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    When did mammoths go extinct?

    arising from Y. Wang et al. Nature https://doi.org/10.1038/s41586-021-04016-x (2021)A unique challenge for environmental DNA (eDNA)-based palaeoecological reconstructions and extinction estimates is that organisms can contribute DNA to sediments long after their death. Recently, Wang et al.1 discovered mammoth eDNA in sediments that are between approximately 4.6 and 7 thousand years (kyr) younger than the most recent mammoth fossils in North America and Eurasia, which they interpreted as mammoths surviving on both continents into the Middle Holocene epoch. Here we present an alternative explanation for these offsets: the slow decomposition of mammoth tissues on cold Arctic landscapes is responsible for the release of DNA into sediments for thousands of years after mammoths went extinct. eDNA records are important palaeobiological archives, but the mixing of undatable DNA from long-dead organisms into younger sediments complicates the interpretation of eDNA, particularly from cold and high-latitude systems.All animal tissues, including faeces, contribute DNA to eDNA records2, but the durations across which tissues can contribute genetic information must vary depending on tissue type and local rates of destruction and decomposition. On high-latitude landscapes, soft tissues and skeletal remains of large mammals may persist, unburied, for millennia3,4,5. For example, unburied antlers of caribou (Rangifer tarandus) from Svalbard (Norway) and Ellesmere Island (Canada) have been dated3,4 to between 1 and 2 cal kyr bp (calibrated kyr before present). Elephant seal (Mirounga leonina) remains near the Antarctic coastline5,6 can persist for more than 5,000 years. This is in contrast to bones in warmer settings, which persist for only centuries or decades7,8. Because bones are particularly resistant to decay, quantifying how their persistence changes across environments enables us to constrain the durations that dead individuals generally contribute to eDNA archives. To do this, we consolidated data on the oldest radiocarbon-dated surface-collected bones from different ecosystems. We included bones that we are reasonably confident persisted without being completely buried (‘never buried’), and bones for which exhumation cannot be confidently excluded (‘potentially never buried’). Pairing bone persistence with mean annual temperatures (MAT) from their sample localities, we find a strong link between the local temperature and the logged duration of bone persistence (Fig. 1, never buried bones: R2 = 0.94, P  More

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    Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase

    Author notesMikayla M. ClarkPresent address: University of Tennessee, Knoxville, TN, USAMichael W. SneddonPresent address: Predicine, Inc., Hayward, CA, USARoman SutorminPresent address: Google, Inc., San Francisco, CA, USAAuthors and AffiliationsLawrence Berkeley National Laboratory, Berkeley, CA, USADylan Chivian, Sean P. Jungbluth, Paramvir S. Dehal, Elisha M. Wood-Charlson, Richard S. Canon, Gavin A. Price, William J. Riehl, Michael W. Sneddon, Roman Sutormin & Adam P. ArkinOak Ridge National Laboratory, Oak Ridge, TN, USABenjamin H. Allen, Mikayla M. Clark, Miriam L. Land & Robert W. CottinghamArgonne National Laboratory, Lemont, IL, USATianhao Gu, Qizhi Zhang & Chris S. HenryAuthorsDylan ChivianSean P. JungbluthParamvir S. DehalElisha M. Wood-CharlsonRichard S. CanonBenjamin H. AllenMikayla M. ClarkTianhao GuMiriam L. LandGavin A. PriceWilliam J. RiehlMichael W. SneddonRoman SutorminQizhi ZhangRobert W. CottinghamChris S. HenryAdam P. ArkinCorresponding authorsCorrespondence to
    Dylan Chivian or Adam P. Arkin. More

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    Global distribution and climate sensitivity of the tropical montane forest nitrogen cycle

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    Reply to: When did mammoths go extinct?

