Kuhn, T., Cunze, S., Kochmann, J. & Klimpel, S. Environmental variables and definitive host distribution: A habitat suitability modelling for endohelminth parasites in the marine realm. Sci. Rep. 6, 30246 (2016).
Google Scholar
Mattiucci, S. & Nascetti, G. Advances and trends in the molecular systematics of anisakid nematodes, with implications for their evolutionary ecology and host-parasite co-evolutionary processes. Adv. Parasitol. 66, 47–148 (2008).
Google Scholar
Mattiucci, S., Cipriani, P., Levsen, A., Paoletti, M. & Nascetti, G. Molecular epidemiology of Anisakis and Anisakiasis: An ecological and evolutionary road map. Adv. Parasitol. 99, 93–263 (2018).
Google Scholar
Colón-Llavina, M. M. et al. Additional records of metazoan parasites from Caribbean marine mammals, including genetically identified anisakid nematodes. Parasitol. Res. 105, 1239–1252 (2009).
Google Scholar
Iñiguez, A. M., Santos, C. P. & Vicente, A. C. P. Genetic characterization of Anisakis typica and Anisakis physeteris from marine mammals and fish from the Atlantic Ocean off Brazil. Vet. Parasitol. 165, 350–356 (2009).
Google Scholar
Gomes, T. L. et al. Anisakis spp. in toothed and baleen whales from Japanese waters with notes on their potential role as biological tags. Parasitol. Int. 80, 102228 (2021).
Google Scholar
Irigoitia, M. et al. Genetic identification of Anisakis spp. (Nematoda: Anisakidae) from cetaceans of the Southwestern Atlantic Ocean: Ecological and zoogeographical implications. Parasit. Res. 120, 1–13 (2021).
Google Scholar
Ugland, K. I., Strømnes, E., Berland, B. & Aspholm, P. E. Growth, fecundity and sex ratio of adult whaleworm (Anisakis simplex; Nematoda, Ascaridoidea, Anisakidae) in three whale species from the North-East Atlantic. Parasitol. Res. 92, 484–489 (2004).
Google Scholar
Berland, B. Musings on nematode parasites. Fisken og Havet 11, 1–26 (2006).
Roca-Geronès, X., Alcover, M. M., Godínez-González, C., Montoliu, I. & Fisa, R. Hybrid genotype of Anisakis simplex (s.s.) and A. pegreffii identified in third- and fourth-stage larvae from sympatric and allopatric Spanish marine waters. Animals 11, 2458 (2021).
Google Scholar
Smith, J. Ulcers associated with larval Anisakis simplex B (Nematoda: Ascaridoidea) in the forestomach of harbour porpoises Phocoena phocoena (L.). Can. J. Zool. 67, 2270–2276 (1989).
Google Scholar
Abollo, E., Lopez, A., Gestal, C., Benavente, P. & Pascual, S. Macroparasites in cetaceans stranded on the northwestern Spanish Atlantic coast. Dis. Aquat. Org. 32, 227–231 (1998).
Google Scholar
Hrabar, J., Bočina, I., Gudan Kurilj, A., Đuras, M. & Mladineo, I. Gastric lesions in dolphins stranded along the Eastern Adriatic coast. Dis. Aquat. Organ. 125, 125–139 (2017).
Google Scholar
Pons-Bordas, C. et al. Recent increase of ulcerative lesions caused by Anisakis spp. in cetaceans from the north-east Atlantic. J. Helminthol. 94, E127 (2020).
Google Scholar
Ryeng, K. A., Lakemeyer, J., Roller, M., Wohlsein, P. & Sieber, U. Pathological findings in bycaught harbour porpoises (Phocoena phocoena) from the coast of Northern Norway. Polar Biol. 45, 45–57 (2021).
Google Scholar
Mattiucci, S., Cipriani, P., Paoletti, M., Levsen, A. & Nascetti, G. Reviewing biodiversity and epidemiological aspects of anisakid nematodes from the North East Atlantic Ocean. J. Helminthol. 91, 422–439 (2017).
Google Scholar
Mattiucci, S. et al. Novel polymorphic microsatellite loci in Anisakis pegreffii and A. simplex (s.s.) (Nematoda: Anisakidae): Implications for species recognition and population genetic analysis. Parasitology 146, 1387–1403 (2019).
