Stuart, Y. E., Losos, J. B. & Algar, A. C. The island-mainland species turnover relationship. Proc. R. Soc. B Biol. Sci. 279, 4071–4077 (2012).
Google Scholar
Grant, P. R. Evolution on Islands (Oxford University Press, 1998).
Garant, D., Forde, S. E. & Hendry, A. P. The multifarious effects of dispersal and gene flow on contemporary adaptation. Funct. Ecol. 21, 434–443 (2007).
Google Scholar
Armstrong, C. et al. Genomic associations with bill length and disease reveal drift and selection across island bird populations. Evol. Lett. 2(1), 22–36 (2018).
Google Scholar
Eldridge, M. D. B. et al. Unprecedented low levels of genetic variation and inbreeding depression in an island population of the black-footed rock-wallaby. Conserv. Biol. 13, 531–541 (1999).
Google Scholar
Wright, S. Isolation by distance under diverse systems of mating. Genetics 31, 39–59 (1946).
Google Scholar
Kimura, M. & Crow, J. F. The number of alleles that can be maintained in a finite population. Genetics 49(4), 725 (1964).
Google Scholar
Luikart, G., England, P. R., Tallmon, D., Jordan, S. & Taberlet, P. The power and promise of population genomics: From genotyping to genome typing. Nat. Rev. Genet. 4(12), 981–994 (2003).
Google Scholar
Nei, M., Suzuki, Y. & Nozawa, M. The neutral theory of molecular evolution in the genomic era. Annu. Rev. Genom. Hum. Genet. 11, 265–289 (2010).
Google Scholar
Weigelt, P., Jetz, W. & Kreft, H. Bioclimatic and physical characterization of the world’s islands. Proc. Natl. Acad. Sci. U.S.A. 110(38), 15307–15312 (2013).
Google Scholar
Huey, R. B., Gilchrist, G. W., Carlson, M. L., Berrigan, D. & Serra, L. Rapid evolution of a geographic cline in size in an introduced fly. Science 287(5451), 308–309 (2000).
Google Scholar
Prates, I., Angilleta, M. J., Wilson, R. S., Niehaus, A. C. & Navas, C. A. Dehydration hardly slows hopping toads (Rhinella granulosa) from xeric and mesic environments. Physiol. Biochem. Zool. 86(4), 451–457 (2013).
Google Scholar
Prates, I., Penna, A., Trefaut, M. & Carnaval, A. C. Local adaptation in mainland anole lizards: Integrating population history and genome-environment associations. Ecol. Evol. 8, 11932–11944 (2018).
Google Scholar
Funk, W. C. et al. Adaptive divergence despite strong genetic drift: Genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyonlittoralis). Mol. Ecol. 25(10), 2176–2194 (2016).
Google Scholar
Friis, G. et al. Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird. Mol. Ecol. 27(24), 5137–5153 (2018).
Google Scholar
Bover, P., Quintana, J. & Alcover, J. A. Three islands, three worlds: Paleogeography and evolution of the vertebrate fauna from the Balearic Islands. Quatern. Int. 182, 135–144 (2008).
Google Scholar
Pérez-Mellado, V. Les sargantanes de les Balears (Edicions Quaderns de Natura de les Balears, Documenta Balear, 2009).
Pérez-Mellado, V. et al. Population density in Podarcis lilfordi (Squamata, Lacertidae), a lizard species endemic to small islets in the Balearic Islands (Spain). Amphibia-Reptilia 29(1), 49–60 (2008).
Google Scholar
Brown, R. P. et al. Bayesian estimation of post-Messinian divergence times in Balearic Island lizards. Mol. Phylogenet. Evol. 48(1), 350–358 (2008).
Google Scholar
Terrasa, B. et al. Foundations for conservation of intraspecific genetic diversity revealed by analysis of phylogeographical structure in the endangered endemic lizard Podarcis lilfordi. Divers. Distrib. 15(2), 207–221 (2009).
Google Scholar
Terrasa, B. et al. Use of NCPA to understanding genetic sub-structuring of Podarcis lilfordi from the Balearic archipelago. Amphibia-Reptilia 30(4), 505–514 (2009).
Google Scholar
Emig, C. C. & Geistdoerfer, P. The Mediterranean deep-sea fauna: Historical evolution, bathymetric variations and geographical changes. Carnets Geol. https://doi.org/10.4267/2042/3230 (2004).
