Aurelia Butler

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    School of Architecture and Planning welcomes new faculty for 2025

    Four new faculty members join the School of Architecture and Planning (SA+P) this fall, offering the MIT community creativity, knowledge, and scholarship in multidisciplinary roles.“These individuals add considerable strength and depth to our faculty,” says Hashim Sarkis, dean of the School of Architecture and Planning. “We are excited for the academic vigor they bring to research and teaching.”Karrie G. Karahalios ’94, MEng ’95, SM ’97, PhD ’04 joins the MIT Media Lab as a full professor of media arts and sciences. Karahalios is a pioneer in the exploration of social media and of how people communicate in environments that are increasingly mediated by algorithms that, as she has written, “shape the world around us.” Her work combines computing, systems, artificial intelligence, anthropology, sociology, psychology, game theory, design, and infrastructure studies. Karahalios’ work has received numerous honors including the National Science Foundation CAREER Award, Alfred P. Sloan Research Fellowship, SIGMOD Best Paper Award, and recognition as an ACM Distinguished Member.Pat Pataranutaporn SM ’18, PhD ’20 joins the MIT Media Lab as an assistant professor of media arts and sciences. A visionary technologist, scientist, and designer, Pataranutaporn explores the frontier of human-AI interaction, inventing and investigating AI systems that support human thriving. His research focuses on how personalized AI systems can amplify human cognition, from learning and decision-making to self-development, reflection, and well-being. Pataranutaporn will co-direct the Advancing Humans with AI Program.Mariana Popescu joins the Department of Architecture as an assistant professor. Popescu is a computational architect and structural designer with a strong interest and experience in innovative ways of approaching the fabrication process and use of materials in construction. Her area of expertise is computational and parametric design, with a focus on digital fabrication and sustainable design. Her extensive involvement in projects related to promoting sustainability has led to a multilateral development of skills, which combine the fields of architecture, engineering, computational design, and digital fabrication. Popescu earned her doctorate at ETH Zurich. She was named a “Pioneer” on the MIT Technology Review global list of “35 innovators under 35” in 2019.Holly Samuelson joins the Department of Architecture as an associate professor in the Building Technology Program at MIT, teaching architectural technology courses. Her teaching and research focus on issues of building design that impact human and environmental health. Her current projects harness advanced building simulation to investigate issues of greenhouse gas emissions, heat vulnerability, and indoor environmental quality while considering the future of buildings in a changing electricity grid. Samuelson has co-authored over 40 peer-reviewed papers, winning a best paper award from the journal Energy and Building. As a recognized expert in architectural technology, she has been featured in news outlets including The Washington Post, The Boston Globe, the BBC, and The Wall Street Journal. Samuelson earned her doctor of design from Harvard University Graduate School of Design. More