Google Scholar
Shamsi, S., Sprohnle-Barrera, C. & Hossen, M. D. S. Occurrence of Anisakis spp. (Nematoda: Anisakidae) in a pygmy sperm whale Kogia breviceps (Cetacea: Kogiidae) in Australian waters. Dis. Aquat. Organ. 134, 65–74 (2019).
Google Scholar
Cavallero, S., Nadler, S. A., Paggi, L., Barros, N. B. & D’Amelio, S. Molecular characterization and phylogeny of anisakid nematodes from cetaceans from southeastern Atlantic coasts of USA, Gulf of Mexico, and Caribbean Sea. Parasitol. Res. 108, 781–792 (2011).
Google Scholar
Klimpel, S. & Palm, H. W. Anisakid nematode (Ascaridoidea) life cycles and distribution: increasing zoonotic potential in the time of climate change? In Progress in Parasitology, Parasitology Research Monographs Vol. 2 (ed. Mehlhorn, H.) 201–222 (Springer, 2011).
Li, L. et al. Molecular phylogeny and dating reveal a terrestrial origin in the early Carboniferous for Ascaridoid nematodes. Syst. Biol. 67, 888–900 (2018).
Google Scholar
Shamsi, S. Recent advances in our knowledge of Australian anisakid nematodes. Int. J. Parasitol. Parasites Wildl. 3, 178–187 (2014).
Google Scholar
Mattiucci, S. et al. Genetic and morphological approaches distinguish the three sibling species of the Anisakis simplex species complex, with a species designation as Anisakis berlandi n. sp. for A. simplex sp. C (Nematoda: Anisakidae). J. Parasitol. 100, 199–214 (2014).
Google Scholar
D’Amelio, S. et al. Genetic markers in ribosomal DNA for the identification of members of the genus Anisakis (Nematoda: Ascaridoidea) defined by polymerase-chain-reaction-based restriction fragment length polymorphism. Int. J. Parasitol. 30, 223–226 (2000).
Google Scholar
Valentini, A. et al. Genetic relationships among Anisakis species (Nematoda: Anisakidae) inferred from mitochondrial cox2 sequences, and comparison with allozyme data. J. Parasitol. 92, 156–166 (2006).
Google Scholar
Mattiucci, S. et al. No more time to stay ‘single’ in the detection of Anisakis pegreffii, A. simplex (s.s.) and hybridization events between them: A multi-marker nuclear genotyping approach. Parasitology 143, 998–1011 (2016).
Google Scholar
Palomba, M., Paoletti, M., Webb, S. C., Nascetti, G. & Mattiucci, S. A novel nuclear marker and development of an ARMS-PCR assay targeting the metallopeptidase 10 (nas 10) locus to identify the species of the Anisakis simplex (s. l.) complex (Nematoda, Anisakidae). Parasite 27, 39 (2020).
Google Scholar
Mladineo, I. et al. Anisakis simplex complex: Ecological significance of recombinant genotypes in an allopatric area of the Adriatic Sea inferred by genome-derived simple sequence repeats. Int. J. Parasitol. 47, 215–223 (2017).
Google Scholar
Bello, E., Paoletti, M., Webb, S. C., Nascetti, G. & Mattiucci, S. Cross-species utility of microsatellite loci for the genetic characterisation of Anisakis berlandi (Nematoda: Anisakidae). Parasite 27, 9 (2020).
Google Scholar
Bello, E. et al. Investigating the genetic structure of the parasites Anisakis pegreffii and A. berlandi (Nematoda: Anisakidae) in a sympatric area of the southern Pacific Ocean waters using a multilocus genotyping approach: First evidence of their interspecific hybridization. Infect. Genet. Evol. 92, 104887 (2021).
Google Scholar
Klapper, R. et al. Anisakid nematodes in beaked redfish (Sebastes mentella) from three fishing grounds in the North Atlantic, with special notes on distribution in the fish musculature. Vet. Parasit. 207, 72–80 (2015).
Google Scholar
Bušelić, I. et al. Geographic and host size variations as indicators of Anisakis pegreffii infection in European pilchard (Sardina pilchardus) from the Mediterranean Sea: Food safety implications. Int. J. Food Microb. 266, 126–132 (2018).
Google Scholar
Cipriani, P. et al. Anisakis pegreffii (Nematoda: Anisakidae) in European anchovy Engraulis encrasicolus from the Mediterranean Sea: Fishing ground as a predictor of parasite distribution. Fish. Res. 202, 59–68 (2018).