Google Scholar
Pérez-Cembranos, A. et al. Morphological and genetic diversity of the Balearic lizard, Podarcis lilfordi (Günther, 1874): Is it relevant to its conservation?. Divers. Distrib. 26, 1122–1141 (2020).
Google Scholar
Palumbi, S. R. The Evolution Explosion: How Humans Cause Rapid Evolutionary Change (W. W. Norton & Company, 2002).
Ashley, M. V. et al. Evolutionary enlightened management. Biol. Conserv. 111, 115–123 (2003).
Google Scholar
Stockwell, C. A., Hendry, A. P. & Kinnison, M. T. Contemporary evolution meets conservation biology. Trends Ecol. Evol. 18, 94–101 (2003).
Google Scholar
Baird, N. A. et al. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE 3(10), e3376 (2008).
Google Scholar
Peterson, B. K., Weber, J. N., Kay, E. H., Fisher, H. S. & Hoekstra, H. E. Double digest RADseq: An inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS ONE 7(5), e37135 (2012).
Google Scholar
Andrews, K. R., Good, J. M., Miller, M. R., Luikart, G. & Hohenlohe, P. A. Harnessing the power of RADseq for ecological and evolutionary genomics. Nat. Rev. Genet. 17(2), 81 (2016).
Google Scholar
Brown, R. P., Paterson, S. & Risse, J. Genomic signatures of historical allopatry and ecological divergence in an island lizard. Genome Biol. Evol. 8(11), 3618–3626 (2016).
Google Scholar
Jin, Y. & Brown, R. P. Morphological species and discordant mtDNA: A genomic analysis of Phrynocephalus lizard lineages on the Qinghai-Tibetan Plateau. Mol. Phylogenet. Evol. 139, 106523 (2019).
Google Scholar
Yang, W. et al. Spatial variation in gene flow across a hybrid zone reveals causes of reproductive isolation and asymmetric introgression in wall lizards. Evolution 74(7), 1289–1300 (2020).
Google Scholar
Li, Y. L., Xue, D. X., Zhang, B. D. & Liu, J. X. Population genomic signatures of genetic structure and environmental selection in the catadromous roughskin sculpin Trachidermus fasciatus. Genome Biol. Evol. 11(7), 1751–1764 (2019).
Google Scholar
Hedrick, P. W. & Kalinowski, S. T. Inbreeding depression in conservation biology. Annu. Rev. Ecol. Syst. 31(1), 139–162 (2000).
Google Scholar
Willi, Y., Van Buskirk, J. & Hoffmann, A. A. Limits to the adaptive potential of small populations. Annu. Rev. Ecol. Evol. Syst. 37, 433–458 (2006).
Google Scholar
Perrier, C., Ferchaud, A. L., Sirois, P., Thibault, I. & Bernatchez, L. Do genetic drift and accumulation of deleterious mutations preclude adaptation? Empirical investigation using RAD seq in a northern lacustrine fish. Mol. Ecol. 26(22), 6317–6335 (2017).
Google Scholar
Sovic, M., Fries, A., Martin, S. A. & Lisle Gibbs, H. Genetic signatures of small effective population sizes and demographic declines in an endangered rattlesnake, Sistrurus catenatus. Evol. Appl. 12(4), 664–678 (2019).
Google Scholar
Cao, R. et al. Genetic structure and diversity of Australian freshwater crocodiles (Crocodylus johnstoni) from the Kimberley, Western Australia. Conserv. Genet. 21, 421–429 (2020).
Google Scholar
Lowe, W. H. & Allendorf, F. W. What can genetics tell us about population connectivity?. Mol. Ecol. 19(15), 3038–3051 (2010).
Google Scholar
Ralls, K. et al. Call for a paradigm shift in the genetic management of fragmented populations. Conserv. Lett. 11(2), e12412 (2018).
Google Scholar
Benestan, L. et al. Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus). Mol. Ecol. 25(20), 5073–5092 (2016).
Google Scholar
Campbell-Staton, S. C., Edwards, S. V. & Losos, J. B. Climate mediated adaptation after mainland colonization of an ancestrally subtropical island lizard, Anolis carolinensis. J. Evol. Biol. 29(11), 2168–2180 (2016).
Google Scholar
Rodríguez, A. et al. Genomic and phenotypic signatures of climate adaptation in an Anolis lizard. Ecol. Evol. 7(16), 6390–6403 (2017).
Google Scholar
Cooper, W. E., Hawlena, D. & Pérez-Mellado, V. Islet tameness: Escape behavior and refuge use in populations of the Balearic lizard (Podarcis lilfordi) exposed to differing predation pressure. Can. J. Zool. 87(10), 912–919 (2009).