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    in Security

    Creeping crystals: Scientists observe “salt creep” at the single-crystal scale

    Salt creeping, a phenomenon that occurs in both natural and industrial processes, describes the collection and migration of salt crystals from evaporating solutions onto surfaces. Once they start collecting, the crystals climb, spreading away from the solution. This creeping behavior, according to researchers, can cause damage or be harnessed for good, depending on the context. New research published June 30 in the journal Langmuir is the first to show salt creeping at a single-crystal scale and beneath a liquid’s meniscus.“The work not only explains how salt creeping begins, but why it begins and when it does,” says Joseph Phelim Mooney, a postdoc in the MIT Device Research Laboratory and one of the authors of the new study. “We hope this level of insight helps others, whether they’re tackling water scarcity, preserving ancient murals, or designing longer-lasting infrastructure.”The work is the first to directly visualize how salt crystals grow and interact with surfaces underneath a liquid meniscus, something that’s been theorized for decades but never actually imaged or confirmed at this level, and it offers fundamental insights that could impact a wide range of fields — from mineral extraction and desalination to anti-fouling coatings, membrane design for separation science, and even art conservation, where salt damage is a major threat to heritage materials.In civil engineering applications, for example, the research can help explain why and when salt crystals start growing across surfaces like concrete, stone, or building materials. “These crystals can exert pressure and cause cracking or flaking, reducing the long-term durability of structures,” says Mooney. “By pinpointing the moment when salt begins to creep, engineers can better design protective coatings or drainage systems to prevent this form of degradation.”For a field like art conservation, where salt can be devastating to murals, frescoes, and ancient artifacts, often forming beneath the surface before visible damage appears, the work can help identify the exact conditions that cause salt to start moving and spreading, allowing conservators to act earlier and more precisely to protect heritage objects.The work began during Mooney’s Marie Curie Fellowship at MIT. “I was focused on improving desalination systems and quickly ran into [salt buildup as] a major roadblock,” he says. “[Salt] was everywhere, coating surfaces, clogging flow paths, and undermining the efficiency of our designs. I realized we didn’t fully understand how or why salt starts creeping across surfaces in the first place.”That experience led Mooney to team up with colleagues to dig into the fundamentals of salt crystallization at the air–liquid–solid interface. “We wanted to zoom in, to really see the moment salt begins to move, so we turned to in situ X-ray microscopy,” he says. “What we found gave us a whole new way to think about surface fouling, material degradation, and controlled crystallization.”The new research may, in fact, allow better control of a crystallization processes required to remove salt from water in zero-liquid discharge systems. It can also be used to explain how and when scaling happens on equipment surfaces, and may support emerging climate technologies that depend on smart control of evaporation and crystallization.The work also supports mineral and salt extraction applications, where salt creeping can be both a bottleneck and an opportunity. In these applications, Mooney says, “by understanding the precise physics of salt formation at surfaces, operators can optimize crystal growth, improving recovery rates and reducing material losses.”Mooney’s co-authors on the paper include fellow MIT Device Lab researchers Omer Refet Caylan, Bachir El Fil (now an associate professor at Georgia Tech), and Lenan Zhang (now an associate professor at Cornell University); Jeff Punch and Vanessa Egan of the University of Limerick; and Jintong Gao of Cornell.The research was conducted using in situ X-ray microscopy. Mooney says the team’s big realization moment occurred when they were able to observe a single salt crystal pinning itself to the surface, which kicked off a cascading chain reaction of growth.“People had speculated about this, but we captured it on X-ray for the first time. It felt like watching the microscopic moment where everything tips, the ignition points of a self-propagating process,” says Mooney. “Even more surprising was what followed: The salt crystal didn’t just grow passively to fill the available space. It pierced through the liquid-air interface and reshaped the meniscus itself, setting up the perfect conditions for the next crystal. That subtle, recursive mechanism had never been visually documented before — and seeing it play out in real time completely changed how we thought about salt crystallization.”The paper, “In Situ X-ray Microscopy Unraveling the Onset of Salt Creeping at a Single-Crystal Level,” is available now in the journal Langmuir. Research was conducted in MIT.nano.  More

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    Why animals are a critical part of forest carbon absorption

