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Streptomyces acidicola sp. nov., isolated from a peat swamp forest in Thailand

  • 1.

    Waksman SA, Henrici AT. The nomenclature and classification of the actinomycetes. J Bacteriol. 1943;46:337.

  • 2.

    Kämpfer P. Genus Streptomyces Waksman and Henrici 1943, 339AL. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo M, Suzuki K, et al., editors. Bergey’s manual® of systematic bacteriology. New York: Springer; 2012. p. 1679–80.

  • 3.

    Hayakawa M, Nonomura H. Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol. 1987;65:501–9.

  • 4.

    Shirling ET, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol. 1966;16:313–40.

    • Article
    • Google Scholar
  • 5.

    Jacobson E, Grauville WC, Fogs CE. Color harmony manual. 4th ed. Chicago: Container Corporation of America; 1958.

  • 6.

    Gordon RE, Barnett DA, Handerhan JE, Pang CH-N. Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol. 1974;24:54–63.

    • Article
    • Google Scholar
  • 7.

    Williams S, Goodfellow M, Alderson G, Wellington E, Sneath P, et al. Numerical classification of Streptomyces and related genera. Microbiology. 1983;129:1743–813.

  • 8.

    Küster E, Williams S. Selection of media for isolation of streptomycetes. Nature. 1964;202:928–9.

    • Article
    • Google Scholar
  • 9.

    Becker B, Lechevalier M, Lechevalier H. Chemical composition of cell-wall preparations from strains of various form-genera of aerobic actinomycetes. Appl Microbiol. 1965;13:236–43.

  • 10.

    Hasegawa T, Takizawa M, Tanida S. A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol. 1983;29:319–22.

  • 11.

    Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol. 1974;28:226–31.

  • 12.

    Tomiyasu I. Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol. 1982;151:828–37.

  • 13.

    Minnikin D, Patel P, Alshamaony L, Goodfellow M. Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Evol Microbiol. 1977;27:104–17.

    • CAS
    • Google Scholar
  • 14.

    Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. Newark, Delaware, United States: MIDI, Inc; 2001. p. 1–7.

    • Google Scholar
  • 15.

    Kieser T, Bibb M, Buttner M, Chater K, Hopwood D. Practical Streptomyces genetics. Norwich, UK: John Innes Foundation; 2000.

    • Google Scholar
  • 16.

    Mingma R, Pathom-aree W, Trakulnaleamsai S, Thamchaipenet A, Duangmal K. Isolation of rhizospheric and roots endophytic actinomycetes from Leguminosae plant and their activities to inhibit soybean pathogen, Xanthomonas campestris pv. glycine. World J Microbiol Biotechnol. 2014;30:271–80.

  • 17.

    Boratyn GM, Camacho C, Cooper PS, Coulouris G, Fong A, et al. BLAST: a more efficient report with usability improvements. Nucleic Acids Res. 2013;41:W29–33.

    • Article
    • Google Scholar
  • 18.

    Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y, et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol. 2017;67:1613–7.

  • 19.

    Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol. 1971;20:406–16.

    • Article
    • Google Scholar
  • 20.

    Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981;17:368–76.

  • 21.

    Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–25.

  • 22.

    Kumar S, Stecher G, Tamura K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–4.

  • 23.

    Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783–91.

    • Article
    • Google Scholar
  • 24.

    Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics. 2013;29:1072–5.

  • 25.

    Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, et al. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 2016;44:6614–24.

  • 26.

    Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinforma. 2013;14:60.

    • Article
    • Google Scholar
  • 27.

    Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J. JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics. 2016;32:929–31.

  • 28.

    Blin K, Shaw S, Steinke K, Villebro R, Ziemert N, et al. antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids Res. 2019;47:W81–7.

    • Article
    • Google Scholar
  • 29.

    Lechevalier MP, De Bievre C, Lechevalier H. Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol. 1977;5:249–60.

  • 30.

    Kim SB, Lonsdale J, Seong C-N, Goodfellow M. Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici (1943) AL) emend. Rainey et al. 1997. Antonie van Leeuwenhoek. 2003;83:107–16.

  • 31.

    Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol. 2018;68:461–6.

  • 32.

    Klykleung N, Phongsopitanun W, Pittayakhajonwut P, Ohkuma M, Kudo T, et al. Streptomyces phyllanthi sp. nov., isolated from the stem of Phyllanthus amarus. Int J Syst Evol Microbiol. 2016;66:3923–8.

  • 33.

    Khan ST, Komaki H, Motohashi K, Kozone I, Mukai A, et al. Streptomyces associated with a marine sponge Haliclona sp.; Biosynthetic genes for secondary metabolites and products. Evol Microbiol. 2011;13:391–403.

    • CAS
    • Google Scholar
  • 34.

    Lee H-J, Whang K-S. Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil. Int J Syst Bacteriol. 2016;66:3573–8.


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