Google Scholar
Cooper, W. E., Hawlena, D. & Pérez-Mellado, V. Influence of risk on hiding time by Balearic lizards (Podarcis lilfordi): Predator approach speed, directness, persistence, and proximity. Herpetologica 66(2), 131–141 (2010).
Google Scholar
Cooper, W. E. & Pérez-Mellado, V. Island tameness: Reduced escape responses and morphological and physiological antipredatory adaptations related to escape in lizards. In Islands and Evolution (eds Pérez-Mellado, V. & Ramon, M. M.) 231–253 (Institut Menorquí d’Estudis, 2010).
Cooper, W. E. & Pérez-Mellado, V. Historical influence of predation pressure on escape by Podarcis lizards in the Balearic Islands. Biol. J. Linn. Soc. 107, 254–268 (2012).
Google Scholar
Mayr, E. Animal Species and Evolution (The Belknap Press, Harvard University Press, 1963).
Bover, P. et al. Late Miocene/Early Pliocene vertebrate fauna from Mallorca (Balearic Islands, Western Mediterranean): An update. Integr. Zool. 9, 183–196 (2014).
Google Scholar
Vervust, B., Grbac, I. & Van Damme, R. Differences in morphology, performance and behaviour between recently diverged populations of Podarcissicula mirror differences in predation pressure. Oikos 116(8), 1343–1352 (2007).
Google Scholar
Marques, D. A., Jones, F. C., Di Palma, F., Kingsley, D. M. & Reimchen, T. E. Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation. Nat. Ecol. Evol. 2(7), 1128–1138 (2018).
Google Scholar
Johannesson, K., Le Moan, A., Perini, S. & André, C. A Darwinian laboratory of multiple contact zones. Trends Ecol. Evol. 35, 1021–1036 (2020).
Google Scholar
Stockwell, C. A. & Ashley, M. V. Rapid adaptation and conservation. Conserv. Biol. 18, 272–273 (2004).
Google Scholar
Truong, H. T. et al. Sequence-based genotyping for marker discovery and co-dominant scoring in germplasm and populations. PLoS ONE 7(5), e37565 (2012).
Google Scholar
Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. & Cresko, W. A. Stacks: An analysis tool set for population genomics. Mol. Ecol. 22(11), 3124–3140 (2013).
Google Scholar
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27(15), 2156–2158 (2011).
Google Scholar
Goudet, J. & Jombart, T. hierfstat: Estimation and tests of hierarchical F-statistics. R package version 0.5-7. Available from http://github.com/jgx65/hierfstat (2015).
Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19(9), 1655–1664 (2009).
Google Scholar
Jombart, T. & Ahmed, I. Adegenet 1.3-1: New tools for the analysis of genome-wide SNP data. Bioinformatics 27(21), 3070–3071 (2011).
Google Scholar
Kumar, S., Stecher, G. & Tamura, K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33(7), 1870–1874 (2016).
Google Scholar
Do, C. et al. NeEstimator v2: Re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Mol. Ecol. Resour. 14(1), 209–214 (2014).
Google Scholar
Sundqvist, L., Keenan, K., Zackrisson, M., Prodöhl, P. & Kleinhans, D. Directional genetic differentiation and relative migration. Ecol. Evol. 6(11), 3461–3475 (2016).
Google Scholar
Keenan, K., McGinnity, P., Cross, T. F., Crozier, W. W. & Prodöhl, P. A. diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors. Methods Ecol. Evol. 4(8), 782–788 (2013).
Google Scholar
Nei, M. The Theory and Estimation of Genetic Distance. Genetic Structure of Populations 45–54 (University of Hawaii Press, 1973).
Foll, M. & Gaggiotti, O. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective. Genetics 180(2), 977–993 (2008).
Google Scholar
Frichot, E., Schoville, S. D., Bouchard, G. & François, O. Testing for associations between loci and environmental gradients using latent factor mixed models. Mol. Biol. Evol. 30(7), 1687–1699 (2013).
Google Scholar
Rellstab, C., Gugerli, F., Eckert, A. J., Hancock, A. M. & Holderegger, R. A practical guide to environmental association analysis in landscape genomics. Mol. Ecol. 24(17), 4348–4370 (2015).
Google Scholar
Forester, B. R., Lasky, J. R., Wagner, H. H. & Urban, D. L. Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations. Mol. Ecol. 27(9), 2215–2233 (2018).
