Aurelia Butler

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    in Environment

    Nanograins make for a seismic shift

    In Earth’s crust, tectonic blocks slide and grind past each other like enormous ships loosed from anchor. Earthquakes are generated along these fault zones when enough stress builds for a block to stick, then suddenly slip.

    These slips can be aided by several factors that reduce friction within a fault zone, such as hotter temperatures or pressurized gases that can separate blocks like pucks on an air-hockey table. The decreasing friction enables one tectonic block to accelerate against the other until it runs out of energy. Seismologists have long believed this kind of frictional instability can explain how all crustal earthquakes start. But that might not be the whole story.

    In a study published today in Nature Communications, scientists Hongyu Sun and Matej Pec, from MIT’s Department of Earth, Atmospheric and Planetary Sciences (EAPS), find that ultra-fine-grained crystals within fault zones can behave like low-viscosity fluids. The finding offers an alternative explanation for the instability that leads to crustal earthquakes. It also suggests a link between quakes in the crust and other types of temblors that occur deep in the Earth.

    Nanograins are commonly found in rocks from seismic environments along the smooth surface of “fault mirrors.” These polished, reflective rock faces betray the slipping, sliding forces of past earthquakes. However, it was unclear whether the crystals caused quakes or were merely formed by them.

    To better characterize how these crystals behaved within a fault, the researchers used a planetary ball milling machine to pulverize granite rocks into particles resembling those found in nature. Like a super-powered washing machine filled with ceramic balls, the machine pounded the rock until all its crystals were about 100 nanometers in width, each grain 1/2,000 the size of an average grain of sand.

    After packing the nanopowder into postage-stamp sized cylinders jacketed in gold, the researchers then subjected the material to stresses and heat, creating laboratory miniatures of real fault zones. This process enabled them to isolate the effect of the crystals from the complexity of other factors involved in an actual earthquake.

    The researchers report that the crystals were extremely weak when shearing was initiated — an order of magnitude weaker than more common microcrystals. But the nanocrystals became significantly stronger when the deformation rate was accelerated. Pec, professor of geophysics and the Victor P. Starr Career Development Chair, compares this characteristic, called “rate-strengthening,” to stirring honey in a jar. Stirring the honey slowly is easy, but becomes more difficult the faster you stir.

    The experiment suggests something similar happens in fault zones. As tectonic blocks accelerate past each other, the crystals gum things up between them like honey stirred in a seismic pot.

    Sun, the study’s lead author and EAPS graduate student, explains that their finding runs counter to the dominant frictional weakening theory of how earthquakes start. That theory would predict surfaces of a fault zone have material that gets weaker as the fault block accelerates, and friction should be decreasing. The nanocrystals did just the opposite. However, the crystals’ intrinsic weakness could mean that when enough of them accumulate within a fault, they can give way, causing an earthquake.

    “We don’t totally disagree with the old theorem, but our study really opens new doors to explain the mechanisms of how earthquakes happen in the crust,” Sun says.

    The finding also suggests a previously unrecognized link between earthquakes in the crust and the earthquakes that rumble hundreds of kilometers beneath the surface, where the same tectonic dynamics aren’t at play. That deep, there are no tectonic blocks to grind against each other, and even if there were, the immense pressure would prevent the type of quakes observed in the crust that necessitate some dilatancy and void creation.

    “We know that earthquakes happen all the way down to really big depths where this motion along a frictional fault is basically impossible,” says Pec. “And so clearly, there must be different processes that allow for these earthquakes to happen.”

    Possible mechanisms for these deep-Earth tremors include “phase transitions” which occur due to atomic re-arrangement in minerals and are accompanied by a volume change, and other kinds of metamorphic reactions, such as dehydration of water-bearing minerals, in which the released fluid is pumped through pores and destabilizes a fault. These mechanisms are all characterized by a weak, rate-strengthening layer.

    If weak, rate-strengthening nanocrystals are abundant in the deep Earth, they could present another possible mechanism, says Pec. “Maybe crustal earthquakes are not a completely different beast than the deeper earthquakes. Maybe they have something in common.” More

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    J-WAFS launches Food and Climate Systems Transformation Alliance

    Food systems around the world are increasingly at risk from the impacts of climate change. At the same time, these systems, which include all activities from food production to consumption and food waste, are responsible for about one-third of the human-caused greenhouse gas emissions warming the planet. 

    To drive research-based innovation that will make food systems more resilient and sustainable, MIT’s Abdul Latif Jameel Water and Food Systems Lab (J-WAFS) announced the launch of a new initiative at an event during the UN Climate Change Conference in Glasgow, Scotland, last week. The initiative, called the Food and Climate Systems Transformation (FACT) Alliance, will better connect researchers to farmers, food businesses, policymakers, and other food systems stakeholders around the world. 