    A lot of attention has been paid to how climate change can drive biodiversity loss. Now, MIT researchers have shown the reverse is also true: Reductions in biodiversity can jeopardize one of Earth’s most powerful levers for mitigating climate change.In a paper published in PNAS, the researchers showed that following deforestation, naturally-regrowing tropical forests, with healthy populations of seed-dispersing animals, can absorb up to four times more carbon than similar forests with fewer seed-dispersing animals.Because tropical forests are currently Earth’s largest land-based carbon sink, the findings improve our understanding of a potent tool to fight climate change.“The results underscore the importance of animals in maintaining healthy, carbon-rich tropical forests,” says Evan Fricke, a research scientist in the MIT Department of Civil and Environmental Engineering and the lead author of the new study. “When seed-dispersing animals decline, we risk weakening the climate-mitigating power of tropical forests.”Fricke’s co-authors on the paper include César Terrer, the Tianfu Career Development Associate Professor at MIT; Charles Harvey, an MIT professor of civil and environmental engineering; and Susan Cook-Patton of The Nature Conservancy.The study combines a wide array of data on animal biodiversity, movement, and seed dispersal across thousands of animal species, along with carbon accumulation data from thousands of tropical forest sites.The researchers say the results are the clearest evidence yet that seed-dispersing animals play an important role in forests’ ability to absorb carbon, and that the findings underscore the need to address biodiversity loss and climate change as connected parts of a delicate ecosystem rather as separate problems in isolation.“It’s been clear that climate change threatens biodiversity, and now this study shows how biodiversity losses can exacerbate climate change,” Fricke says. “Understanding that two-way street helps us understand the connections between these challenges, and how we can address them. These are challenges we need to tackle in tandem, and the contribution of animals to tropical forest carbon shows that there are win-wins possible when supporting biodiversity and fighting climate change at the same time.”Putting the pieces togetherThe next time you see a video of a monkey or bird enjoying a piece of fruit, consider that the animals are actually playing an important role in their ecosystems. Research has shown that by digesting the seeds and defecating somewhere else, animals can help with the germination, growth, and long-term survival of the plant.Fricke has been studying animals that disperse seeds for nearly 15 years. His previous research has shown that without animal seed dispersal, trees have lower survival rates and a harder time keeping up with environmental changes.“We’re now thinking more about the roles that animals might play in affecting the climate through seed dispersal,” Fricke says. “We know that in tropical forests, where more than three-quarters of trees rely on animals for seed dispersal, the decline of seed dispersal could affect not just the biodiversity of forests, but how they bounce back from deforestation. We also know that all around the world, animal populations are declining.”Regrowing forests is an often-cited way to mitigate the effects of climate change, but the influence of biodiversity on forests’ ability to absorb carbon has not been fully quantified, especially at larger scales.For their study, the researchers combined data from thousands of separate studies and used new tools for quantifying disparate but interconnected ecological processes. After analyzing data from more than 17,000 vegetation plots, the researchers decided to focus on tropical regions, looking at data on where seed-dispersing animals live, how many seeds each animal disperses, and how they affect germination.The researchers then incorporated data showing how human activity impacts different seed-dispersing animals’ presence and movement. They found, for example, that animals move less when they consume seeds in areas with a bigger human footprint.Combining all that data, the researchers created an index of seed-dispersal disruption that revealed a link between human activities and declines in animal seed dispersal. They then analyzed the relationship between that index and records of carbon accumulation in naturally regrowing tropical forests over time, controlling for factors like drought conditions, the prevalence of fires, and the presence of grazing livestock.“It was a big task to bring data from thousands of field studies together into a map of the disruption of seed dispersal,” Fricke says. “But it lets us go beyond just asking what animals are there to actually quantifying the ecological roles those animals are playing and understanding how human pressures affect them.”The researchers acknowledged that the quality of animal biodiversity data could be improved and introduces uncertainty into their findings. They also note that other processes, such as pollination, seed predation, and competition influence seed dispersal and can constrain forest regrowth. Still, the findings were in line with recent estimates.“What’s particularly new about this study is we’re actually getting the numbers around these effects,” Fricke says. “Finding that seed dispersal disruption explains a fourfold difference in carbon absorption across the thousands of tropical regrowth sites included in the study points to seed dispersers as a major lever on tropical forest carbon.”Quantifying lost carbonIn forests identified as potential regrowth sites, the researchers found seed-dispersal declines were linked to reductions in carbon absorption each year averaging 1.8 metric tons per hectare, equal to a reduction in regrowth of 57 percent.The researchers say the results show natural regrowth projects will be more impactful in landscapes where seed-dispersing animals have been less disrupted, including areas that were recently deforested, are near high-integrity forests, or have higher tree cover.“In the discussion around planting trees versus allowing trees to regrow naturally, regrowth is basically free, whereas planting trees costs money, and it also leads to less diverse forests,” Terrer says. “With these results, now we can understand where natural regrowth can happen effectively because there are animals planting the seeds for free, and we also can identify areas where, because animals are affected, natural regrowth is not going to happen, and therefore planting trees actively is necessary.”To support seed-dispersing animals, the researchers encourage interventions that protect or improve their habitats and that reduce pressures on species, ranging from wildlife corridors to restrictions on wildlife trade. Restoring the ecological roles of seed dispersers is also possible by reintroducing seed-dispersing species where they’ve been lost or planting certain trees that attract those animals.The findings could also make modeling the climate impact of naturally regrowing forests more accurate.“Overlooking the impact of seed-dispersal disruption may overestimate natural regrowth potential in many areas and underestimate it in others,” the authors write.The researchers believe the findings open up new avenues of inquiry for the field.“Forests provide a huge climate subsidy by sequestering about a third of all human carbon emissions,” Terrer says. “Tropical forests are by far the most important carbon sink globally, but in the last few decades, their ability to sequester carbon has been declining. We will next explore how much of that decline is due to an increase in extreme droughts or fires versus declines in animal seed dispersal.”Overall, the researchers hope the study helps improves our understanding of the planet’s complex ecological processes.“When we lose our animals, we’re losing the ecological infrastructure that keeps our tropical forests healthy and resilient,” Fricke says.The research was supported by the MIT Climate and Sustainability Consortium, the Government of Portugal, and the Bezos Earth Fund. More

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    Study shows a link between obesity and what’s on local restaurant menus