Google Scholar
Jin, L., Yu, J. P., Yang, Z. J., Merilä, J. & Liao, W. B. Modulation of gene expression in liver of hibernating Asiatic Toads (Bufo gargarizans). Int. J. Mol. Sci. 19(8), 2363 (2018).
Google Scholar
Secor, S. M. & Carey, H. V. Integrative physiology of fasting. Compr. Physiol. 6(2), 773–825 (2011).
Bahudhanapati, H., Bhattacharya, S. & Wei, S. Evolution of vertebrate adam genes; duplication of testicular adams from ancient adam9/9-like loci. PLoS ONE 10(8), e0136281 (2015).
Google Scholar
Alibardi, L. Immunolocalization of matrix metalloproteinases in regenerating lizard tail suggests that an intense remodelling activity allows for apical tail growth. Acta Zool. 101(2), 124–132 (2020).
Google Scholar
The UniProt Consortium. UniProt: The universal protein knowledgebase. Nucleic Acids Res. 45, D158–D169 (2017).
Google Scholar
Tosini, G., Baba, K., Hwang, C. K. & Iuvone, P. M. Melatonin: An underappreciated player in retinal physiology and pathophysiology. Exp. Eye Res. 103, 82–89 (2012).
Google Scholar
Voronin, D. A. & Kiseleva, E. V. Functional role of proteins containing ankyrin repeats. Tsitologiia 49(12), 989–999 (2007).
Google Scholar
Yang, L. et al. Transcriptome analysis and identification of genes associated with chicken sperm storage duration. Poult. Sci. 99(2), 1199–1208 (2020).
Google Scholar
Geng, X. et al. Proteomic analysis of the skin of Chinese giant salamander (Andrias davidianus). J. Proteomics 119, 196–208 (2015).
Google Scholar
Subramaniam, N., Petrik, J. J. & Vickaryous, M. K. VEGF, FGF-2 and TGF β expression in the normal and regenerating epidermis of geckos: Implications for epidermal homeostasis and wound healing in reptiles. J. Anat. 232(5), 768–782 (2018).
Google Scholar
Pillai, A., Desai, I. & Balakrishnan, S. Pharmacological inhibition of FGFR1 signaling attenuates the progression of tail regeneration in the northern house gecko Hemidactylus flaviviridis. Int. J. Life Sci. Biotechnol. Pharma Res. 2, 263–278 (2013).
Schoettl, T., Fischer, I. P. & Ussar, S. Heterogeneity of adipose tissue in development and metabolic function. J. Exp. Biol. 221, jeb162958 (2018).
Google Scholar
Wang, X. et al. Identification of a novel 43-bp insertion in the heparan sulfate 6-O-sulfotransferase 3 (HS6ST3) gene and its associations with growth and carcass traits in chickens. Anim. Biotechnol. 30(3), 252–259 (2019).
Google Scholar
Sun, C. et al. Genome-wide association study revealed a promising region and candidate genes for eggshell quality in an F2 resource population. BMC Genomics 16(1), 565 (2015).
Google Scholar
Ng, C. S. et al. Transcriptomic analyses of regenerating adult feathers in chicken. BMC Genomics 16(1), 756 (2015).
Google Scholar
Qu, Y. et al. Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau. Nat. Commun. 4(1), 1–9 (2013).
Fischer, I., Kosik, K. S. & Sapirstein, V. S. Heterogeneity of microtubule-associated protein (MAP2) in vertebrate brains. Brain Res. 436(1), 39–48 (1987).
Google Scholar
Singchat, W. et al. Chromosome map of the Siamese cobra: Did partial synteny of sex chromosomes in the amniote represent “a hypothetical ancestral super-sex chromosome” or random distribution?. BMC Genomics 19(1), 939 (2018).
Google Scholar
Tosches, M. A. et al. Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles. Science 360(6391), 881–888 (2018).
Google Scholar
Vitulo, N., Dalla Valle, L., Skobo, T., Valle, G. & Alibardi, L. Transcriptome analysis of the regenerating tail vs. the scarring limb in lizard reveals pathways leading to successful vs. unsuccessful organ regeneration in amniotes. Dev. Dyn. 246(2), 116–134 (2017).
Google Scholar
Carobbio, S., Guénantin, A. C., Samuelson, I., Bahri, M. & Vidal-Puig, A. Brown and beige fat: From molecules to physiology and pathophysiology. Biochim. Biophys. Acta Mol. Cell Biol. Lipids 1864(1), 37–50 (2019).
Google Scholar
Source: Ecology - nature.com