    Department of Zoology, University of Cambridge, Cambridge, UKYucheng Wang, Bianca De Sanctis, Ruairidh Macleod, Daniel Money & Eske WillerslevLundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, DenmarkYucheng Wang, Ana Prohaska, Jialu Cao, Antonio Fernandez-Guerra, James Haile, Kurt H. Kjær, Thorfinn Sand Korneliussen, Nicolaj Krog Larsen, Ruairidh Macleod, Hugh McColl, Mikkel Winther Pedersen, Fernando Racimo, Alexandra Rouillard, Anthony H. Ruter, Lasse Vinner, David J. Meltzer & Eske WillerslevALPHA, State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research (ITPCAS), Chinese Academy of Sciences (CAS), Beijing, ChinaYucheng WangKey Laboratory of Western China’s Environmental Systems (Ministry of Education), College of Earth and Environmental Science, Lanzhou University, Lanzhou, ChinaHaoran DongGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, FranceAdriana Alberti, France Denoeud & Patrick WinckerInstitute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, FranceAdriana AlbertiThe Arctic University Museum of Norway, UiT—The Arctic University of Norway, Tromsø, NorwayInger Greve Alsos, Eric Coissac, Galina Gusarova, Youri Lammers & Marie Kristine Føreid MerkelDepartment of Geography and Environment, University of Hawaii, Honolulu, HI, USADavid W. BeilmanDepartment of Geosciences and Natural Resource Management, University of Copenhagen, Copenhagen, DenmarkAnders A. BjørkInstitute of Earth Sciences, St Petersburg State University, St Petersburg, RussiaAnna A. Cherezova & Grigory B. FedorovArctic and Antarctic Research Institute, St Petersburg, RussiaAnna A. Cherezova & Grigory B. FedorovUniversité Grenoble-Alpes, Université Savoie Mont Blanc, CNRS, LECA, Grenoble, FranceEric CoissacDepartment of Genetics, University of Cambridge, Cambridge, UKBianca De Sanctis & Richard DurbinCarlsberg Research Laboratory, Copenhagen V, DenmarkChristoph Dockter & Birgitte SkadhaugeSchool of Geography and Environmental Science, University of Southampton, Southampton, UKMary E. EdwardsAlaska Quaternary Center, University of Alaska Fairbanks, Fairbanks, AK, USAMary E. EdwardsSchool of Environment, Earth and Ecosystem Sciences, The Open University, Milton Keynes, UKNeil R. Edwards & Philip B. HoldenCenter for the Environmental Management of Military Lands, Colorado State University, Fort Collins, CO, USAJulie EsdaleDepartment of Earth and Atmospheric Sciences, University of Alberta, Edmonton, Alberta, CanadaDuane G. FroeseFaculty of Biology, St Petersburg State University, St Petersburg, RussiaGalina GusarovaDepartment of Glaciology and Climate, Geological Survey of Denmark and Greenland, Copenhagen K, DenmarkKristian K. KjeldsenDepartment of Earth Science, University of Bergen, Bergen, NorwayJan Mangerud & John Inge SvendsenBjerknes Centre for Climate Research, Bergen, NorwayJan Mangerud & John Inge SvendsenDepartment of Geology, Quaternary Sciences, Lund University, Lund, SwedenPer MöllerCenter for Macroecology, Evolution and Climate, Globe Institute, University of Copenhagen, Copenhagen Ø, DenmarkDavid Nogués-Bravo, Hannah Lois Owens & Carsten RahbekCentre d’Anthropobiologie et de Génomique de Toulouse, Faculté de Médecine Purpane, Université Paul Sabatier, Toulouse, FranceLudovic OrlandoCenter for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, DenmarkHannah Lois Owens & Carsten RahbekGates of the Arctic National Park and Preserve, US National Park Service, Fairbanks, AK, USAJeffrey T. RasicDepartment of Geosciences, UiT—The Arctic University of Norway, Tromsø, NorwayAlexandra RouillardZoological Institute, Russian academy of sciences, St Petersburg, RussiaAlexei TikhonovResource and Environmental Research Center, Chinese Academy of Fishery Sciences, Beijing, ChinaYingchun XingCollege of Plant Science, Jilin University, Changchun, Jilin, ChinaYubin ZhangDepartment of Anthropology, Southern Methodist University, Dallas, TX, USADavid J. MeltzerWellcome Trust Sanger Institute, Wellcome Genome Campus, Cambridge, UKEske WillerslevMARUM, University of Bremen, Bremen, GermanyEske WillerslevAll authors contributed to the conception of the presented ideas. Y.W. and H.D. analysed the data. Y.W., D.J.M., A.P. and E.W. wrote the paper with inputs from all authors. More

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    Features of urban green spaces associated with positive emotions, mindfulness and relaxation

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    Current trends suggest most Asian countries are unlikely to meet future biodiversity targets on protected areas

