cell Biol. 8, 995–1005 (2007).

    CAS 
    Article 

    Google Scholar 

  • 14.

    Redfern, O. C., Dessailly, B. H., Dallman, T. J., Sillitoe, I. & Orengo, C. A. PLoS Comput. Biol. 5, e1000485 (2009).

    Article 

    Google Scholar 

  • 15.

    Harms, M. J. & Thornton, J. W. Curr. Opin. Struct. Biol. 20, 360–366 (2010).

    CAS 
    Article 

    Google Scholar 

  • 16.

    Levin, L. & Mishmar, D. Nat. Ecol. Evol. 1, 41 (2017).

    Article 

    Google Scholar 

  • 17.

    Aadland, K. & Kolaczkowski, B. Biol. Evol. 12, 1549–1565 (2020).

    CAS 

    Google Scholar 

  • 18.

    Kleiner, D. et al. J. Mol. Biol. 431, 4796–4816 (2019).

    CAS 
    Article 

    Google Scholar 

  • 19.

    Boehr, D. D., Nussinov, R. & Wright, P. E. Nat. Chem. Biol. 5, 789–796 (2009).

    CAS 
    Article 

    Google Scholar 

  • 20.

    Bershtein, S. et al. PLoS Genet. 11, e1005612 (2015).

    Article 

    Google Scholar 

  • 21.

    Senior, A. W. et al. Nature 577, 706–710 (2020).

    CAS 
    Article 

    Google Scholar 

  • 22.

    Gershoni, M. et al. J. Mol. Biol. 404, 158–171 (2010).

    CAS 
    Article 

    Google Scholar 

  • 23.

    Sutto, L., Marsili, S., Valencia, A. & Gervasio, F. L. Proc. Natl Acad. Sci. USA 112, 13567–13572 (2015).

    CAS 
    Article 

    Google Scholar 


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