Google Scholar
Cipriani, P. et al. The Mediterranean European hake, Merluccius merluccius: Detecting drivers influencing the Anisakis spp. larvae distribution. Fish. Res. 202, 79–89 (2018).
Google Scholar
Levsen, A. et al. A survey of zoonotic nematodes of commercial key fish species from major European fishing grounds—Introducing the FP7 PARASITE exposure assessment study. Fish. Res. 202, 4–21 (2018).
Google Scholar
Gibson, D. I. et al. A survey of the helminth parasites of cetaceans stranded on the coast of England and Wales during the period 1990–1994. J. Zool. 244, 563–574 (1998).
Google Scholar
Mattiucci, S. et al. Evidence for a new species of Anisakis Dujardin, 1845: Morphological description and genetic relationships between congeners (Nematoda: Anisakidae). Syst. Parasitol. 61, 157–171 (2005).
Google Scholar
Blažeković, K., Pleić, I. L., Đuras, M., Gomerčić, T. & Mladineo, I. Three Anisakis spp. isolated from toothed whales stranded along the eastern Adriatic Sea coast. Int. J. Parasitol. 45, 17–31 (2015).
Google Scholar
Mazzariol, S. et al. Multidisciplinary studies on a sick-leader syndrome-associated mass stranding of sperm whales (Physeter macrocephalus) along the Adriatic coast of Italy. Sci. Rep. 8, 11577 (2018).
Google Scholar
Gomerčić, M. et al. Bottlenose dolphin (Tursiops truncatus) depredation resulting in larynx strangulation with gill-net parts. Mar. Mammal Sci. 25, 392–401 (2009).
Google Scholar
Pyenson, N. The high fidelity of the cetacean stranding record: Insights into measuring diversity by integrating taphonomy and macroecology. Proc. R. Soc. B. 278, 3608–3616 (2011).
Google Scholar
MacLeod, C. D., Santos, B., López Fernandez, A. & Pierce, G. Relative prey size consumption in toothed whales: Implications for prey selection and level of specialisation. Mar. Ecol. Prog. Ser. 326, 295–307 (2006).
Google Scholar
Santos, M. B. et al. Pygmy sperm whales Kogia Breviceps in the Northeast Atlantic: New information on stomach contents and strandings. Mar. Mammal Sci. 22, 600–616 (2006).
Google Scholar
Covelo, P., Martínez-Cedeira, J., Llavona, A., Díaz, J. & López Fernandez, A. Strandings of Beaked Whales (Ziphiidae) in Galicia (NW Spain) between 1990 and 2013. J. Mar. Biol. Assoc. U. K. 1, 1–7 (2016).
Moura, J. et al. Stranding events of Kogia whales along the Brazilian Coast. PLoS ONE 11, e0146108 (2016).
Google Scholar
Cordes, D. O. The causes of whale strandings. N. Z. Vet. J. 30, 21–24 (1982).
Google Scholar
Frantzis, A. Does acoustic testing strand whales?. Nature 392, 29 (1998).
Google Scholar
Laist, D. W., Knowlton, A. R., Mead, J. G., Collet, A. S. & Podesta, M. Collisions between ships and whales. Mar. Mammal Sci. 17, 35–75 (2001).
Google Scholar
Jepson, P. D. et al. Gas-bubble lesions in stranded cetaceans. Nature 425, 575–576 (2003).
Google Scholar
Pierce, G. J., Santos, M. B., Smeenk, C., Saveliev, A. & Zuur, A. F. Historical trends in the incidence of strandings of sperm whales (Physeter macrocephalus) on North Sea coasts: An association with positive temperature anomalies. Fish. Res. 87, 219–228 (2007).
Google Scholar
Coombs, E. et al. What can cetacean stranding records tell us? A study of UK and Irish cetacean diversity over the past 100 years. Mar. Mammal Sci. 35, 1527–1555 (2019).
Google Scholar
Fossi, M. C., Baini, M., Panti, C. & Baulch, S. Chapter 6—Impacts of marine litter on cetaceans: A focus on plastic pollution. In Marine Mammal Ecotoxicology (eds Fossi, M. C. & Panti, C.) 147–184 (Academic Press, 2018).