    For many years, health experts have been concerned about “food deserts,” places where residents lack good nutritional options. Now, an MIT-led study of three major global cities uses a new, granular method to examine the issue, and concludes that having fewer and less nutritional eating options nearby correlates with obesity and other health outcomes.Rather than just mapping geographic areas, the researchers examined the dietary value of millions of food items on roughly 30,000 restaurant menus and derived a more precise assessment of the connection between neighborhoods and nutrition.“We show that what is sold in a restaurant has a direct correlation to people’s health,” says MIT researcher Fabio Duarte, co-author of a newly published paper outlining the study’s results. “The food landscape matters.”The open-access paper, “Data-driven nutritional assessment of urban food landscapes: insights from Boston, London, Dubai,” was published this week in Nature: Scientific Reports.The co-authors are Michael Tufano, a PhD student at Wageningen University, in the Netherlands; Duarte, associate director of MIT’s Senseable City Lab, which uses data to study cities as dynamic systems; Martina Mazzarello, a postdoc at the Senseable City Lab; Javad Eshtiyagh, a research fellow at the Senseable City Lab; Carlo Ratti, professor of the practice and director of the Senseable City Lab; and Guido Camps, a senior researcher at Wageningen University.Scanning the menuTo conduct the study, the researchers examined menus from Boston, Dubai, and London, in the summer of 2023, compiling a database of millions of items available through popular food-delivery platforms. The team then evaluated the food items as rated by the USDA’s FoodData Central database, an information bank with 375,000 kinds of food products listed. The study deployed two main metrics, the Meal Balance Index, and the Nutrient-Rich Foods Index.The researchers examined about 222,000 menu items from over 2,000 restaurants in Boston, about 1.6 million menu items from roughly 9,000 restaurants in Dubai, and about 3.1 million menu items from about 18,000 restaurants in London. In Boston, about 71 percent of the items were in the USDA database; in Dubai and London, that figure was 42 percent and 56 percent, respectively.The team then rated the nutritional value of the items appearing on menus, and correlated the food data with health-outcome data from Boston and London. In London, they found a clear correlation between neighborhood menu offerings and obesity, or the lack thereof; with a slightly less firm correlation in Boston. Areas with food options that include a lot of dietary fibers, sometimes along with fruits and vegetables, tend to have better health data.In Dubai, the researchers did not have the same types of health data available but did observe a strong correlation between rental prices and the nutritional value of neighborhood-level food, suggesting that wealthier residents have better nourishment options.“At the item level, when we have less nutritional food, we see more cases of obsesity,” Tufano says. “It’s true that not only do we have more fast food in poor neighborhoods, but the nutritional value is not the same.”Re-mapping the food landscapeBy conducting the study in this fashion, the scholars added a layer of analysis to past studies of food deserts. While past work has broken ground by identifying neighborhoods and areas lacking good food access, this research makes a more comprehensive assessment of what people consume. The research moves toward evaluating the complex mix of food available in any given area, which can be true even of areas with more limited options.“We were not satisfied with this idea that if you only have fast food, it’s a food desert, but if you have a Whole Foods, it’s not,” Duarte says. “It’s not necessarily like that.”For the Senseable City Lab researchers, the study is a new technique further enabling them to understand city dynamics and the effects of the urban environment on health. Past lab studies have often focused on issues such as urban mobility, while extending to matters such as mobility and air pollution, among other topics.Being able to study food and health at the neighborhood level, though, is still another example of the ways that data-rich spheres of life can be studied in close detail.“When we started working on cities and data, the data resolution was so low,” Ratti says. “Today the amount of data is so immense we see this great opportunity to look at cities and see the influence of the urban environment as a big determinant of health. We see this as one of the new frontiers of our lab. It’s amazing how we can now look at this very precisely in cities.” More

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    Designing across cultural and geographic divides

