Lewontin, R. C. The triple helix: Gene, organism, and environment (Harvard University Press, 2001).
Legrand, D. et al. Eco-evolutionary dynamics in fragmented landscapes. Ecography 40, 9–25 (2017).
Odling-Smee, F. J., Laland, K. N. & Feldman, M. W. Niche construction: the neglected process in evolution. 37 (Princeton university press, 2003).
Jones, C. G., Lawton, J. H. & Shachak, M. Organisms as ecosystem engineers. In Ecosystem management, 130–147 (Springer, 1994).
Whittaker, R. H., Levin, S. A. & Root, R. B. Niche, habitat, and ecotope. The Am. Nat. 107, 321–338 (1973).
Byers, J. E. et al. Using ecosystem engineers to restore ecological systems. Trends ecology & evolution 21, 493–500 (2006).
Peterson, G., Allen, C. R. & Holling, C. S. Ecological resilience, biodiversity, and scale. Ecosystems 1, 6–18 (1998).
de Visser, S., Thébault, E. & de Ruiter, P. C. Ecosystem engineers, keystone species. In Ecological Systems, 59–68 (Springer, 2013).
Moore, J. C. et al. Detritus, trophic dynamics and biodiversity. Ecol. letters 7, 584–600 (2004).
Post, D. M. & Palkovacs, E. P. Eco-evolutionary feedbacks in community and ecosystem ecology: interactions between the ecological theatre and the evolutionary play. Philos. Transactions Royal Soc. B: Biol. Sci. 364, 1629–1640 (2009).
Shou, W., Ram, S. & Vilar, J. M. Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. 104, 1877–1882 (2007).
Summers, Z. M. et al. Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria. Science 330, 1413–1415 (2010).
Kato, S., Haruta, S., Cui, Z. J., Ishii, M. & Igarashi, Y. Stable coexistence of five bacterial strains as a cellulose-degrading community. Appl. Environ. Microbiol. 71, 7099–7106 (2005).
McInerney, M. J., Sieber, J. R. & Gunsalus, R. P. Syntrophy in anaerobic global carbon cycles. Curr. opinion biotechnology 20, 623–632 (2009).
Cronin, J. T. & Reeve, J. D. Host–parasitoid spatial ecology: a plea for a landscape-level synthesis. Proc. Royal Soc. Lond. B: Biol. Sci. 272, 2225–2235 (2005).
Krakauer, D. C., Page, K. M. & Erwin, D. H. Diversity, dilemmas, and monopolies of niche construction. The Am. Nat. 173, 26–40 (2008).
Odling-Smee, F. J., Laland, K. N. & Feldman, M. W. Niche construction. The Am. Nat. 147, 641–648 (1996).
Laland, K. N., Odling-Smee, F. J. & Feldman, M. W. Evolutionary consequences of niche construction and their implications for ecology. Proc. Natl. Acad. Sci. 96, 10242–10247 (1999).
Weismann, A. Das Keimplasma: eine theorie der Vererbung (Fischer, 1892).
Buss, L. W. The evolution of individuality (Princeton University Press, 2014).
Robinson, G. E. Regulation of division of labor in insect societies. Annu. review entomology 37, 637–665 (1992).
Craig Maclean, R. & Brandon, C. Stable public goods cooperation and dynamic social interactions in yeast. J. evolutionary biology 21, 1836–1843 (2008).
Neilands, J. Siderophores: structure and function of microbial iron transport compounds. J. Biol. Chem. 270, 26723–26726 (1995).
McAvoy, A., Fraiman, N., Hauert, C., Wakeley, J. & Nowak, M. A. Public goods games in populations with fluctuating size. arXiv preprint arXiv:1709.03630 (2017).
Gore, J., Youk, H. & Van Oudenaarden, A. Snowdrift game dynamics and facultative cheating in yeast. Nature 459, 253–256 (2009).
Griffin, A. S., West, S. A. & Buckling, A. Cooperation and competition in pathogenic bacteria. Nature 430, 1024–1027 (2004).
Hardin, G. The tragedy of the commons. J. Nat. Resour. Policy Res. 1, 243–253 (2009).
Levin, S. A. & Paine, R. T. Disturbance, patch formation, and community structure. Proc. Natl. Acad. Sci. 71, 2744–2747 (1974).
Bruno, J. F., Stachowicz, J. J. & Bertness, M. D. Inclusion of facilitation into ecological theory. Trends Ecol. & Evol. 18, 119–125 (2003).
Xu, C., Van Nes, E. H., Holmgren, M., Kéfi, S. & Scheffer, M. Local facilitation may cause tipping points on a landscape level preceded by early-warning indicators. The Am. Nat. 186, E81–E90 (2015).