    “Time is not on our side,” says Greg Sixt, the director of the FACT Alliance and research manager for food and climate systems at J-WAFS. “To date, the research community hasn’t delivered actionable solutions quickly enough or in the policy-relevant form needed if time-critical changes are to be made to our food systems. The FACT Alliance aims to change this.”

    Why, in fact, do our food systems need transformation?

    At COP26 (which stands for “conference of the parties” to the UN Framework Convention on Climate Change, being held for the 26th time this year), a number of countries have pledged to end deforestation, reduce methane emissions, and cease public financing of coal power. In his keynote address at the FACT Alliance event, Professor Pete Smith of the University of Aberdeen, an alliance member institution, noted that food and agriculture also need to be addressed because “there’s an interaction between climate change and the food system.” 

    The UN Intergovernmental Panel on Climate Change warns that a two-degree Celsius increase in average global temperature over preindustrial levels could trigger a worldwide food crisis, and emissions from food systems alone could push us past the two-degree mark even if energy-related emissions could be zeroed out. 

    Smith said dramatic and rapid transformations are needed to deliver safe, nutritious food for all, with reduced environmental impact and increased resilience to climate change. With a global network of leading research institutions and collaborating stakeholder organizations, the FACT Alliance aims to facilitate new, solutions-oriented research for addressing the most challenging aspects of food systems in the era of climate change. 

    How the FACT Alliance works

    Central to the work of the FACT Alliance is the development of new methodologies for aligning data across scales and food systems components, improving data access, integrating research across the diverse disciplines that address aspects of food systems, making stakeholders partners in the research process, and assessing impact in the context of complex and interconnected food and climate systems. 

    The FACT Alliance will conduct what’s known as “convergence research,” which meets complex problems with approaches that embody deep integration across disciplines. This kind of research calls for close association with the stakeholders who both make decisions and are directly affected by how food systems work, be they farmers, extension services (i.e., agricultural advisories), policymakers, international aid organizations, consumers, or others. By inviting stakeholders and collaborators to be part of the research process, the FACT Alliance allows for engagement at the scale, geography, and scope that is most relevant to the needs of each, integrating global and local teams to achieve better outcomes. 

    “Doing research in isolation of all the stakeholders and in isolation of the goals that we want to achieve will not deliver the transformation that we need,” said Smith. “The problem is too big for us to solve in isolation, and we need broad alliances to tackle the issue, and that’s why we developed the FACT Alliance.” 

    Members and collaborators

    Led by MIT’s J-WAFS, the FACT Alliance is currently made up of 16 core members and an associated network of collaborating stakeholder organizations. 

    “As the central convener of MIT research on food systems, J-WAFS catalyzes collaboration across disciplines,” says Maria Zuber, vice president for research at MIT. “Now, by bringing together a world-class group of research institutions and stakeholders from key sectors, the FACT Alliance aims to advance research that will help alleviate climate impacts on food systems and mitigate food system impacts on climate.”

    J-WAFS co-hosted the COP26 event “Bridging the Science-Policy Gap for Impactful, Demand-Driven Food Systems Innovation” with Columbia University, the American University of Beirut, and the CGIAR research program Climate Change, Agriculture and Food Security (CCAFS). The event featured a panel discussion with several FACT Alliance members and the UK Foreign, Commonwealth and Development Office (FCDO). More

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    in Security

    Q&A: Options for the Diablo Canyon nuclear plant

    The Diablo Canyon nuclear plant in California, the only one still operating in the state, is set to close in 2025. A team of researchers at MIT’s Center for Advanced Nuclear Energy Systems, Abdul Latif Jameel Water and Food Systems Lab, and Center for Energy and Environmental Policy Research; Stanford’s Precourt Energy Institute; and energy analysis firm LucidCatalyst LLC have analyzed the potential benefits the plant could provide if its operation were extended to 2030 or 2045.

    They found that this nuclear plant could simultaneously help to stabilize the state’s electric grid, provide desalinated water to supplement the state’s chronic water shortages, and provide carbon-free hydrogen fuel for transportation. MIT News asked report co-authors Jacopo Buongiorno, the TEPCO Professor of Nuclear Science and Engineering, and John Lienhard, the Jameel Professor of Water and Food, to discuss the group’s findings.

    Q: Your report suggests co-locating a major desalination plant alongside the existing Diablo Canyon power plant. What would be the potential benefits from operating a desalination plant in conjunction with the power plant?