    In addition to the typical rigors of MIT classes, Terrascope Subject 2.00C/1.016/EC.746 (Design for Complex Environmental Issues) poses some unusual hurdles for students to navigate: collaborating across time zones, bridging different cultural and institutional experiences, and trying to do hands-on work over Zoom. That’s because the class includes students from not only MIT, but also Diné College in Tsaile, Arizona, within the Navajo Nation, and the University of Puerto Rico-Ponce (UPRP).Despite being thousands of miles apart, students work in teams to tackle a real-world problem for a client, based on the Terrascope theme for the year. “Understanding how to collaborate over long distances with people who are not like themselves will be an important item in many of these students’ toolbelts going forward, in some cases just as much as — or more than — any particular design technique,” says Ari Epstein, Terrascope associate director and senior lecturer. Over the past several years, Epstein has taught the class along with Joel Grimm of MIT Beaver Works and Libby Hsu of MIT D-Lab, as well instructors from the two collaborating institutions. Undergraduate teaching fellows from all three schools are also key members of the instructional staff.Since the partnership began three years ago (initially with Diné College, with the addition of UPRP two years ago), the class themes have included food security and sustainable agriculture in Navajo Nation; access to reliable electrical power in Puerto Rico; and this year, increasing museum visitors’ engagement with artworks depicting mining and landscape alteration in Nevada.Each team — which includes students from all three colleges — meets with clients online early in the term to understand their needs; then, through an iterative process, teams work on designing prototypes. During MIT’s spring break, teams travel to meet with the clients onsite to get feedback and continue to refine their prototypes. At the end of the term, students present their final products to the clients, an expert panel, and their communities at a hybrid showcase event held simultaneously on all three campuses.Free-range design engineering“I really loved the class,” says Graciela Leon, a second-year mechanical engineering major who took the subject in 2024. “It was not at all what I was expecting,” she adds. While the learning objectives on the syllabus are fairly traditional — using an iterative engineering design process, developing teamwork skills, and deepening communication skills, to name a few — the approach is not. “Terrascope is just kind of like throwing you into a real-world problem … it feels a lot more like you are being trusted with this actual challenge,” Leon says.The 2024 challenge was to find a way to help the clients, Puerto Rican senior citizens, turn on gasoline-powered generators when the electrical power grid fails; some of them struggle with the pull cords necessary to start the generators. The students were tasked with designing solutions to make starting the generators easier.Terrascope instructors teach fundamental skills such as iterative design spirals and scrum workflow frameworks, but they also give students ample freedom to follow their ideas. Leon admits she was a bit frustrated at first, because she wasn’t sure what she was supposed to be doing. “I wanted to be building things and thought, ‘Wow, I have to do all these other things, I have to write some kind of client profile and understand my client’s needs.’ I was just like, ‘Hand me a drill! I want to design something!’”When he took the class last year, Uziel Rodriguez-Andujar was also thrown off initially by the independence teams had. Now a second-year UPRP student in mechanical engineering, he’s accustomed to lecture-based classes. “What I found so interesting is the way [they] teach the class, which is, ‘You make your own project, and we need you to find a solution to this. How it will look, and when you have it — that’s up to you,’” he says.Clearing hurdlesTeaching the course on three different campuses introduces a number of challenges for students and instructors to overcome — among them, operating in three different time zones, overcoming language barriers, navigating different cultural and institutional norms, communicating effectively, and designing and building prototypes over Zoom.“The culture span is huge,” explains Epstein. “There are different ways of speaking, different ways of listening, and each organization has different resources.”First-year MIT student EJ Rodriguez found that one of the biggest obstacles was trying to convey ideas to teammates clearly. He took the class this year, when the theme revolved around the environmental impacts of lithium mining. The client, the Nevada Museum of Art, wanted to find ways to engage visitors with its artwork collection related to mining-related landscape changes.Rodriguez and his team designed a pendulum with a light affixed to it that illuminates a painting by a Native American artist. When the pendulum swings, it changes how the visitor experiences the artwork. The team built parts for the pendulum on different campuses, and they reached a point where they realized their pieces were incompatible. “We had different visions of what we wanted for the project, and different vocabulary we were using to describe our ideas. Sometimes there would be a misunderstanding … It required a lot of honesty from each campus to be like, ‘OK, I thought we were doing exactly this,’ and obviously in a really respectful way.”It’s not uncommon for students at Diné College and UPRP to experience an initial hurdle that their MIT peers do not. Epstein notes, “There’s a tendency for some folks outside MIT to see MIT students as these brilliant people that they don’t belong in the same room with.” But the other students soon realize not only that they can hold their own intellectually, but also that their backgrounds and experiences are incredibly valuable. “Their life experiences actually put them way ahead of many MIT students in some ways, when you think about design and fabrication, like repairing farm equipment or rebuilding transmissions,” he adds.That’s how Cauy Bia felt when he took the class in 2024. Currently a first-year graduate student in biology at Diné College, Bia questioned whether he’d be on par with the MIT students. “I’ve grown up on a farm, and we do a lot of building, a lot of calculations, a lot of hands-on stuff. But going into this, I was sweating it so hard [wondering], ‘Am I smart enough to work with these students?’ And then, at the end of the day, that was never an issue,” he says.The value of reflectionEvery two weeks, Terrascope students write personal reflections about their experiences in the class, which helps them appreciate their academic and personal development. “I really felt that I had undergone a process that made me grow as an engineer,” says Leon. “I understood the importance of people and engineering more, including teamwork, working with clients, and de-centering the project away from what I wanted to build and design.”When Bia began the semester, he says, he was more of a “make-or-break-type person” and tended to see things in black and white. “But working with all three campuses, it kind of opened up my thought process so I can assess more ideas, more voices and opinions. And I can get broader perspectives and get bigger ideas from that point,” he says. It was also a powerful experience culturally for him, particularly “drawing parallels between Navajo history, Navajo culture, and seeing the similarities between that and Puerto Rican culture, seeing how close we are as two nations.”Rodriguez-Andujar gained an appreciation for the “constant struggle between simplicity and complexity” in engineering. “You have all these engineers trying to over-engineer everything,” he says. “And after you get your client feedback [halfway through the semester], it turns out, ‘Oh, that doesn’t work for me. I’m sorry — you have to scale it down like a hundred times and make it a lot simpler.’”For instructors, the students’ reflections are invaluable as they strive to make improvements every year. In many ways, you might say the class is an iterative design spiral, too. “The past three years have themselves been prototypes,” Epstein says, “and all of the instructional staff are looking forward to continuing these exciting partnerships.” More

