Paterson, S. et al. Antagonistic coevolution accelerates molecular evolution. Nature 464, 275–278 (2010).
Schulte, R. D., Makus, C., Hasert, B., Michiels, N. K. & Schulenburg, H. Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite. Proc. Natl Acad. Sci. USA 107, 7359–7364 (2010).
Koskella, B. & Lively, C. M. Evidence for negative frequency-dependent selection during experimental coevolution of a freshwater snail and a sterilizing trematode. Evolution 63, 2213–2221 (2009).
Decaestecker, E. et al. Host–parasite ‘Red Queen’ dynamics archived in pond sediment. Nature 450, 870–873 (2007).
Gómez, P. & Buckling, A. Bacteria–phage antagonistic coevolution in soil. Science 332, 106–109 (2011).
Refardt, D. & Ebert, D. Inference of parasite local adaptation using two different fitness components. J. Evol. Biol. 20, 921–929 (2007).
Duffy, M. A., Hall, S. R., Cáceres, C. E. & Ives, A. R. Rapid evolution, seasonality, and the termination of parasite epidemics. Ecology 90, 1441–1448 (2009).
Springer, Y. P. Clinical resistance structure and pathogen local adaptation in a serpentine flax–flax rust interaction. Evolution 61, 1812–1822 (2007).
Tack, A. J. M., Laine, A.-L., Burdon, J. J., Bissett, A. & Thrall, P. H. Below-ground abiotic and biotic heterogeneity shapes above-ground infection outcomes and spatial divergence in a host–parasite interaction. New Phytol. 207, 1159–1169 (2015).
Wolinska, J. & King, K. C. Environment can alter selection in host–parasite interactions. Trends Parasitol. 25, 236–244 (2009).
Auld, S. K. J. R., Hall, S. R., Ochs, J. H., Sebastian, M. & Duffy, M. A. Predators and patterns of within-host growth can mediate both among-host competition and evolution of transmission potential of parasites. Am. Nat. 184, S77–S90 (2014).
Wright, R. C. T., Brockhurst, M. A. & Harrison, E. Ecological conditions determine extinction risk in co-evolving bacteria–phage populations. BMC Evol. Biol. 16, 227 (2016).
Duffy, M. A. et al. Ecological context influences epidemic size and parasite-driven evolution. Science 335, 1636–1638 (2012).
Auld, S. K. J. R. & Brand, J. Environmental variation causes different (co) evolutionary routes to the same adaptive destination across parasite populations. Evol. Lett. 1, 245–254 (2017).
Su, M. & Boots, M. The impact of resource quality on the evolution of virulence in spatially heterogeneous environments. J. Theor. Biol. 416, 1–7 (2017).
Auld, S. K. J. R. & Tinsley, M. C. The evolutionary ecology of complex lifecycle parasites: linking phenomena with mechanisms. Heredity 114, 125–132 (2015).
Cardon, M., Loot, G., Grenouillet, G. & Blanchet, S. Host characteristics and environmental factors differentially drive the burden and pathogenicity of an ectoparasite: a multilevel causal analysis. J. Anim. Ecol. 80, 657–667 (2011).
Mahmud, M. A., Bradley, J. E. & MacColl, A. D. C. Abiotic environmental variation drives virulence evolution in a fish host–parasite geographic mosaic. Funct. Ecol. 31, 2138–2146 (2017).
Arruda, J. A., Marzolf, G. R. & Faulk, R. T. The role of suspended sediments in the nutrition of zooplankton in turbid reservoirs. Ecology 64, 1225–1235 (1983).
Mostowy, R. & Engelstädter, J. The impact of environmental change on host–parasite coevolutionary dynamics. Proc. R. Soc. B 278, 2283–2292 (2011).
Thompson, J. N. The Geographic Mosaic of Coevolution (Univ. Chicago Press, 2005).
Brett, M. T. Chaoborus and fish-mediated influences on Daphnia longispina population structure, dynamics and life history strategies. Oecologia 89, 69–77 (1992).
