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    Global dataset of species-specific inland recreational fisheries harvest for consumption

    Arlinghaus, R., Tillner, R. & Bork, M. Explaining participation rates in recreational fishing across industrialised countries. Fisheries Management and Ecology 22, 45–55 (2015).Article 

    Google Scholar 
    Cooke, S. J. & Cowx, I. G. The Role of Recreational Fishing in Global Fish Crises. BioScience 54, 857 (2004).Article 

    Google Scholar 
    World Bank. Hidden harvest: The global contribution of capture fisheries (World Bank, Washington, DC), Report 66469-GLB (2012).Nyboer, E. A. et al. Overturning stereotypes: the fuzzy boundary between recreation and subsistence in inland fisheries. Fish and Fisheries https://doi.org/10.1111/faf.12688 (2022).Article 

    Google Scholar 
    Gupta, N. et al. Catch-and-release angling as a management tool for freshwater fish conservation in India. Oryx 50, 250–256 (2016).Article 

    Google Scholar 
    Bower, S. D. et al. Knowledge Gaps and Management Priorities for Recreational Fisheries in the Developing World. Reviews in Fisheries Science & Aquaculture 1–18, https://doi.org/10.1080/23308249.2020.1770689 (2020).FAO. The State of World Fisheries and Aquaculture – 2016 (SOFIA). Rome, Italy (2016).Golden, C. D. et al. Aquatic foods to nourish nations. Nature https://doi.org/10.1038/s41586-021-03917-1 (2021).Article 
    PubMed 

    Google Scholar 
    Cooke, S. J. et al. The nexus of fun and nutrition: Recreational fishing is also about food. Fish and Fisheries 19, 201–224 (2018).Article 

    Google Scholar 
    Joosse, S., Hensle, L., Boonstra, W. J., Ponzelar, C. & Olsson, J. Fishing in the city for food—a paradigmatic case of sustainability in urban blue space. npj Urban Sustain 1, 41, https://doi.org/10.1038/s42949-021-00043-9 (2021).Article 

    Google Scholar 
    Fluet-Chouinard, E., Funge-Smith, S. & McIntyre, P. B. Global hidden harvest of freshwater fish revealed by household surveys. Proceedings of the National Academy of Sciences 115, 7623–7628 (2018).CAS 
    Article 

    Google Scholar 
    FAO. The State of World Fisheries and Aquaculture – 2020 (SOFIA). Rome, Italy. (2020).IPBES. Global assessment report on biodiversity and ecosystem services of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (Version 1). Zenodo https://doi.org/10.5281/zenodo.3831674 (2019).Arlinghaus, R. et al. Global Participation in and Public Attitudes Toward Recreational Fishing: International Perspectives and Developments. Reviews in Fisheries Science & Aquaculture 29, 58–95 (2021).Article 

    Google Scholar 
    Chan, N. “Large Ocean States”: Sovereignty, Small Islands, and Marine Protected Areas in Global Oceans Governance. Global Governance: A Review of Multilateralism and International Organizations 24, 537–555 (2018).Article 

    Google Scholar 
    Arlinghaus, R. & Cooke, S. J. Recreational Fisheries: Socioeconomic Importance, Conservation Issues and Management Challenges. in Recreational Hunting, Conservation and Rural Livelihoods (eds. Dickson, B., Hutton, J. & Adams, W. M.) 39–58, https://doi.org/10.1002/9781444303179.ch3 (Wiley-Blackwell, 2009).Arlinghaus, R. et al. Opinion: Governing the recreational dimension of global fisheries. Proceedings of the National Academy of Sciences 116, 5209–5213 (2019).CAS 
    Article 

    Google Scholar 
    Cisneros-Montemayor, A. M. & Sumaila, U. R. A global estimate of benefits from ecosystem-based marine recreation: potential impacts and implications for management. Journal of Bioeconomics 12, 245–268 (2010).Article 

    Google Scholar 
    Czarkowski, T., Wołos, A. & Kapusta, A. Socio-economic portrait of Polish anglers and its implications for recreational fisheries management in freshwater bodies. Aquatic Living Resources 19, 14, https://doi.org/10.1051/alr/2021018 (2021).Article 

    Google Scholar 
    Dill, W. A. Inland Fisheries of Europe. Italy: Food and Agriculture Organization of the United Nations. (1993).Baigún, C., Oldani, N., Madirolas, A. & Colombo, G. A. Assessment of Fish Yield in Patagonian Lakes (Argentina): Development and Application of Empirical Models. Transactions of the American Fisheries Society 136, 846–857 (2007).Article 

    Google Scholar 
    Vigliano, P. H., Bechara, J., & Quiros, R. Allocation policies and its implications for recreational fisheries management in inland waters of Argentina. Sharing the Fish ‘06, 210 (2006).Henry, G. W., & Lyle, J. M. National recreational and indigenous fishing survey. (2003).Murphy J. J. et al. Survey of recreational fishing in NSW, 2019/20 – Key Results. Fisheries Final Report Series No. 161. Department of Primary Industries, New South Wales. 180 pp. (2022).Aas, Øystein, ed. Global challenges in recreational fisheries. (John Wiley & Sons, 2008).DoF. Yearbook of Fisheries Statistics of Bangladesh, 2017-18. Fisheries Resources Survey System (FRSS), Department of Fisheries. Bangladesh: Ministry of Fisheries. 35: p. 129 (2018).Mozumder, M., Uddin, M., Schneider, P., Islam, M. & Shamsuzzaman, M. Fisheries-Based Ecotourism in Bangladesh: Potentials and Challenges. Resources 7, 61 (2018).Article 