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    MIT chemists boost the efficiency of a key enzyme in photosynthesis

    During photosynthesis, an enzyme called rubisco catalyzes a key reaction — the incorporation of carbon dioxide into organic compounds to create sugars. However, rubisco, which is believed to be the most abundant enzyme on Earth, is very inefficient compared to the other enzymes involved in photosynthesis.MIT chemists have now shown that they can greatly enhance a version of rubisco found in bacteria from a low-oxygen environment. Using a process known as directed evolution, they identified mutations that could boost rubisco’s catalytic efficiency by up to 25 percent.The researchers now plan to apply their technique to forms of rubisco that could be used in plants to help boost their rates of photosynthesis, which could potentially improve crop yields.“This is, I think, a compelling demonstration of successful improvement of a rubisco’s enzymatic properties, holding out a lot of hope for engineering other forms of rubisco,” says Matthew Shoulders, the Class of 1942 Professor of Chemistry at MIT.Shoulders and Robert Wilson, a research scientist in the Department of Chemistry, are the senior authors of the new study, which appears this week in the Proceedings of the National Academy of Sciences. MIT graduate student Julie McDonald is the paper’s lead author.Evolution of efficiencyWhen plants or photosynthetic bacteria absorb energy from the sun, they first convert it into energy-storing molecules such as ATP. In the next phase of photosynthesis, cells use that energy to transform a molecule known as ribulose bisphosphate into glucose, which requires several additional reactions. Rubisco catalyzes the first of those reactions, known as carboxylation. During that reaction, carbon from CO2 is added to ribulose bisphosphate.Compared to the other enzymes involved in photosynthesis, rubisco is very slow, catalyzing only one to 10 reactions per second. Additionally, rubisco can also interact with oxygen, leading to a competing reaction that incorporates oxygen instead of carbon — a process that wastes some of the energy absorbed from sunlight.“For protein engineers, that’s a really attractive set of problems because those traits seem like things that you could hopefully make better by making changes to the enzyme’s amino acid sequence,” McDonald says.Previous research has led to improvement in rubisco’s stability and solubility, which resulted in small gains in enzyme efficiency. Most of those studies used directed evolution — a technique in which a naturally occurring protein is randomly mutated and then screened for the emergence of new, desirable features.This process is usually done using error-prone PCR, a technique that first generates mutations in vitro (outside of the cell), typically introducing only one or two mutations in the target gene. In past studies on rubisco, this library of mutations was then introduced into bacteria that grow at a rate relative to rubisco activity. Limitations in error-prone PCR and in the efficiency of introducing new genes restrict the total number of mutations that can be generated and screened using this approach. Manual mutagenesis and selection steps also add more time to the process over multiple rounds of evolution.The MIT team instead used a newer mutagenesis technique that the Shoulders Lab previously developed, called MutaT7. This technique allows the researchers to perform both mutagenesis and screening in living cells, which dramatically speeds up the process. Their technique also enables them to mutate the target gene at a higher rate.“Our continuous directed evolution technique allows you to look at a lot more mutations in the enzyme than has been done in the past,” McDonald says.Better rubiscoFor this study, the researchers began with a version of rubisco, isolated from a family of semi-anaerobic bacteria known as Gallionellaceae, that is one of the fastest rubisco found in nature. During the directed evolution experiments, which were conducted in E. coli, the researchers kept the microbes in an environment with atmospheric levels of oxygen, creating evolutionary pressure to adapt to oxygen.After six rounds of directed evolution, the researchers identified three different mutations that improved the rubisco’s resistance to oxygen. Each of these mutations are located near the enzyme’s active site (where it performs carboxylation or oxygenation). The researchers believe that these mutations improve the enzyme’s ability to preferentially interact with carbon dioxide over oxygen, which leads to an overall increase in carboxylation efficiency.“The underlying question here is: Can you alter and improve the kinetic properties of rubisco to operate better in environments where you want it to operate better?” Shoulders says. “What changed through the directed evolution process was that rubisco began to like to react with oxygen less. That allows this rubisco to function well in an oxygen-rich environment, where normally it would constantly get distracted and react with oxygen, which you don’t want it to do.”In ongoing work, the researchers are applying this approach to other forms of rubisco, including rubisco from plants. Plants are believed to lose about 30 percent of the energy from the sunlight they absorb through a process called photorespiration, which occurs when rubisco acts on oxygen instead of carbon dioxide.“This really opens the door to a lot of exciting new research, and it’s a step beyond the types of engineering that have dominated rubisco engineering in the past,” Wilson says. “There are definite benefits to agricultural productivity that could be leveraged through a better rubisco.”The research was funded, in part, by the National Science Foundation, the National Institutes of Health, an Abdul Latif Jameel Water and Food Systems Lab Grand Challenge grant, and a Martin Family Society Fellowship for Sustainability. More

