Alsdurf J, Anderson C, Siemens DH (2016) Epigenetics of drought-induced trans-generational plasticity: consequences for range limit development. Ann Bot 8:plv146
Anderson JT, Willis JH, Mitchell-Olds T (2011) Evolutionary genetics of plant adaptation. Trends Genet 27:258–66
Aragón-Gastélum JL, Flores J, Yáñez-Espinosa L, Badano E, Ramírez-Tobías HM, Rodas-Ortíz JP et al. (2014) Induced climate change impairs photosynthetic performance in Echinocactus platyacanthus, an especially protected Mexican cactus species. Flora—Morphol Distrib Funct Ecol Plants 209:499–503
Banerjee A, Roychoudhury A (2017) Epigenetic regulation during salinity and drought stress in plants: histone modifications and DNA methylation. Plant Gene 11:199–204
Bartels A, Han Q, Nair P, Stacey L, Gaynier H, Mosley M et al. (2018) Dynamic DNA methylation in plant growth and development. Int J Mol Sci 19:2144
Benjamini Y, Hochberg Y (1995) Controlling the False Discovery Rate: a practical and powerful approach to multiple testing. J R Stat Soc 57:289–300
Bonasio R, Tu S, Reinberg D (2010) Molecular signals of epigenetic states. Science 330:612–6
Bongers FJ, Olmo M, Lopez-Iglesias B, Anten NPR, Villar R (2017) Drought responses, phenotypic plasticity and survival of Mediterranean species in two different microclimatic sites. Plant Biol 19:386–395
Bossdorf O, Richards CL, Pigliucci M (2008) Epigenetics for ecologists. Ecol Lett 11:106–115
Bossdorf O, Zhang Y (2011) A truly ecological epigenetics study. Mol Ecol 20:1572–1574
Chapin FS, Autumn K, Pugnaire F (1993) Evolution of suites of traits in response to environmental stress. Am Nat 142:78–92
Conrath U, Pieterse CMJ, Mauch-Mani B (2002) Priming in plant-pathogen interactions. Trends Plant Sci 7:210–6
Dabros A, Fyles JW (2010) Effects of open-top chambers and substrate type on biogeochemical processes at disturbed boreal forest sites in northwestern Quebec. Plant Soil 327:465–479
Delgado-Baquerizo M, Maestre FT, Rodríguez JGP, Gallardo A (2013) Biological soil crusts promote N accumulation in response to dew events in dryland soils. Soil Biol Biochem 62:22–27
Diez CM, Meca E, Tenaillon MI, Gaut BS (2014) Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. PLoS Genet 10:e1004298
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
Ewens WJ (2013) Genetic variation. In: Maloy S, Hughes K (eds) Brenner’s encyclopedia of genetics, pp 290–291
Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes. Genetics 131:479–91
Fernández-Pascual E, Jiménez-Alfaro B, Caujapé-Castells J, Jaén-Molina R, Díaz TE (2013) A local dormancy cline is related to the seed maturation environment, population genetic composition and climate. Ann Bot 112:937–45
Forestan C, Aiese Cigliano R, Farinati S, Lunardon A, Sanseverino W, Varotto S (2016) Stress-induced and epigenetic-mediated maize transcriptome regulation study by means of transcriptome reannotation and differential expression analysis. Sci Rep 6:30446
Fotiou C, Damialis A, Krigas N, Vokou D (2007) Hordeum murinum pollen as a contributor to pollinosis: important or trivial aeroallergen? Allergy 62:180
Freschet GT, Violle C, Bourget MY, Scherer-Lorenzen M, Fort F (2018) Allocation, morphology, physiology, architecture: the multiple facets of plant above- and below-ground responses to resource stress. N Phytol 219:1338–52
Garnier E, Shipley B, Roumet C, Laurent G (2001) A standardized protocol for the determination of specific leaf area and leaf dry matter content. Funct Ecol 15:688–95
Gayacharan JA (2013) Epigenetic responses to drought stress in rice (Oryza sativa L.). Physiol Mol Biol Plants 19:379–87
Gómez JM (2004) Importance of microhabitat and acorn burial on Quercus ilex early recruitment: Non-additive effects on multiple demographic processes. Plant Ecol 172:287–297
Gower JC (1971) A general coefficient of similarity and some of its properties. Biometrics 27:857–71