Goss, L. B. & Bunting, D. L. Daphnia development and reproduction: responses to temperature. J. Therm. Biol. 8, 375–380 (1983).
Luijckx, P., Fienberg, H., Duneau, D. & Ebert, D. A matching-allele model explains host resistance to parasites. Curr. Biol. 23, 1085–1088 (2013).
Bento, G. et al. The genetic basis of resistance and matching-allele interactions of a host–parasite system: the Daphnia magna–Pasteuria ramosa model. PLoS Genet. 13, e1006596 (2017).
Grosberg, R. K. Mate selection and the evolution of highly polymorphic self/nonself recognition genes. Science 289, 2111–2114 (2000).
Hutchinson, G. E. The Ecological Theater and the Evolutionary Play (Yale Univ. Press, 1965).
Stuart, Y. E. et al. Contrasting effects of environment and genetics generate a continuum of parallel evolution. Nat. Ecol. Evol. 1, 0158 (2017).
Klüttgen, B., Dülmer, U., Engels, M. & Ratte, H. ADaM, an artificial freshwater for the culture of zooplankton. Water Res. 28, 743–746 (1994).
Ebert, D., Zschokke-Rohringer, C. D. & Carius, H. J. Within- and between-population variation for resistance of Daphnia magna to the bacterial endoparasite Pasteuria ramosa. Proc. R. Soc. B 265, 2127–2134 (1998).
Auld, S. K. J. R. & Brand, J. Simulated climate change, epidemic size, and host evolution across host–parasite populations. Glob. Change Biol. 23, 5045–5053 (2017).
Holm, S. A simple sequentially rejective multiple test procedure. Scand. J. Stat. 6, 65–70 (1979).
R Core Team R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, 2019).
Brereton, R. G. & Lloyd, G. R. Re-evaluating the role of the Mahalanobis distance measure. J. Chemom. 30, 134–143 (2016).
D’Orazio, M. StatMatch: Statistical Matching or Data Fusion. R package version 1.4.0 (2019).
Goslee, S. C. & Urban, D. L. The ecodist package for dissimilarity-based analysis of ecological data. J. Stat. Softw. 22, 1–22 (2007).
Lefcheck, J. S. piecewiseSEM: piecewise structural equation modelling in R for ecology, evolution and systematics. Methods Ecol. Evol. 7, 573–579 (2016).
Auld, S. K. J. R., Wilson, P. J. & Little, T. J. Rapid change in parasite infection traits over the course of an epidemic in a wild host–parasite population. Oikos 123, 232–238 (2014).
Shocket, M. S. et al. Parasite rearing and infection temperatures jointly influence disease transmission and shape seasonality of epidemics. Ecology 99, 1975–1987 (2018).
Duncan, A. B., Mitchell, S. E. & Little, T. J. Parasite-mediated selection and the role of sex and diapause in Daphnia. J. Evol. Biol. 19, 1183–1189 (2006).
Auld, S. K. J. R. et al. Variation in costs of parasite resistance among natural host populations. J. Evol. Biol. 26, 2479–2486 (2013).
Laine, A.-L. Evolution of host resistance: looking for coevolutionary hotspots at small spatial scales. Proc. R. Soc. B 273, 267–273 (2006).
Lohse, K., Gutierrez, A. & Kaltz, O. Experimental evolution of resistance in Paramecium caudatum against the bacterial parasite Holospora undulata. Evolution 60, 1177–1186 (2006).
Duffy, M. A. & Sivars-Becker, L. Rapid evolution and ecological host–parasite dynamics. Ecol. Lett. 10, 44–53 (2007).
Brewer, M. J., Butler, A. & Cooksley, S. L. The relative performance of AIC, AICC and BIC in the presence of unobserved heterogeneity. Methods Ecol. Evol. 7, 679–692 (2016).
Shipley, B. A new inferential test for path models based on directed acyclic graphs. Struct. Equ. Model. 7, 206–218 (2000).
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