Google Scholar
Alexiadou, P., Foskolos, I. & Frantzis, A. Ingestion of macroplastics by odontocetes of the Greek Seas, Eastern Mediterranean: Often deadly!. Mar. Poll. Bull. 146, 67–75 (2019).
Google Scholar
Nicol, C. et al. Anthropogenic threats to Wild Cetacean welfare and a tool to inform policy in this area. Vet. Sci. Res. J. 7, 57 (2020).
Abollo, E., Paggi, L., Pascual, S. & D’Amelio, S. Occurrence of recombinant genotypes of Anisakis simplex s.s. and Anisakis pegreffii (Nematoda: Anisakidae) in an area of sympatry. Infect. Genet. Evol. 3, 175–181 (2003).
Google Scholar
Marques, J. F., Cabral, H., Busi, M. & D’Amelio, S. Molecular identification of Anisakis species from Pleuronectiformes off the Portuguese coast. J. Helminthol. 80, 47–51 (2006).
Google Scholar
Lee, M. H., Cheon, D. & Choi, C. Molecular genotyping of Anisakis species from Korean sea fish by polymerase chain reaction–restriction fragment length polymorphism (PCR-RFLP). Food Control 20, 623–626 (2009).
Google Scholar
Suzuki, J., Murata, R., Hosaka, M. & Araki, J. Risk factors for human Anisakis infection and association between the geographic origins of Scomber japonicus and anisakid nematodes. Int. J. Food Microbiol. 137, 88–93 (2010).
Google Scholar
Molina-Fernández, D. et al. Fishing area and fish size as risk factors of Anisakis infection in sardines (Sardina pilchardus) from Iberian waters, southwestern Europe. Int. J. Food Microb. 203, 27–34 (2015).
Google Scholar
Cipriani, P. et al. Genetic identification and distribution of the parasitic larvae of Anisakis pegreffii and Anisakis simplex (s.s.) in European hake Merluccius merluccius from the Tyrrhenian Sea and Spanish Atlantic coast: Implications for food safety. Int. J. Food Microbiol. 198, 1–8 (2015).
Google Scholar
Gómez-Mateos, M., Merino-Espinosa, G., Corpas-López, V., Valero-López, A. & Martín-Sánchez, J. A multi-restriction fragment length polymorphism genotyping approach including the beta-tubulin gene as a new differential nuclear marker for the recognition of the cryptic species Anisakis simplex s.s. and Anisakis pegreffii and their hybridization events. Vet. Parasitol. 283, 109162 (2020).
Google Scholar
Klimpel, S., Busch, M. W., Kuhn, T., Rohde, A. & Palm, H. The Anisakis simplex complex off the South Shetland Islands (Antarctica): Endemic populations versus introduction through migratory hosts. Mar. Ecol. Progr. Ser. 40, 1–11 (2010).
Google Scholar
Santoro, M. et al. Helminth parasites of the dwarf sperm whale Kogia sima (Cetacea: Kogiidae) from the Mediterranean Sea, with implications on host ecology. Dis. Aquat. Organ. 129, 175–182 (2018).
Google Scholar
Mattiucci, S., Nascetti, G., Bullini, L., Orecchia, P. & Paggi, L. Genetic structure of Anisakis physeteris and its differentiation from the Anisakis simplex complex (Ascaridida: Anisakidae). Parasitology 93, 383–387 (1986).
Google Scholar
Palomba, M., Mattiucci, S., Crocetta, F., Osca, D. & Santoro, M. Insights into the role of deep-sea squids of the genus Histioteuthis (Histioteuthidae) in the life cycle of ascaridoid parasites in the Central Mediterranean Sea waters. Sci. Rep. 11, 7135 (2021).
Google Scholar
Clarke, M. R., Martins, H. R. & Pascoe, P. The diet of sperm whales (Physeter macrocephalus Linnaeus 1758) off the Azores. Philos. Trans. R. Soc. Lond. B. 339, 67–82 (1993).
Google Scholar
Santos, M. & Pierce, G. A note on niche overlap in teuthophagous whales in the northern Northeast Atlantic. Phuket Mar. Biol. Cent. Res. Bull. 66, 291–298 (2005).
Rendell, L. & Frantzis, A. Mediterranean Sperm Whales, Physeter macrocephalus: The precarious state of a lost tribe. In Advances in Marine Biology (eds Notarbartolo di Sciara, G. et al.) 37–74 (Academic Press, 2016).