Grigorova B, Vaseva I, Demirevska K, Feller U (2011) Combined drought and heat stress in wheat: changes in some heat shock proteins. Biol Plant 55:105–111
Gu Z, Eils R, Schlesner M (2016) Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinformatics 32:2847–9
Herrera CM, Bazaga P (2010) Epigenetic differentiation and relationship to adaptive genetic divergence in discrete populations of the violet Viola cazorlensis. N Phytol 187:867–76
Herrera CM, Pozo MI, Bazaga P (2012) Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower-living yeast. Mol Ecol 21:2602–16
Hulting AG, Haavisto JL (2013) Hare barley (Hordeum murinum ssp. leporinum) biology and management in cool season perennial grass pastures of Western Oregon. J Chem Inform Model 33:1689–99
Hussain F, Durrani MJ (2009) Seasonal availability, palatability and animal preferences of forage plants in Harboi arid range land, Kalat, Pakistan. Pak J Bot 41:539–554
Ibáñez I, Schupp EW (2001) Positive and negative interactions between environmental conditions affecting Cercocarpus ledifolius seedling survival. Oecologia 129:543–550
Jakob SS, Meister A, Blattner FR (2004) The considerable genome size variation of Hordeum species (Poaceae) is linked to phylogeny, life form, ecology, and speciation rates. Mol Biol Evol 21:860–9
Jaskiewicz M, Conrath U, Peterhälnsel C (2011) Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. EMBO Rep 12:50–55
Jeremias G, Barbosa J, Marques SM, Asselman J, Gonçalves FJM, Pereira JL (2018) Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems. Mol Ecol 27:2790–2806
Jiang Y, Huang B (2000) Effects of drought or heat stress alone and in combination on Kentucky bluegrass. Crop Sci 40:1358–62
Kaur A, Grewal A, Sharma P (2018) Comparative analysis of DNA methylation changes in two contrasting wheat genotypes under water deficit. Biol Plant 62:471–8
Kronholm I, Bassett A, Baulcombe D, Collins S (2017) Epigenetic and genetic contributions to adaptation in Chlamydomonas. Mol Biol Evol 34:2285–2306
de la Riva EG, Tosto A, Pérez-Ramos IM, Navarro-Fernández CM, Olmo M, Anten NPR et al. (2016) A plant economics spectrum in Mediterranean forests along environmental gradients: is there coordination among leaf, stem and root traits? J Veg Sci 27:187–199
Lamaoui M, Jemo M, Datla R, Bekkaoui F (2018) Heat and drought stresses in crops and approaches for their mitigation. Front Chem 6:26
Lampei C (2019) Multiple simultaneous treatments change plant response from adaptive parental effects to within-generation plasticity, in Arabidopsis thaliana. Oikos 128:368–379
Latzel V, Allan E, Bortolini Silveira A, Colot V, Fischer M, Bossdorf O (2013) Epigenetic diversity increases the productivity and stability of plant populations. Nat Commun 4:2875
Laughlin DC, Leppert JJ, Moore MM, Sieg CH (2010) A multi-trait test of the leaf-height-seed plant strategy scheme with 133 species from a pine forest flora. Funct Ecol 24:493–501
Li X, Zhu J, Hu F, Ge S, Ye M, Xiang H et al. (2012) Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC Genom 2:300
Lindner M, Maroschek M, Netherer S, Kremer A, Barbati A, Garcia-Gonzalo J et al. (2010) Climate change impacts, adaptive capacity, and vulnerability of European forest ecosystems. Ecol Manag 259:698–709
Lira-Medeiros CF, Parisod C, Fernandes RA, Mata CS, Cardoso MA, Ferreira PCG (2010) Epigenetic variation in mangrove plants occurring in contrasting natural environment. PLoS One 5:e10326
Liu J, Feng L, Li J, He Z (2015) Genetic and epigenetic control of plant heat responses. Front Plant Sci 6:267
Liu G, Xia Y, Liu T, Dai S, Hou X (2018) The DNA methylome and association of differentially methylated regions with differential gene expression during heat stress in Brassica rapa. Int J Mol Sci 19:1414
Liu Z, Xin M, Qin J, Peng H, Ni Z, Yao Y et al. (2015) Temporal transcriptome profiling reveals expression partitioning of homoeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.). BMC Plant Biol 15:1