    Area-based sub-targetWe found that 13.2% of Asian terrestrial landscapes were covered by PAs by the target date for Aichi 11 based on our in-country sources. However, it was 17.4% lower based on WDPA data (10.9%). The average increase in coverage across Asia during the 2010s was 0.4% ± SE 0.1% per year. PA coverage at the level of individual countries increased from a mean 11.1% in 2010 (SE = 1.4%) to 14.1% by 2020 (SE = 1.8%) based on our in-country sources, which was 16.5% higher than WDPA data (12.1 ± SE 1.6%). However, these overall figures concealed considerable country-level and sub-regional heterogeneity.A total of 8,673,433 km2 across 10 countries, equaling 19.6% of Asian terrestrial landscapes was managed as hunting concessions, governed by governments, communities or private sectors, but these areas have not been included in the countries’ report to the Protected Planet Initiative databases. Most of these areas are locally important in terms of biodiversity conservation and local socioeconomic outcomes which may qualify them as examples of “other effective area-based conservation measures” (OECMs). The increase in area-based conservation coverage represented by these areas, above the current Protected Planet Initiative statistic, ranged from 0.2% (Iran) to 41.4% (Russia). With that update incorporated, a total of 32.9% of Asian terrestrial landscapes are under protection, either as protected areas or hunting concessions (potentially as one type of OECMs).We found that 40% of Asian countries met a target of 17% coverage for PAs by 2020 based on our in-country sources, mainly in East and some South Asia, whereas West and Central Asian countries had generally not achieved this target (Figs. 1 and 2). We did not find any statistically significant association between the proportions of highly at-risk (CR/EN) mammalian species range outside PAs and the % PA extent in 2020 (β = −0.22 ± SE 0.15, t = −1.51, P = 0.14 in a Generalized Linear Model). The highest proportions of the highly at-risk (CR/EN) mammalian species range outside PAs were seen in West (βCR/EN_outsidePA = 1.77 ± SE 0.46, t = 3.86, P 10%, but Kuwait lost area. In East Asia, all countries showed at least some PA expansion (South Korea and Japan by >10%) whereas in Central Asia, almost no change was seen. It is also noteworthy that between 2010 and 2015, agricultural lands increased by 2.0% across the continent, averaging 0.51 ± SE 0.03% per year at country level, although 18 counties (45.0%) had agricultural land loss, mainly in West and Central Asia (12 out of 18 countries with agricultural land loss; Fig. 2).In our attempt to model the variation in achievement of area-based target (% PA extent), we found a single model with a ΔAICc weight of 1.0 (R2adj = 0.66; Table 1). There was no evidence to reject the null hypothesis that the model fits well (P = 0.99). This model included the predictors % agricultural extent in 2015, % PA extent in 2010, and sub-region (Table 1). Specifically, the coefficients suggested that countries with greater PA extent in 2010 and a smaller percentage of agricultural lands in 2015 were more likely to achieve higher percentage of PA extent by 2020 (βPAExtent2020 = 0.58 ± SE 0.10, t = 5.74, P  0.05).Table 2 Results of generalized linear models testing different hypotheses on the association between the percentage of ecoregions protected by the PA network in 2020 and ecological and geopolitical factors in Asian countries.Full size tableFor the coverage of highly at-risk (CR/EN) mammalian species, a single statistical model was also selected, with non-significant deviance goodness of fit (P = 0.83), which included only the % PA extent by 2020 and Region as predictors (R2adj = 0. 27). Although there was no evidence for association between the % PA extent by 2020 and the coverage of threatened species (βPAExtent2020 = −0.23 ± SE 0.15, t = −1.57, P = 0.13). However, the coverage of threatened species varied geographically, with high intercept differences for East Asia (βEastAsia = −0.23 ± SE 0.15, t = −1.57, P = 0.13), implying the largest median of range of highly at-risk (CR/EN) mammalian species outside the current network of PAs within each country.PA management effectiveness sub-targetFor the level of PAME assessment, we found that out of 22781 PAs within the 40 studied Asian countries, only 7.0% have been assessed based on PAME criteria (n = 1599), averaging 17.4% ± of PAs per country (SE = 2.5%). Israel, Japan, Lao, Bahrain, Oman and Qatar had no PA assessed based on the PAME criteria while over 1/3 of PAs in Indonesia, Cambodia, Bhutan, Jordan, Nepal, Turkey, Singapore and the UAE were PAME assessed. When modeling the level of PAME assessment, three best supported models were averaged (Table 3), with the averaged model including GDP2019, % PA extent 2020 and the Region as predictors. The averaged model coefficients would be non-significant under a hypothesis-testing approach (βGDP2019 = −0.18 ± SE 0.12, t = 1.47, P = 0.14 and βPAExtent2020 = −0.15 ± SE 0.11, t = 1.31, P = 0.19). Similarly, there was no evidence for the association between the ratio of PAs with PAME and Asian regions (P  > 0.05).Table 3 Results of generalized linear models testing different hypotheses on the association between the ratio of PAs with management effectiveness (PAME) in 2020 and ecological and geopolitical factors in Asian countries.Full size table More