Foskolos, I., Koutouzi, N., Polychronidis, L., Alexiadou, P. & Frantzis, A. A taste for squid: the diet of sperm whales stranded in Greece, Eastern Mediterranean. Deep Sea Res. I Oceanogr. Res. Pap. 155, 103164 (2020).
Google Scholar
Mattiucci, S. et al. Genetic heterogeneity within Anisakis physeteris (sensu lato) (Nematoda: Anisakidae) from sperm whales, Physeter macrocephalus, from Mediterranean Sea (Apulian coast) and Atlantic Ocean (Canaries coast). Abstract of XXVI Congresso Nazionale SoIPa. Parassitologia 52, 357 (2010).
Mattiucci, S. et al. Genetic identification and insights into the ecology of Contracaecum rudolphii A and C. rudolphii B (Nematoda: Anisakidae) from cormorants and fish of aquatic ecosystems of Central Italy. Parasitol. Res. 119, 1243–1257 (2020).
Google Scholar
Karvonen, A., Jokela, J. & Laine, A. L. Importance of sequence and timing in parasite coinfections. Trends Parasitol. 35, 109–118 (2019).
Google Scholar
Paggi, L. et al. A new species of Anisakis Dujardin, 1845 (Nematoda: Anisakidae) from beaked whale (Ziphiidae): Allozyme and morphological evidence. Syst. Parasitol. 40, 161–174 (1998).
Google Scholar
Mattiucci, S., Paoletti, M. & Webb, S. C. Anisakis nascettii n. sp. (Nematoda: Anisakidae) from beaked whales of the southern hemisphere: Morphological description, genetic relationships between congeners and ecological data. Syst. Parasitol. 74, 199–217 (2009).
Google Scholar
Leatherwood, S. & Reeves, R. R. The Sierra Club Handbook of Whales and Dolphins 302 (Sierra Club Books, 1983).
Ross, G. J. B. The smaller cetaceans of the South East coast of southern Africa. Ann. Cape Prov. Mus. Nat. Hist. 15, 173–410 (1984).
Santos, B. et al. Feeding ecology of Cuvier’s beaked whale (Ziphius cavirostris): A review with new information on the diet of this species. J. Mar. Biol. Assoc. U. K. 81, 687–694 (2001).
Google Scholar
Lakemeyer, J. et al. Anisakid nematode species identification in harbour porpoises (Phocoena phocoena) from the North Sea, Baltic Sea and North Atlantic using RFLP analysis. Int. J. Parasitol. Parasites Wildl. 12, 93–98 (2020).
Google Scholar
Højgaard, D. No significant development of Anisakis simplex (Nematoda, Anisakidae) eggs in the intestine of long-finned pilot whales, Globicephala melas (Traill, 1809). Sarsia 84, 479–482 (1999).
Google Scholar
Smith, J. W. & Wootten, R. Experimental studies on the migration of Anisakis sp. larvae (Nematoda: ascaridida) into the flesh of herring, Clupea harengus L. Int. J. Parasitol. 5, 133–136 (1975).
Google Scholar
Iglesias, L., Valero, A., Benítez, R. & Adroher, F. J. In vitro cultivation of Anisakis simplex: Pepsin increases survival and moulting from fourth larval to adult stage. Parasitology 123, 285–291 (2001).
Google Scholar
Mladineo, I. & Poljak, V. Ecology and genetic structure of zoonotic Anisakis spp. from adriatic commercial fish species. Appl. Environ. Microbiol. 80, 1281–1290 (2014).
Google Scholar
Mladineo, I., Bušelić, I., Hrabar, J., Vrbatović, A. & Radonić, I. Population parameters and mito-nuclear mosaicism of Anisakis spp. in the Adriatic Sea. Mol. Biochem. Parasitol. 212, 46–54 (2017).
Google Scholar
Levsen, A. et al. Anisakis species composition and infection characteristics in Atlantic mackerel, Scomber scombrus, from major European fishing grounds—Reflecting changing fish host distribution and migration pattern. Fish. Res. 202, 112–121 (2018).
Google Scholar
Gay, M. et al. Infection levels and species diversity of ascaridoid nematodes in Atlantic cod, Gadus morhua, are correlated with geographic area and fish size. Fish. Res. 202, 90–102 (2018).