    Lienhard: The cost of desalinated water produced at Diablo Canyon would be lower than for a stand-alone plant because the cost of electricity would be significantly lower and you could take advantage of the existing infrastructure for the intake of seawater and the outfall of brine. Electricity would be cheaper because the location takes advantage of Diablo Canyon’s unique capability to provide low cost, zero-carbon baseload power.

    Depending on the scale at which the desalination plant is built, you could make a very significant impact on the water shortfalls of state and federal projects in the area. In fact, one of the numbers that came out of this study was that an intermediate-sized desalination plant there would produce more fresh water than the highest estimate of the net yield from the proposed Delta Conveyance Project on the Sacramento River. You could get that amount of water at Diablo Canyon for an investment cost less than half as large, and without the associated impacts that would come with the Delta Conveyance Project.

    And the technology envisioned for desalination here, reverse osmosis, is available off the shelf. You can buy this equipment today. In fact, it’s already in use in California and thousands of other places around the world.

    Q: You discuss in the report three potential products from the Diablo Canyon plant:  desalinatinated water, power for the grid, and clean hydrogen. How well can the plant accommodate all of those efforts, and are there advantages to combining them as opposed to doing any one of them separately?

    Buongiorno: California, like many other regions in the world, is facing multiple challenges as it seeks to reduce carbon emissions on a grand scale. First, the wide deployment of intermittent energy sources such as solar and wind creates a great deal of variability on the grid that can be balanced by dispatchable firm power generators like Diablo. So, the first mission for Diablo is to continue to provide reliable, clean electricity to the grid.

    The second challenge is the prolonged drought and water scarcity for the state in general. And one way to address that is water desalination co-located with the nuclear plant at the Diablo site, as John explained.

    The third challenge is related to decarbonization the transportation sector. A possible approach is replacing conventional cars and trucks with vehicles powered by fuel cells which consume hydrogen. Hydrogen has to be produced from a primary energy source. Nuclear power, through a process called electrolysis, can do that quite efficiently and in a manner that is carbon-free.

    Our economic analysis took into account the expected revenue from selling these multiple products — electricity for the grid, hydrogen for the transportation sector, water for farmers or other local users — as well as the costs associated with deploying the new facilities needed to produce desalinated water and hydrogen. We found that, if Diablo’s operating license was extended until 2035, it would cut carbon emissions by an average of 7 million metric tons a year — a more than 11 percent reduction from 2017 levels — and save ratepayers $2.6 billion in power system costs.

    Further delaying the retirement of Diablo to 2045 would spare 90,000 acres of land that would need to be dedicated to renewable energy production to replace the facility’s capacity, and it would save ratepayers up to $21 billion in power system costs.

    Finally, if Diablo was operated as a polygeneration facility that provides electricity, desalinated water, and hydrogen simultaneously, its value, quantified in terms of dollars per unit electricity generated, could increase by 50 percent.

    Lienhard: Most of the desalination scenarios that we considered did not consume the full electrical output of that plant, meaning that under most scenarios you would continue to make electricity and do something with it, beyond just desalination. I think it’s also important to remember that this power plant produces 15 percent of California’s carbon-free electricity today and is responsible for 8 percent of the state’s total electrical production. In other words, Diablo Canyon is a very large factor in California’s decarbonization. When or if this plant goes offline, the near-term outcome is likely to be increased reliance on natural gas to produce electricity, meaning a rise in California’s carbon emissions.

    Q: This plant in particular has been highly controversial since its inception. What’s your assessment of the plant’s safety beyond its scheduled shutdown, and how do you see this report as contributing to the decision-making about that shutdown?

    Buongiorno: The Diablo Canyon Nuclear Power Plant has a very strong safety record. The potential safety concern for Diablo is related to its proximity to several fault lines. Being located in California, the plant was designed to withstand large earthquakes to begin with. Following the Fukushima accident in 2011, the Nuclear Regulatory Commission reviewed the plant’s ability to withstand external events (e.g., earthquakes, tsunamis, floods, tornadoes, wildfires, hurricanes) of exceptionally rare and severe magnitude. After nine years of assessment the NRC’s conclusion is that “existing seismic capacity or effective flood protection [at Diablo Canyon] will address the unbounded reevaluated hazards.” That is, Diablo was designed and built to withstand even the rarest and strongest earthquakes that are physically possible at this site.

    As an additional level of protection, the plant has been retrofitted with special equipment and procedures meant to ensure reliable cooling of the reactor core and spent fuel pool under a hypothetical scenario in which all design-basis safety systems have been disabled by a severe external event.

    Lienhard: As for the potential impact of this report, PG&E [the California utility] has already made the decision to shut down the plant, and we and others hope that decision will be revisited and reversed. We believe that this report gives the relevant stakeholders and policymakers a lot of information about options and value associated with keeping the plant running, and about how California could benefit from clean water and clean power generated at Diablo Canyon. It’s not up to us to make the decision, of course — that is a decision that must be made by the people of California. All we can do is provide information.