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    Biodiversity loss and climate extremes — study the feedbacks

    As humans warm the planet, biodiversity is plummeting. These two global crises are connected in multiple ways. But the details of the intricate feedback loops between biodiversity decline and climate change are astonishingly under-studied.It is well known that climate extremes such as droughts and heatwaves can have devastating impacts on ecosystems and, in turn, that degraded ecosystems have a reduced capacity to protect humanity against the social and physical impacts of such events. Yet only a few such relationships have been probed in detail. Even less well known is whether biodiversity-depleted ecosystems will also have a negative effect on climate, provoking or exacerbating weather extremes.For us, a group of researchers living and working mainly in Central Europe, the wake-up call was the sequence of heatwaves of 2018, 2019 and 2022. It felt unreal to watch a floodplain forest suffer drought stress in Leipzig, Germany. Across Germany, more than 380,000 hectares of trees have now been damaged (see go.nature.com/3etrrnp; in German), and the forestry sector is struggling with how to plan restoration activities over the coming decades1. What could have protected these ecosystems against such extremes? And how will the resultant damage further impact our climate?
    Nature-based solutions can help cool the planet — if we act now
    In June 2021, the Intergovernmental Panel on Climate Change (IPCC) and the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) published their first joint report2, acknowledging the need for more collaborative work between these two domains. And some good policy moves are afoot: the new EU Forest Strategy for 2030, released in July 2021, and other high-level policy initiatives by the European Commission, formally recognize the multifunctional value of forests, including their role in regulating atmospheric processes and climate. But much more remains to be done.To thoroughly quantify the risk that lies ahead, ecologists, climate scientists, remote-sensing experts, modellers and data scientists need to work together. The upcoming meeting of the United Nations Convention on Biological Diversity in Montreal, Canada, in December is a good opportunity to catalyse such collaboration.Buffers and responsesWhen lamenting the decline in biodiversity, most people think first about the tragedy of species driven to extinction. There are more subtle changes under way, too.For instance, a study across Germany showed that over the past century, most plant species have declined in cover, with only a few increasing in abundance3. Also affected is species functionality4 — genetic diversity, and the diversity of form and structure that can make communities more or less efficient at taking up nutrients, resisting heat or surviving pathogen attacks.When entire ecosystems are transformed, their functionality is often degraded. They are left with less capacity to absorb pollution, store carbon dioxide, soak up water, regulate temperature and support vital functions for other organisms, including humans5. Conversely, higher levels of functional biodiversity increase the odds of an ecosystem coping with unexpected events, including climate extremes. This is known as the insurance effect6.The effect is well documented in field experiments and modelling studies. And there is mounting evidence of it in ecosystem responses to natural events. A global synthesis of various drought conditions showed, for instance, that forests were more resilient when trees with a greater diversity of strategies for using and transporting water lived together7.

    Dead trees near Iserlohn, Germany, in April 2020 (left) and after felling in June 2021 (right).Credit: Ina Fassbender/AFP via Getty