Google Scholar
Stevick, P. et al. Segregation of migration by feeding ground origin in North Atlantic humpback whales (Megaptera novaeangliae). J. Zool. 259, 231–237 (2003).
Google Scholar
Lambert, E. et al. Cetacean range and climate in the eastern North Atlantic: Future predictions and implications for conservation. Glob. Change Biol. 20, 1782–1793 (2014).
Google Scholar
Szesciorka, A. et al. Timing is everything: Drivers of interannual variability in blue whale migration. Sci. Rep. 10, 7710 (2020).
Google Scholar
Hoelzel, A. R., Goldsworthy, S. D. & Fleischer, R. C. Population genetic structure. In Marine Mammal Biology: An Evolutionary Approach (ed. Hoelzel, A. R.) 1–134 (Blackwell Publishing, 2002).
Lahaye, V. et al. Long-term dietary segregation of common dolphins Delphinus delphis in the Bay of Biscay, determined using cadmium as an ecological tracer. Mar. Ecol. Prog. Ser. 305, 275–285 (2005).
Google Scholar
Mattiucci, S. et al. Population genetic structure of the parasite Anisakis simplex (s.s.) collected in Clupea harengus L. from North East Atlantic fishing grounds. Fish. Res. 202, 103–111 (2018).
Google Scholar
Natoli, A. et al. Conservation genetics of the short-beaked common dolphin (Delphinus delphis) in the Mediterranean Sea and in the eastern North Atlantic Ocean. Conserv. Genet. 9, 1479–1487 (2008).
Google Scholar
Mazzariol, S. et al. Sometimes sperm whales (Physeter macrocephalus) cannot find their way back to the high seas: A multidisciplinary study on a mass stranding. PLoS ONE 6, e19417 (2011).
Google Scholar
Mazzariol, S. et al. Dolphin Morbillivirus associated with a mass stranding of sperm Whales, Italy. Emerg. Infect. Dis. 23, 144–146 (2017).
Google Scholar
Podestà, M. et al. Cuvier’s beaked whale, Ziphius cavirostris, distribution and occurrence in the Mediterranean Sea: High-use areas and conservation threats. Adv. Mar. Biol. 75, 103–140 (2016).
Google Scholar
Davies, K., Pagan, C. & Nadler, S. A. Host population expansion and the genetic architecture of the pinniped hookworm Uncinaria lucasi. J. Parasitol. 106, 383–391 (2020).
Google Scholar
IJsseldijk, L. L., Brownlow, A. C. & Mazzariol, S. European best practice on cetacean post-mortem investigation and tissue sampling (ed. IJsseldijk, L. L., Brownlow, A. C., & Mazzariol, S.) 1–72 (ASCOBANS/ACCOBAMS, 2019).
Nadler, S. A. & Hudspeth, D. S. Phylogeny of the Ascaridoidea (Nematoda: Ascaridida) based on three genes and morphology: Hypotheses of structural and sequence evolution. J. Parasitol. 86, 380–393 (2000).
Google Scholar
Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947–2948 (2007).
Google Scholar
Hall, T. A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95–98 (1999).
Google Scholar
Suchard, M. A. et al. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evol. 4, vey016 (2018).
Google Scholar
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. jModelTest 2: More models, new heuristics and parallel computing. Nat. Methods 9, 772 (2012).
Google Scholar
Zuckerkandl, E. & Pauling, L. Molecular disease, evolution, and genetic heterogeneity. In Horizons in Biochemistry (eds Kasha, M. & Pullman, B.) 189–225 (Academic Press, 1962).
Gernhard, T. The conditioned reconstructed process. J. Theor. Biol. 253, 769–778 (2008).
Google Scholar
Rambaut, A., Drummond, A. J., Xie, D., Baele, G. & Suchard, M. A. Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Syst. Biol. 67, 901–904 (2018).
Google Scholar
Weir, B. & Cockerham, C. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358–1370 (1984).
Google Scholar
Excoffier, L. & Lischer, H. E. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10, 564–567 (2010).
Google Scholar
Librado, P. & Rozas, J. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451–1452 (2009).
Google Scholar
Bandelt, H., Forster, P. & Röhl, A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16, 37–48 (1999).
Google Scholar
Clement, M., Posada, D. & Crandall, K. A. TCS: A computer program to estimate gene genealogies. Mol. Ecol. 9, 1657–1659 (2000).
Google Scholar
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