    Q: What are the biggest challenges or obstacles to seeing these ideas implemented?

    Lienhard: California has very strict environmental protection regulations, and it’s good that they do. One of the areas of great concern to California is the health of the ocean and protection of the coastal ecosystem. As a result, very strict rules are in place about the intake and outfall of both power plants and desalination plants, to protect marine life. Our analysis suggests that this combined plant can be implemented within the parameters prescribed by the California Ocean Plan and that it can meet the regulatory requirements.

    We believe that deeper analysis would be needed before you could proceed. You would need to do site studies and really get out into the water and look in detail at what’s there. But the preliminary analysis is positive. A second challenge is that the discourse in California around nuclear power has generally not been very supportive, and similarly some groups in California oppose desalination. We expect that that both of those points of view would be part of the conversation about whether or not to procede with this project.

    Q: How particular is this analysis to the specifics of this location? Are there aspects of it that apply to other nuclear plants, domestically or globally?

    Lienhard: Hundreds of nuclear plants around the world are situated along the coast, and many are in water stressed regions. Although our analysis focused on Diablo Canyon, we believe that the general findings are applicable to many other seaside nuclear plants, so that this approach and these conclusions could potentially be applied at hundreds of sites worldwide. More

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    Scientists project increased risk to water supplies in South Africa this century

    In 2018, Cape Town, South Africa’s second most populous city, came very close to running out of water as the multi-year “Day Zero” drought depleted its reservoirs. Since then, researchers from Stanford University determined that climate change had made this extreme drought five to six times more likely, and warned that a lot more Day Zero events could occur in regions with similar climates in the future. A better understanding of likely surface air temperature and precipitation trends in South Africa and other dry, populated areas around the world in the coming decades could empower decision-makers to pursue science-based climate mitigation and adaptation measures designed to reduce the risk of future Day Zero events.    

    Toward that end, researchers at the MIT Joint Program on the Science and Policy of Global Change, International Food Policy Research Institute, and CGIAR have produced modeled projections of 21st-century changes in seasonal surface air temperature and precipitation for South Africa that systematically and comprehensively account for uncertainties in how Earth and socioeconomic systems behave and co-evolve. Presented in a study in the journal Climatic Change, these projections show how temperature and precipitation over three sub-national regions — western, central, and eastern South Africa — are likely to change under a wide range of global climate mitigation policy scenarios.

    In a business-as-usual global climate policy scenario in which no emissions or climate targets are set or met, the projections show that for all three regions, there’s a greater-than 50 percent likelihood that mid-century temperatures will increase threefold over the current climate’s range of variability. But the risk of these mid-century temperature increases is effectively eliminated through more aggressive climate targets.

    The business-as-usual projections indicate that the risk of decreased precipitation levels in western and central South Africa is three to four times higher than the risk of increased precipitation levels. Under a global climate mitigation policy designed to cap global warming at 1.5 degrees Celsius by 2100, the risk of precipitation changes within South Africa toward the end of the century (2065-74) is similar to the risk during the 2030s in the business-as-usual scenario.

    Rising risks of substantially reduced precipitation levels throughout this century under a business-as-usual scenario suggest increased reliance and stress on the widespread water-efficiency measures established in the aftermath of the Day Zero drought. But a 1.5 C global climate mitigation policy would delay these risks by 30 years, giving South Africa ample lead time to prepare for and adapt to them.

    “Our analysis provides risk-based evidence on the benefits of climate mitigation policies as well as unavoidable climate impacts that will need to be addressed through adaptive measures,” says MIT Joint Program Deputy Director C. Adam Schlosser, the lead author of the study. “Global action to limit human-induced warming could give South Africa enough time to secure sufficient water supplies to sustain its population. Otherwise, anticipated climate shifts by the middle of the next decade may well make Day-Zero situations more common.”

    This study is part of an ongoing effort to assess the risks that climate change poses for South Africa’s agricultural, economic, energy and infrastructure sectors. More

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    MIT collaborates with Biogen on three-year, $7 million initiative to address climate, health, and equity

    MIT and Biogen have announced that they will collaborate with the goal to accelerate the science and action on climate change to improve human health. This collaboration is supported by a three-year, $7 million commitment from the company and the Biogen Foundation. The biotechnology company, headquartered in Cambridge, Massachusetts’ Kendall Square, discovers and develops therapies for people living with serious neurological diseases.