Gyllenberg, M. & Parvinen, K. Necessary and sufficient conditions for evolutionary suicide. Bull. mathematical biology 63, 981–993 (2001).
Parvinen, K. Evolutionary suicide. Acta biotheoretica 53, 241–264 (2005).
Levins, R. Some demographic and genetic consequences of environmental heterogeneity for biological control. Am. Entomol. 15, 237–240 (1969).
Allen, B., Gore, J. & Nowak, M. A. Spatial dilemmas of diffusible public goods. Elife 2, e01169 (2013).
Harris, T. E. Contact interactions on a lattice. The Annals Probab. 969–988 (1974).
Liggett, T. M. Interacting particle systems, vol. 276 (Springer Science & Business Media, 2012).
Marro, J. & Dickman, R. Nonequilibrium phase transitions in lattice models (Cambridge University Press, 2005).
Anderson, R. M. & May, R. M. Population biology of infectious diseases: Part i. Nature 280, 361 (1979).
Keymer, J. E., Marquet, P. A., Velasco-Hernández, J. X. & Levin, S. A. Extinction thresholds and metapopulation persistence in dynamic landscapes. The Am. Nat. 156, 478–494 (2000).
Bascompte, J. & Solé, R. V. Habitat fragmentation and extinction thresholds in spatially explicit models. J. Animal Ecol. 465–473 (1996).
Rietkerk, M., Dekker, S. C., De Ruiter, P. C. & van de Koppel, J. Self-organized patchiness and catastrophic shifts in ecosystems. Science 305, 1926–1929 (2004).
Fisher, M. E. & Barber, M. N. Scaling theory for finite-size effects in the critical region. Phys. Rev. Lett. 28, 1516 (1972).
Forman, R. Land Mosaics: The Ecology of Landscapes and Regions 1995 (Springer, 2014).
Whittaker, R. & Levin, S. The role of mosaic phenomena in natural communities. Theor. population biology 12, 117–139 (1977).
Levin, S. A. Community equilibria and stability, and an extension of the competitive exclusion principle. The Am. Nat. 104, 413–423 (1970).
Neuhauser, C. Ergodic theorems for the multitype contact process. Probab. Theory Relat. Fields 91, 467–506 (1992).
Horn, H. S. & MacArthur, R. H. Competition among fugitive species in a harlequin environment. Ecology 53, 749–752 (1972).
Connell, J. H. Diversity in tropical rain forests and coral reefs. Science 199, 1302–1310 (1978).
von Bronk, B., Schaffer, S. A., Götz, A. & Opitz, M. Effects of stochasticity and division of labor in toxin production on two-strain bacterial competition in escherichia coli. PLoS biology 15, e2001457 (2017).
Wetherington, M. T. & Keymer, J. E. What does not kill you makes you stronger. Trends microbiology 25, 605–607 (2017).
Momeni, B., Waite, A. J. & Shou, W. Spatial self-organization favors heterotypic cooperation over cheating. Elife 2, e00960 (2013).
Köhler, T., Buckling, A. & Van Delden, C. Cooperation and virulence of clinical pseudomonas aeruginosa populations. Proc. Natl. Acad. Sci. 106, 6339–6344 (2009).
Diggle, S. P., Griffin, A. S., Campbell, G. S. & West, S. A. Cooperation and conflict in quorum-sensing bacterial populations. Nature 450, 411–414 (2007).
Jin, Z. et al. Conditional privatization of a public siderophore enables pseudomonas aeruginosa to resist cheater invasion. Nat. communications 9, 1–11 (2018).
Hallatschek, O., Hersen, P., Ramanathan, S. & Nelson, D. R. Genetic drift at expanding frontiers promotes gene segregation. Proc. Natl. Acad. Sci. 104, 19926–19930 (2007).
Durrett, R. & Levin, S. The importance of being discrete (and spatial). Theor. population biology 46, 363–394 (1994).
Doebeli, M. & Hauert, C. Models of cooperation based on the prisoner’s dilemma and the snowdrift game. Ecol. letters 8, 748–766 (2005).
Lion, S. & Van Baalen, M. Self-structuring in spatial evolutionary ecology. Ecol. letters 11, 277–295 (2008).
Estrela, S. et al. Environmentally mediated social dilemmas. Trends ecology & evolution (2018).
Hauert, C., Saade, C. & McAvoy, A. Asymmetric evolutionary games with environmental feedback. J. theoretical biology 462, 347–360 (2019).
Smith, J. M. & Szathmary, E. The major transitions in evolution (Oxford University Press, 1997).
Varela, F. G., Maturana, H. R. & Uribe, R. Autopoiesis: the organization of living systems, its characterization and a model. Biosystems 5, 187–196 (1974).
Durrett, R. & Levin, S. Spatial aspects of interspecific competition. Theor. population biology 53, 30–43 (1998).
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