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We found high variability in traits across the tested 31 fungi covering 11 orders from three different phyla (Fig. 1A, Fig. S2–S6, Table S1 and S2). The colony radial growth rate (Kr) varied from 9.2 to 250.2 µm·h−1 with the fastest growing strains found in phylum Mucoromycota (Fig. S2). The enzyme profiles showed that Lac activity was […] More
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An ecological modeling framework The classical generalized Lotka−Volterra (GLV) model has been used in several ecological modeling works of host-associated microbial communities65,66,67. In this work, we also use it to simulate the FMT process (see “Methods”). In particular, we model the gut microbiota of different hosts as different local communities assembled from a global species […] More
Data We decided to build our own dataset instead of using existing datasets (e.g. Fish4Knowledge: https://groups.inf.ed.ac.uk/f4k/), to be in phase with quality of videos currently used by marine ecologists. We used 3 independent fish images datasets from the Mayotte Island (Western Indian Ocean) to train and test our CNN model and our post processing method. […] More
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