    “We have long believed it is imperative for Biogen to make the fight against climate change central to our long-term corporate responsibility commitments. Through this collaboration with MIT, we aim to identify and share innovative climate solutions that will deliver co-benefits for both health and equity,” says Michel Vounatsos, CEO of Biogen. “We are also proud to support the MIT Museum, which promises to make world-class science and education accessible to all, and honor Biogen co-founder Phillip A. Sharp with a dedication inside the museum that recognizes his contributions to its development.”

    Biogen and the Biogen Foundation are supporting research and programs across a range of areas at MIT.

    Advancing climate, health, and equity

    The first such effort involves new work within the MIT Joint Program on the Science and Policy of Global Change to establish a state-of-the-art integrated model of climate and health aimed at identifying targets that deliver climate and health co-benefits.

    “Evidence suggests that not all climate-related actions deliver equal health benefits, yet policymakers, planners, and stakeholders traditionally lack the tools to consider how decisions in one arena impact the other,” says C. Adam Schlosser, deputy director of the MIT Joint Program. “Biogen’s collaboration with the MIT Joint Program — and its support of a new distinguished Biogen Fellow who will develop the new climate/health model — will accelerate our efforts to provide decision-makers with these tools.”

    Biogen is also supporting the MIT Technology and Policy Program’s Research to Policy Engagement Initiative to infuse human health as a key new consideration in decision-making on the best pathways forward to address the global climate crisis, and bridge the knowledge-to-action gap by connecting policymakers, researchers, and diverse stakeholders. As part of this work, Biogen is underwriting a distinguished Biogen Fellow to advance new research on climate, health, and equity.

    “Our work with Biogen has allowed us to make progress on key questions that matter to human health and well-being under climate change,” says Noelle Eckley Selin, who directs the MIT Technology and Policy Program and is a professor in the MIT Institute for Data, Systems, and Society and the Department of Earth, Atmospheric and Planetary Sciences. “Further, their support of the Research to Policy Engagement Initiative helps all of our research become more effective in making change.”

    In addition, Biogen has joined 13 other companies in the MIT Climate and Sustainability Consortium (MCSC), which is supporting faculty and student research and developing impact pathways that present a range of actionable steps that companies can take — within and across industries — to advance progress toward climate targets.

    “Biogen joining the MIT Climate and Sustainability Consortium represents our commitment to working with member companies across a diverse range of industries, an approach that aims to drive changes swift and broad enough to match the scale of the climate challenge,” says Jeremy Gregory, executive director of the MCSC. “We are excited to welcome a member from the biotechnology space and look forward to harnessing Biogen’s perspectives as we continue to collaborate and work together with the MIT community in exciting and meaningful ways.”

    Making world-class science and education available to MIT Museum visitors

    Support from Biogen will honor Nobel laureate, MIT Institute professor, and Biogen co-founder Phillip A. Sharp with a named space inside the new Kendall Square location of the MIT Museum, set to open in spring 2022. Biogen also is supporting one of the museum’s opening exhibitions, “Essential MIT,” with a section focused on solving real-world problems such as climate change. It is also providing programmatic support for the museum’s Life Sciences Maker Engagement Program.

    “Phil has provided fantastic support to the MIT Museum for more than a decade as an advisory board member and now as board chair, and he has been deeply involved in plans for the new museum at Kendall Square,” says John Durant, the Mark R. Epstein (Class of 1963) Director of the museum. “Seeing his name on the wall will be a constant reminder of his key role in this development, as well as a mark of our gratitude.”

    Inspiring and empowering the next generation of scientists

    Biogen funding is also being directed to engage the next generation of scientists through support for the Biogen-MIT Biotech in Action: Virtual Lab, a program designed to foster a love of science among diverse and under-served student populations.

    Biogen’s support is part of its Healthy Climate, Healthy Lives initiative, a $250 million, 20-year commitment to eliminate fossil fuels across its operations and collaborate with renowned institutions to advance the science of climate and health and support under-served communities. Additional support is provided by the Biogen Foundation to further its long-standing focus on providing students with equitable access to outstanding science education. More

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    in Security

    Saving seaweed with machine learning

    Last year, Charlene Xia ’17, SM ’20 found herself at a crossroads. She was finishing up her master’s degree in media arts and sciences from the MIT Media Lab and had just submitted applications to doctoral degree programs. All Xia could do was sit and wait. In the meantime, she narrowed down her career options, regardless of whether she was accepted to any program.

    “I had two thoughts: I’m either going to get a PhD to work on a project that protects our planet, or I’m going to start a restaurant,” recalls Xia.

    Xia poured over her extensive cookbook collection, researching international cuisines as she anxiously awaited word about her graduate school applications. She even looked into the cost of a food truck permit in the Boston area. Just as she started hatching plans to open a plant-based skewer restaurant, Xia received word that she had been accepted into the mechanical engineering graduate program at MIT.