Maestre FT, Escolar C, de Guevara ML, Quero JL, Lázaro R, Delgado-Baquerizo M et al. (2013) Changes in biocrust cover drive carbon cycle responses to climate change in drylands. Glob Chang Biol 19:3835–3847
Marion GM, Henry GHR, Freckman DW, Johnstone J, Jones G, Jones MH et al. (1997) Open-top designs for manipulating field temperature in high-latitude ecosystems. Glob Chang Biol 3:20–32
Mariotte P, Vandenberghe C, Kardol P, Hagedorn F, Buttler A (2013) Subordinate plant species enhance community resistance against drought in semi‐natural grasslands (S Schwinning, Ed.). J Ecol 101:763–773
Mastan SG, Rathore MS, Bhatt VD, Yadav P, Chikara J (2012) Assessment of changes in DNA methylation by methylation-sensitive amplification polymorphism in Jatropha curcas L. subjected to salinity stress. Gene 508:125–9
Matías L, Godoy O, Gómez-Aparicio L, Pérez-Ramos IM (2018) An experimental extreme drought reduces the likelihood of species to coexist despite increasing intransitivity in competitive networks. J Ecol 106:826–837
Metzger DCH, Schulte PM (2017) Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback (Gasterosteus aculeatus). Proc R Soc B Biol Sci 284:20171667
Mitchell P, Wardlaw T, Pinkard L (2015) Combined stresses in forests (R Mahalingam, Ed.). Springer International Publishing, Switzerland
Moles AT, Westoby M (2004) Seedling survival and seed size: a synthesis of the literature. J Ecol 92:372–383
Moore LM, Lauenroth WK (2017) Differential effects of temperature and precipitation on early- vs. late-flowering species. Ecosphere 8:e01819
Muller-Landau HC (2010) The tolerance-fecundity trade-off and the maintenance of diversity in seed size. Proc Natl Acad Sci USA 107:4242–4247
Münzbergová Z, Latzel V, Šurinová M, Hadincová V (2019) DNA methylation as a possible mechanism affecting ability of natural populations to adapt to changing climate. Oikos 128:124–34
Nicotra AB, Atkin OK, Bonser SP, Davidson AM, Finnegan EJ, Mathesius U et al. (2010) Plant phenotypic plasticity in a changing climate. Trends Plant Sci 15:684–92
Ogaya R, Peñuelas J, Martínez-Vilalta J, Mangirón M (2003) Effect of drought on diameter increment of Quercus ilex, Phillyrea latifolia, and Arbutus unedo in a holm oak forest of NE Spain. Ecol Manag 180:175–184
Olea L, San Miguel A (2006) The Spanish dehesa. A traditional Mediterranean silvopastoral system linking production and nature conservation. In: Sustainable grassland productivity: Proceedings of the 21st General Meeting of the European Grassland Federation
Paun O, Bateman RM, Fay MF, Hedrén M, Civeyrel L, Chase MW (2010) Stable epigenetic effects impact adaptation in allopolyploid orchids (Dactylorhiza: Orchidaceae). Mol Biol Evol 27:2465–73
Pérez-Figueroa A (2013) msap: a tool for the statistical analysis of methylation-sensitive amplified polymorphism data. Mol Ecol Resour 13:522–527
Pérez-Ramos IM, Cambrollé J, Hidalgo-Galvez MD, Matías L, Montero-Ramírez A, Santolaya S et al. (2020) Phenological responses to climate change in communities of plants species with contrasting functional strategies. Environ Exp Bot 170:103852
Pérez-Ramos IM, Díaz-Delgado R, de la Riva EG, Villar R, Lloret F, Marañon T (2017) Climate variability and community stability in Mediterranean shrublands: the role of functional diversity and soil environment. J Ecol 105:1335–1346
Pérez-Ramos IM, Matías L, Gómez-Aparicio L, Godoy Ó (2019) Functional traits and phenotypic plasticity modulate species coexistence across contrasting climatic conditions. Nat Commun 10:2555
Piikkia K, De Temmerman L, Högy P, Pleijel H (2008) The open-top chamber impact on vapour pressure deficit and its consequences for stomatal ozone uptake. Atmos Environ 42:6513–22
Poorter H, Niinemets Ü, Poorter L, Wright IJ, Villar R (2009) Causes and consequences of variation in leaf mass per area (LMA): A meta-analysis. N Phytol 182:565–588
R Core Team (2013) R: a language and environment for statistical computing. 55: 275–286.