    However, biodiversity cannot protect all ecosystems against all kinds of impacts. In a study this year across plots in the United States and Canada, for example, mortality was shown to be higher in diverse forest ecosystems8. The proposed explanation for this unexpected result was that greater biodiversity could also foster more competition for resources. When extreme events induce stress, resources can become scarce in areas with high biomass and competition can suddenly drive mortality, overwhelming the benefits of cohabitation. Whether or not higher biodiversity protects an ecosystem from an extreme is highly site-specific.Some plants respond to drought by reducing photosynthesis and transpiration immediately; others can maintain business as usual for much longer, stabilizing the response of the ecosystem as a whole. So the exact response of ecosystems to extremes depends on interactions between the type of event, plant strategies, vegetation composition and structure.Which plant strategies will prevail is hard to predict and highly dependent on the duration and severity of the climatic extreme, and on previous extremes9. Researchers cannot fully explain why some forests, tree species or individual plants survive in certain regions hit by extreme climate conditions, whereas entire stands disappear elsewhere10. One study of beech trees in Germany showed that survival chances had a genomic basis11, yet it is not clear whether the genetic variability present in forests will be sufficient to cope with future conditions.And it can take years for ecosystem impacts to play out. The effects of the two consecutive hot drought years, 2018 and 2019, were an eye-opener for many of us. In Leipzig, tree growth declined, pathogens proliferated and ash and maple trees died. The double blow, interrupted by a mild winter, on top of the long-term loss of soil moisture, led to trees dying at 4–20 times the usual rate throughout Germany, depending on the species (see go.nature.com/3etrrnp; in German). The devastation peaked in 2020.Ecosystem changes can also affect atmospheric conditions and climate. Notably, land-use change can alter the brightness (albedo) of the planet’s surface and its capacity for heat exchange. But there are more-complex mechanisms of influence.Vegetation can be a source or sink for atmospheric substances. A study published in 2020 showed that vegetation under stress is less capable of removing ozone than are unstressed plants, leading to higher levels of air pollution12. Pollen and other biogenic particles emitted from certain plants can induce the freezing of supercooled cloud droplets, allowing ice in clouds to form at much warmer temperatures13, with consequences for rainfall14. Changes to species composition and stress can alter the dynamics of these particle emissions. Plant stress also modifies the emission of biogenic volatile organic gases, which can form secondary particles. Wildfires — enhanced by drought and monocultures — affect clouds, weather and climate through the emission of greenhouse gases and smoke particles. Satellite data show that afforestation can boost the formation of low-level, cooling cloud cover15 by enhancing the supply of water to the atmosphere.Research prioritiesAn important question is whether there is a feedback loop: will more intense, and more frequent, extremes accelerate the degradation and homogenization of ecosystems, which then, in turn, promote further climate extremes? So far, we don’t know.One reason for this lack of knowledge is that research has so far been selective: most studies have focused on the impacts of droughts and heatwaves on ecosystems. Relatively little is known about the impacts of other kinds of extremes, such as a ‘false spring’ caused by an early-season bout of warm weather, a late spring frost, heavy rainfall events, ozone maxima, or exposure to high levels of solar radiation during dry, cloudless weather.Researchers have no overview, much less a global catalogue, of how each dimension of biodiversity interacts with the full breadth of climate extremes in different combinations and at multiple scales. In an ideal world, scientists would know, for example, how the variation in canopy density, vegetation age, and species diversity protects against storm damage; and whether and how the diversity of canopy structures controls atmospheric processes such as cloud formation in the wake of extremes. Researchers need to link spatiotemporal patterns of biodiversity with the responses of ecosystem processes to climate extremes.
    Biodiversity needs every tool in the box: use OECMs
    Creating such a catalogue is a huge challenge, particularly given the more frequent occurrence of extremes with little or no precedent16. Scientists will also need to account for the increasing likelihood of pile-ups of climate stressors. The ways in which ecosystems respond to compound events17 could be quite different. Researchers will have to study which facets of biodiversity (genetic, physiological, structural) are required to stabilize ecosystems and their functions against these onslaughts.There is at least one piece of good news: tools for data collection and analysis are improving fast, with huge advances over the past decade in satellite-based observations for both climate and biodiversity monitoring. The European Copernicus Earth-observation programme, for example — which includes the Sentinel 1 and 2 satellite fleet, and other recently launched missions that cover the most important wavelengths of the electromagnetic spectrum — offer metre-scale resolution observations of the biochemical status of plants and canopy structure. Atmospheric states are recorded in unprecedented detail, vertically and in time.Scientists must now make these data interoperable and integrate them with in situ observations. The latter is challenging. On the ground, a new generation of data are being collected by researchers and by citizen scientists18. For example, unique insights into plant responses to stress are coming from time-lapse photography of leaf orientation; accelerometer measures of movement patterns of stems have been shown to provide proxies for the drought stress of trees19.High-quality models are needed to turn these data into predictions. The development of functional ‘digital twins’ of the climate system is now in reach. These models replicate hydrometeorological processes at the metre scale, and are fast enough to allow for rapid scenario development and testing20. The analogous models for ecosystems are still in a more conceptual phase. Artificial-intelligence methods will be key here, to study links between climate extremes and biodiversity.Researchers can no longer afford to track global transformations of the Earth system in disciplinary silos. Instead, ecologists and climate scientists need to establish a joint agenda, so that humanity is properly forewarned: of the risks of removing biodiversity buffers against climate extremes, and of the risk of thereby amplifying these extremes. More

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    Memory for own actions in parrots

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