    Shortly after starting her doctoral studies, Xia’s advisor, Professor David Wallace, approached her with an interesting opportunity. MathWorks, a software company known for developing the MATLAB computing platform, had announced a new seed funding program in MIT’s Department of Mechanical Engineering. The program encouraged collaborative research projects focused on the health of the planet.

    “I saw this as a super-fun opportunity to combine my passion for food, my technical expertise in ocean engineering, and my interest in sustainably helping our planet,” says Xia.

    Play video

    From MIT Mechanical Engineering: “Saving Seaweed with Machine Learning”

    Wallace knew Xia would be up to the task of taking an interdisciplinary approach to solve an issue related to the health of the planet. “Charlene is a remarkable student with extraordinary talent and deep thoughtfulness. She is pretty much fearless, embracing challenges in almost any domain with the well-founded belief that, with effort, she will become a master,” says Wallace.

    Alongside Wallace and Associate Professor Stefanie Mueller, Xia proposed a project to predict and prevent the spread of diseases in aquaculture. The team focused on seaweed farms in particular.

    Already popular in East Asian cuisines, seaweed holds tremendous potential as a sustainable food source for the world’s ever-growing population. In addition to its nutritive value, seaweed combats various environmental threats. It helps fight climate change by absorbing excess carbon dioxide in the atmosphere, and can also absorb fertilizer run-off, keeping coasts cleaner.

    As with so much of marine life, seaweed is threatened by the very thing it helps mitigate against: climate change. Climate stressors like warm temperatures or minimal sunlight encourage the growth of harmful bacteria such as ice-ice disease. Within days, entire seaweed farms are decimated by unchecked bacterial growth.

    To solve this problem, Xia turned to the microbiota present in these seaweed farms as a predictive indicator of any threat to the seaweed or livestock. “Our project is to develop a low-cost device that can detect and prevent diseases before they affect seaweed or livestock by monitoring the microbiome of the environment,” says Xia.

    The team pairs old technology with the latest in computing. Using a submersible digital holographic microscope, they take a 2D image. They then use a machine learning system known as a neural network to convert the 2D image into a representation of the microbiome present in the 3D environment.

    “Using a machine learning network, you can take a 2D image and reconstruct it almost in real time to get an idea of what the microbiome looks like in a 3D space,” says Xia.

    The software can be run in a small Raspberry Pi that could be attached to the holographic microscope. To figure out how to communicate these data back to the research team, Xia drew upon her master’s degree research.

    In that work, under the guidance of Professor Allan Adams and Professor Joseph Paradiso in the Media Lab, Xia focused on developing small underwater communication devices that can relay data about the ocean back to researchers. Rather than the usual $4,000, these devices were designed to cost less than $100, helping lower the cost barrier for those interested in uncovering the many mysteries of our oceans. The communication devices can be used to relay data about the ocean environment from the machine learning algorithms.

    By combining these low-cost communication devices along with microscopic images and machine learning, Xia hopes to design a low-cost, real-time monitoring system that can be scaled to cover entire seaweed farms.

    “It’s almost like having the ‘internet of things’ underwater,” adds Xia. “I’m developing this whole underwater camera system alongside the wireless communication I developed that can give me the data while I’m sitting on dry land.”

    Armed with these data about the microbiome, Xia and her team can detect whether or not a disease is about to strike and jeopardize seaweed or livestock before it is too late.

    While Xia still daydreams about opening a restaurant, she hopes the seaweed project will prompt people to rethink how they consider food production in general.

    “We should think about farming and food production in terms of the entire ecosystem,” she says. “My meta-goal for this project would be to get people to think about food production in a more holistic and natural way.” More

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    How diet affects tumors

    In recent years, there has been some evidence that dietary interventions can help to slow the growth of tumors. A new study from MIT, which analyzed two different diets in mice, reveals how those diets affect cancer cells, and offers an explanation for why restricting calories may slow tumor growth.

    The study examined the effects of a calorically restricted diet and a ketogenic diet in mice with pancreatic tumors. While both of these diets reduce the amount of sugar available to tumors, the researchers found that only the calorically restricted diet reduced the availability of fatty acids, and this was linked to a slowdown in tumor growth.

    The findings do not suggest that cancer patients should try to follow either of these diets, the researchers say. Instead, they believe the findings warrant further study to determine how dietary interventions might be combined with existing or emerging drugs to help patients with cancer.