Reyna-López GE, Simpson J, Ruiz-Herrera J (1997) Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol Gen Genet 253:703–710
Richards CL, Verhoeven KJF, Bossdorf O (2012) Evolutionary significance of epigenetic variation. In: Plant Genome Diversity Volume 1: Plant Genomes, their Residents, and their Evolutionary Dynamics, pp 257–274
Rizhsky L (2004) When defense pathways collide. the response of Arabidopsis to a combination of drought and heat stress. Plant Physiol 134:1683–96
Rodríguez-Calcerrada J, Letts MG, Rolo V, Roset S, Rambal S (2013) Multiyear impacts of partial throughfall exclusion on Buxus sempervirens in a Mediterranean forest. Syst 22:202–213
Seifan M, Tielbörger K, Kadmon R (2010) Direct and indirect interactions among plants explain counterintuitive positive drought effects on an eastern Mediterranean shrub species. Oikos 119:1601–9
Sharifi-Rigi P, Saeidi H, Rahiminejad MR (2014) Genetic diversity and geographic distribution of variation of Hordeum murinum as revealed by retroelement insertional polymorphisms in Iran. Biology 69:469–77
Shen X, De Jonge J, Forsberg SKG, Pettersson ME, Sheng Z, Hennig L et al. (2014) Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality. PLoS Genet 10:e1004842
Suzuki MM, Bird A (2008) DNA methylation landscapes: Provocative insights from epigenomics. Nat Rev Genet 9:465–76
Tan MP (2010) Analysis of DNA methylation of maize in response to osmotic and salt stress based on methylation-sensitive amplified polymorphism. Plant Physiol Biochem 48:21–6
Tani E, Polidoros AN, Nianiou-Obeidat I, Tsaftaris AS (2005) DNA methylation patterns are differently affected by planting density in maize inbreeds and their hybrids. Maydica 50:19–23
Valencia E, Méndez M, Saavedra N, Maestre FT (2016) Plant size and leaf area influence phenological and reproductive responses to warming in semiarid Mediterranean species. Perspect Plant Ecol Evol Syst 21:31–40
Verhoeven KJF, Jansen JJ, van Dijk PJ, Biere A (2010) Stress-induced DNA methylation changes and their heritability in asexual dandelions. N Phytol 185:1108–18
Vos P, Hogers R, Bleeker M, Reijans M, Van De Lee T, Hornes M et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–14
Wang WS, Pan YJ, Zhao XQ, Dwivedi D, Zhu LH, Ali J et al. (2011) rought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa) L.). J Exp Bot 62:1951–60
Watson RGA, Baldanzi S, Pérez-Figueroa A, Gouws G, Porri F (2018) Morphological and epigenetic variation in mussels from contrasting environments. Mar Biol 165:50
Westoby M (1998) A Leaf-Height-Seed (LHS) plant ecology strategy scheme. Plant Soil 199:213–227
Whittington HR, Tilman D, Wragg PD, Powers JS, Browning DM (2015) Phenological responses of prairie plants vary among species and year in a three-year experimental warming study. Ecosphere 6:1–15
Wolkovich EM, Cleland EE (2014) Phenological niches and the future of invaded ecosystems with climate change. AoB Plants 6:plu013
Wright IJ, Reich PB, Westoby M, Ackerly DD, Baruch Z, Bongers F et al. (2004) The worldwide leaf economics spectrum. Nature 428:821–7
Zhang Y-Y, Parepa M, Fischer M, Bossdorf O (2016) Epigenetics of colonizing species? A study of japanese knotweed in central Europe. In: Barrett SC., Colautti RI, Dlugosch KM, Rieseberg LH (eds) Invasion genetics: the baker and Stebbins legacy, John Wiley & Sons, Ltd, pp 328–340
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SWL, Chen H et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 126:1189–201
Zhu JK (2016) Abiotic stress signaling and responses in plants. Cell 167:313–24
Source: Ecology - nature.com