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    Study shows how a common fertilizer ingredient benefits plants

    Lanthanides are a class of rare earth elements that in many countries are added to fertilizer as micronutrients to stimulate plant growth. But little is known about how they are absorbed by plants or influence photosynthesis, potentially leaving their benefits untapped.Now, researchers from MIT have shed light on how lanthanides move through and operate within plants. These insights could help farmers optimize their use to grow some of the world’s most popular crops.Published today in the Journal of the American Chemical Society, the study shows that a single nanoscale dose of lanthanides applied to seeds can make some of the world’s most common crops more resilient to UV stress. The researchers also uncovered the chemical processes by which lanthanides interact with the chlorophyll pigments that drive photosynthesis, showing that different lanthanide elements strengthen chlorophyll by replacing the magnesium at its center.“This is a first step to better understand how these elements work in plants, and to provide an example of how they could be better delivered to plants, compared to simply applying them in the soil,” says Associate Professor Benedetto Marelli, who conducted the research with postdoc Giorgio Rizzo. “This is the first example of a thorough study showing the effects of lanthanides on chlorophyll, and their beneficial effects to protect plants from UV stress.”Inside plant connectionsCertain lanthanides are used as contrast agents in MRI and for applications including light-emitting diodes, solar cells, and lasers. Over the last 50 years, lanthanides have become increasingly used in agriculture to enhance crop yields, with China alone applying lanthanide-based fertilizers to nearly 4 million hectares of land each year.“Lanthanides have been considered for a long time to be biologically irrelevant, but that’s changed in agriculture, especially in China,” says Rizzo, the paper’s first author. “But we largely don’t know how lanthanides work to benefit plants — nor do we understand their uptake mechanisms from plant tissues.”Recent studies have shown that low concentrations of lanthanides can promote plant growth, root elongation, hormone synthesis, and stress tolerance, but higher doses can cause harm to plants. Striking the right balance has been hard because of our lack of understanding around how lanthanides are absorbed by plants or how they interact with root soil.For the study, the researchers leveraged seed coating and treatment technologies they previously developed to investigate the way the plant pigment chlorophyll interacts with lanthanides, both inside and outside of plants. Up until now, researchers haven’t been sure whether chlorophyll interacts with lanthanide ions at all.Chlorophyll drives photosynthesis, but the pigments lose their ability to efficiently absorb light when the magnesium ion at their core is removed. The researchers discovered that lanthanides can fill that void, helping chlorophyll pigments partially recover some of their optical properties in a process known as re-greening.“We found that lanthanides can boost several parameters of plant health,” Marelli says. “They mostly accumulate in the roots, but a small amount also makes its way to the leaves, and some of the new chlorophyll molecules made in leaves have lanthanides incorporated in their structure.”This study also offers the first experimental evidence that lanthanides can increase plant resilience to UV stress, something the researchers say was completely unexpected.“Chlorophylls are very sensitive pigments,” Rizzo says. “They can convert light to energy in plants, but when they are isolated from the cell structure, they rapidly hydrolyze and degrade. However, in the form with lanthanides at their center, they are pretty stable, even after extracting them from plant cells.”The researchers, using different spectroscopic techniques, found the benefits held across a range of staple crops, including chickpea, barley, corn, and soybeans.The findings could be used to boost crop yield and increase the resilience of some of the world’s most popular crops to extreme weather.“As we move into an environment where extreme heat and extreme climate events are more common, and particularly where we can have prolonged periods of sun in the field, we want to provide new ways to protect our plants,” Marelli says. “There are existing agrochemicals that can be applied to leaves for protecting plants from stressors such as UV, but they can be toxic, increase microplastics, and can require multiple applications. This could be a complementary way to protect plants from UV stress.”Identifying new applicationsThe researchers also found that larger lanthanide elements like lanthanum were more effective at strengthening chlorophyll pigments than smaller ones. Lanthanum is considered a low-value byproduct of rare earths mining, and can become a burden to the rare earth element (REE) supply chain due to the need to separate it from more desirable rare earths. Increasing the demand for lanthanum could diversify the economics of REEs and improve the stability of their supply chain, the scientists suggest.“This study shows what we could do with these lower-value metals,” Marelli says. “We know lanthanides are extremely useful in electronics, magnets, and energy. In the U.S., there’s a big push to recycle them. That’s why for the plant studies, we focused on lanthanum, being the most abundant, cheapest lanthanide ion.”Moving forward, the team plans to explore how lanthanides work with other biological molecules, including proteins in the human body.In agriculture, the team hopes to scale up its research to include field and greenhouse studies to continue testing the results of UV resilience on different crop types and in experimental farm conditions.“Lanthanides are already widely used in agriculture,” Rizzo says. “We hope this study provides evidence that allows more conscious use of them and also a new way to apply them through seed treatments.”The research was supported by the MIT Climate Grand Challenge and the Office for Naval Research. More