    “There’s a lot of evidence that diet can affect how fast your cancer progresses, but this is not a cure,” says Matthew Vander Heiden, director of MIT’s Koch Institute for Integrative Cancer Research and the senior author of the study. “While the findings are provocative, further study is needed, and individual patients should talk to their doctor about the right dietary interventions for their cancer.”

    MIT postdoc Evan Lien is the lead author of the paper, which appears today in Nature.

    Metabolic mechanism

    Vander Heiden, who is also a medical oncologist at Dana-Farber Cancer Institute, says his patients often ask him about the potential benefits of various diets, but there is not enough scientific evidence available to offer any definitive advice. Many of the dietary questions that patients have focus on either a calorie-restricted diet, which reduces calorie consumption by 25 to 50 percent, or a ketogenic diet, which is low in carbohydrates and high in fat and protein.

    Previous studies have suggested that a calorically restricted diet might slow tumor growth in some contexts, and such a diet has been shown to extend lifespan in mice and many other animal species. A smaller number of studies exploring the effects of a ketogenic diet on cancer have produced inconclusive results.

    “A lot of the advice or cultural fads that are out there aren’t necessarily always based on very good science,” Lien says. “It seemed like there was an opportunity, especially with our understanding of cancer metabolism having evolved so much over the past 10 years or so, that we could take some of the biochemical principles that we’ve learned and apply those concepts to understanding this complex question.”

    Cancer cells consume a great deal of glucose, so some scientists had hypothesized that either the ketogenic diet or calorie restriction might slow tumor growth by reducing the amount of glucose available. However, the MIT team’s initial experiments in mice with pancreatic tumors showed that calorie restriction has a much greater effect on tumor growth than the ketogenic diet, so the researchers suspected that glucose levels were not playing a major role in the slowdown.

    To dig deeper into the mechanism, the researchers analyzed tumor growth and nutrient concentration in mice with pancreatic tumors, which were fed either a normal, ketogenic, or calorie-restricted diet. In both the ketogenic and calorie-restricted mice, glucose levels went down. In the calorie-restricted mice, lipid levels also went down, but in mice on the ketogenic diet, they went up.

    Lipid shortages impair tumor growth because cancer cells need lipids to construct their cell membranes. Normally, when lipids aren’t available in a tissue, cells can make their own. As part of this process, they need to maintain the right balance of saturated and unsaturated fatty acids, which requires an enzyme called stearoyl-CoA desaturase (SCD). This enzyme is responsible for converting saturated fatty acids into unsaturated fatty acids.

    Both calorie-restricted and ketogenic diets reduce SCD activity, but mice on the ketogenic diet had lipids available to them from their diet, so they didn’t need to use SCD. Mice on the calorie-restricted diet, however, couldn’t get fatty acids from their diet or produce their own. In these mice, tumor growth slowed significantly, compared to mice on the ketogenic diet.

    “Not only does caloric restriction starve tumors of lipids, it also impairs the process that allows them to adapt to it. That combination is really contributing to the inhibition of tumor growth,” Lien says.

    Dietary effects

    In addition to their mouse research, the researchers also looked at some human data. Working with Brian Wolpin, an oncologist at Dana-Farber Cancer Institute and an author of the paper, the team obtained data from a large cohort study that allowed them to analyze the relationship between dietary patterns and survival times in pancreatic cancer patients. From that study, the researchers found that the type of fat consumed appears to influence how patients on a low-sugar diet fare after a pancreatic cancer diagnosis, although the data are not complete enough to draw any conclusions about the effect of diet, the researchers say.

    Although this study showed that calorie restriction has beneficial effects in mice, the researchers say they do not recommend that cancer patients follow a calorie-restricted diet, which is difficult to maintain and can have harmful side effects. However, they believe that cancer cells’ dependence on the availability of unsaturated fatty acids could be exploited to develop drugs that might help slow tumor growth.

    One possible therapeutic strategy could be inhibition of the SCD enzyme, which would cut off tumor cells’ ability to produce unsaturated fatty acids.

    “The purpose of these studies isn’t necessarily to recommend a diet, but it’s to really understand the underlying biology,” Lien says. “They provide some sense of the mechanisms of how these diets work, and that can lead to rational ideas on how we might mimic those situations for cancer therapy.”

    The researchers now plan to study how diets with a variety of fat sources — including plant or animal-based fats with defined differences in saturated, monounsaturated, and polyunsaturated fatty acid content — alter tumor fatty acid metabolism and the ratio of unsaturated to saturated fatty acids.

    The research was funded by the Damon Runyon Cancer Research Foundation, the National Institutes of Health, the Lustgarten Foundation, the Dana-Farber Cancer Institute Hale Family Center for Pancreatic Cancer Research, Stand Up to Cancer, the Pancreatic Cancer Action Network, the Noble Effort Fund, the Wexler Family Fund, Promises for Purple, the Bob Parsons Fund, the Emerald Foundation, the Howard Hughes Medical Institute, the MIT Center for Precision Cancer Medicine, and the Ludwig Center at MIT. More

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    How marsh grass protects shorelines

    Marsh plants, which are ubiquitous along the world’s shorelines, can play a major role in mitigating the damage to coastlines as sea levels rise and storm surges increase. Now, a new MIT study provides greater detail about how these protective benefits work under real-world conditions shaped by waves and currents.

    The study combined laboratory experiments using simulated plants in a large wave tank along with mathematical modeling. It appears in the journal Physical Review — Fluids, in a paper by former MIT visiting doctoral student Xiaoxia Zhang, now a postdoc at Dalian University of Technology, and professor of civil and environmental engineering Heidi Nepf.

    It’s already clear that coastal marsh plants provide significant protection from surges and devastating  storms. For example, it has been estimated that the damage caused by Hurricane Sandy was reduced by $625 million thanks to the damping of wave energy provided by extensive areas of marsh along the affected coasts. But the new MIT analysis incorporates details of plant morphology, such as the number and spacing of flexible leaves versus stiffer stems, and the complex interactions of currents and waves that may be coming from different directions.

    This level of detail could enable coastal restoration planners to determine the area of marsh needed to mitigate expected amounts of storm surge or sea-level rise, and to decide which types of plants to introduce to maximize protection.

    “When you go to a marsh, you often will see that the plants are arranged in zones,” says Nepf, who is the Donald and Martha Harleman Professor of Civil and Environmental Engineering. “Along the edge, you tend to have plants that are more flexible, because they are using their flexibility to reduce the wave forces they feel. In the next zone, the plants are a little more rigid and have a bit more leaves.”

    As the zones progress, the plants become stiffer, leafier, and more effective at absorbing wave energy thanks to their greater leaf area. The new modeling done in this research, which incorporated work with simulated plants in the 24-meter-long wave tank at MIT’s Parsons Lab, can enable coastal planners to take these kinds of details into account when planning protection, mitigation, or restoration projects.

    “If you put the stiffest plants at the edge, they might not survive, because they’re feeling very high wave forces. By describing why Mother Nature organizes plants in this way, we can hopefully design a more sustainable restoration,” Nepf says.

    Once established, the marsh plants provide a positive feedback cycle that helps to not only stabilize but also build up these delicate coastal lands, Zhang says. “After a few years, the marsh grasses start to trap and hold the sediment, and the elevation gets higher and higher, which might keep up with sea level rise,” she says.

    The new MIT analysis incorporates details of plant morphology, such as the number and spacing of flexible leaves versus stiffer stems, and the complex interactions of currents and waves that may be coming from different directions.

    Awareness of the protective effects of marshland has been growing, Nepf says. For example, the Netherlands has been restoring lost marshland outside the dikes that surround much of the nation’s agricultural land, finding that the marsh can protect the dikes from erosion; the marsh and dikes work together much more effectively than the dikes alone at preventing flooding.

    But most such efforts so far have been largely empirical, trial-and-error plans, Nepf says. Now, they could take advantage of this modeling to know just how much marshland with what types of plants would be needed to provide the desired level of protection.

    It also provides a more quantitative way to estimate the value provided by marshes, she says. “It could allow you to more accurately say, ‘40 meters of marsh will reduce waves this much and therefore will reduce overtopping of your levee by this much.’ Someone could use that to say, ‘I’m going to save this much money over the next 10 years if I reduce flooding by maintaining this marsh.’ It might help generate some political motivation for restoration efforts.”

    Nepf herself is already trying to get some of these findings included in coastal planning processes. She serves on a practitioner panel led by Chris Esposito of the Water Institute of the Gulf, which serves the storm-battered Louisiana coastline. “We’d like to get this work into the coatal simulations that are used for large-scale restoration and coastal planning,” she says.

    “Understanding the wave damping process in real vegetation wetlands is of critical value, as it is needed in the assessment of the coastal defense value of these wetlands,” says Zhan Hu, an associate professor of marine sciences at Sun Yat-Sen University, who was not associated with this work. “The challenge, however, lies in the quantitative representation of the wave damping process, in which many factors are at play, such as plant flexibility, morphology, and coexisting currents.”

    The new study, Hu says, “neatly combines experimental findings and analytical modeling to reveal the impact of each factor in the wave damping process. … Overall, this work is a solid step forward toward a more accurate assessment of wave damping capacity of real coastal wetlands, which is needed for science-based design and management of nature-based coastal protection.”

    The work was partly supported by the National Science Foundation and the China Scholarship Council.  More