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    MIT Open Learning bootcamp supports effort to bring invention for long-term fentanyl recovery to market

    Evan Kharasch, professor of anesthesiology and vice chair for innovation at Duke University, has developed two approaches that may aid in fentanyl addiction recovery. After attending MIT’s Substance Use Disorders (SUD) Ventures Bootcamp, he’s committed to bringing them to market.Illicit fentanyl addiction is still a national emergency in the United States, fueled by years of opioid misuse. As opioid prescriptions fell by 50 percent over 15 years, many turned to street drugs. Among those drugs, fentanyl stands out for its potency — just 2 milligrams can be fatal — and its low production cost. Often mixed with other drugs, it contributed to a large portion of over 80,000 overdose deaths in 2024. It has been particularly challenging to treat with currently available medications for opioid use disorder.  ​​As an anesthesiologist, Kharasch is highly experienced with opioids, including methadone, one of only three drugs approved in the United States for treating opioid use disorder. Methadone is a key option for managing fentanyl use. It’s employed to transition patients off fentanyl and to support ongoing maintenance, but access is limited, with only 20 percent of eligible patients receiving it. Initiating and adjusting methadone treatment can take weeks due to its clinical characteristics, often causing withdrawal and requiring longer hospital stays. Maintenance demands daily visits to one of just over 2,000 clinics, disrupting work or study and leading most patients to drop out after a few months.To tackle these challenges, Kharasch developed two novel methadone formulations: one for faster absorption to cut initiation time from weeks to days — or even hours — and one to slow elimination, thereby potentially requiring only weekly, rather than daily, dosing. As a clinician, scientist, and entrepreneur, he sees the science as demanding, but bringing these treatments to patients presents an even greater challenge. Kharasch learned about the SUD Ventures Bootcamp, part of MIT Open Learning, as a recipient of research funding from the National Institute on Drug Abuse (NIDA). He decided to apply to bridge the gap in his expertise and was selected to attend as a fellow.Each year, the SUD Ventures Bootcamp unites innovators — including scientists, entrepreneurs, and medical professionals — to develop bold, cross-disciplinary solutions to substance use disorders. Through online learning and an intensive one-week in-person bootcamp, teams tackle challenges in different “high priority” areas. Guided by experts in science, entrepreneurship, and policy, they build and pitch ventures aimed at real-world impact. Beyond the multidisciplinary curriculum, the program connects people deeply committed to this space and equipped to drive progress.Throughout the program, Kharasch’s concepts were validated by the invited industry experts, who highlighted the potential impact of a longer-acting methadone formulation, particularly in correctional settings. Encouragement from MIT professors, coaches, and peers energized Kharasch to fully pursue commercialization. He has already begun securing intellectual property rights, validating the regulatory pathway through the U.S Food and Drug Administration, and gathering market and patient feedback.The SUD Ventures Bootcamp, he says, both activated and validated his passion for bringing these innovations to patients. “After many years of basic, translational and clinical research on methadone all — supported by NIDA — I experienced that a ha moment of recognizing a potential opportunity to apply the findings to benefit patients at scale,” Kharasch says. “The NIDA-sponsored participation in the MIT SUD Ventures Bootcamp was the critical catalyst which ignited the inspiration and commitment to pursue commercializing our research findings into better treatments for opioid use disorder.”As next steps, Kharasch is seeking an experienced co-founder and finalizing IP protections. He remains engaged with the SUD Ventures network as mentors, industry experts, and peers offer help with advancing this needed solution to market. For example, the program’s mentor, Nat Sims, the Newbower/Eitan Endowed Chair in Biomedical Technology Innovation at Massachusetts General Hospital (MGH) and a fellow anesthesiologist, has helped Kharasch arrange technology validation conversations within the MGH ecosystem and the drug development community.“Evan’s collaboration with the MGH ecosystem can help define an optimum process for commercializing these innovations — identifying who would benefit, how they would benefit, and who is willing to pilot the product once it’s available,” says Sims.Kharasch has also presented his project in the program’s webinar series. Looking ahead, Kharasch hopes to involve MIT Sloan School of Management students in advancing his project through health care entrepreneurship classes, continuing the momentum that began with the SUD Ventures Bootcamp.The program and its research are supported by the NIDA of the National Institutes of Health. Cynthia Breazeal, a professor of media arts and sciences at the MIT Media Lab and dean for digital learning at MIT Open Learning, serves as the principal investigator on the grant. More