    Google Scholar 
    Craig, John F., ed. Freshwater fisheries ecology. (John Wiley & Sons, 2016).Barkhuizen, L. M., Weyl, O. L. F. & Van As, J. G. An assessment of recreational bank angling in the Free State Province, South Africa, using licence sale and tournament data. WSA 43, 442 (2017).Article 

    Google Scholar 
    Treer, T. & Kubatov, I. The co-existence of recreational and artisanal fisheries in the central parts of the Danube and Sava rivers. Croatian Journal of Fisheries 75(3), 116–127 (2017).
    Google Scholar 
    Freire, K. M. F., Machado, M. L. & Crepaldi, D. Overview of Inland Recreational Fisheries in Brazil. Fisheries 37, 484–494 (2012).Article 

    Google Scholar 
    Freire, K. M. F. et al. Brazilian recreational fisheries: current status, challenges and future direction. Fish Manag Ecol 23, 276–290, https://doi.org/10.1111/fme.12171 (2016).Article 

    Google Scholar 
    Fisheries and Oceans Canada. Survey of Recreational Fishing in Canada, 2015. 26 (2019).Arismendi, I. & Nahuelhual, L. Non-native Salmon and Trout Recreational Fishing in Lake Llanquihue, Southern Chile: Economic Benefits and Management Implications. Reviews in Fisheries Science 15, 311–325 (2007).Article 

    Google Scholar 
    Lyach, R., & Čech, M. Differences in fish harvest, fishing effort, and angling guard activities between urban and natural fishing grounds. Urban Ecosystems, 1–13 (2019).Lyach, R. The effect of fishing effort, fish stocking, and population density of overwintering cormorants on the harvest and recapture rates of three rheophilic fish species in central Europe. Fisheries Research 223, 105440 (2020).Article 

    Google Scholar 
    Lyach, R. The effect of a large-scale angling restriction in minimum angling size on harvest rates, recapture rates, and average body weight of harvested common carps Cyprinus carpio. Fisheries Research 223, 105438 (2020).Article 

    Google Scholar 
    Lyach, R. & Remr, J. Changes in recreational catfish Silurus glanis harvest rates between years 1986–2017 in Central Europe. Journal of Applied Ichthyology 35(5), 1094:1104 (2019).Article 

    Google Scholar 
    Lyach, R. & Remr, J. Does harvest of the European grayling, Thymallus thymallus (Actinopterygii: Salmoniformes: Salmonidae), change over time with different intensity of fish stocking and fishing effort? Acta Ichthyol. Piscat. 50(1), 53–62 (2019).Article 

    Google Scholar 
    Lyach, R. & Remr, J. The effects of environmental factors and fisheries management on recreational catches of perch Perca fluviatilis in the Czech Republic. Aquatic Living Resources 32, 15, https://doi.org/10.1051/alr/2019013 (2019).Article 

    Google Scholar 
    Rasmussen, G. & Geertz‐Hansen, P. Fisheries management in inland and coastal waters in Denmark from 1987 to 1999. Fisheries Management and Ecology 8(4‐5), 311–322 (2001).
    Google Scholar 
    Armulik, T. & Sirp, S. Estonian Fishery 2018. (2019).Welcomme, R. Review of the State of the World Fishery Resources: Inland Fisheries. FAO Fisheries and Aquaculture Circular No. 942, Rev. 2. Rome, FAO. 97 pp. (2011).West Greenland Commission, 2020 Report on the Salmon Fishery in Greenland. 8 (2020).Guðbergsson, G. Catch statistics for Atlantic salmon, Arctic char and brown trout in Icelandic rivers and lakes 2013. Institute of Freshwater Fisheries, Iceland Report VMST/14045 (2014).Inland Fisheries Ireland. Wild Salmon and Sea Trout Statistics Report. IFI/2020/1-4513 (2019).Vycius, J. & Radzevicius, A. Fishery and Fishculture Challenges in Lithuania. International Journal of Water Resources Development 25(1), 81–94, https://doi.org/10.1080/07900620802576240 (2009).Article 

    Google Scholar 
    Bacal, P., Jeleapov, A., Burduja, V. D., & Moroz, I. State and use of lakes from central region of the Republic of Moldova. Present Environment and Sustainable Development, (2), 141–156 (2019).Moroccan Ministry of Fisheries, Annual Report of Fisheries and Fish Farming in Inland Waters, Season 2020/2021 (2021).Centre for Fisheries Research. Recreational fisheries in the Netherlands: Analyses of the 2017 screening survey and the 2016–2017 logbook survey. CVO report: 18.025 (2019).Dedual, M. & Rohan, M. Long‐term trends in the catch characteristics of rainbow trout Oncorhynchus mykiss, in a self‐sustained recreational fishery, Tongariro River, New Zealand. Fisheries Management and Ecology 23(3-4), 234–242 (2016).Article 

    Google Scholar 
    Unwin, M.J. Angler usage of New Zealand lake and river fisheries. National Institute of Water and Atmospheric Research (2016).Ipinmoroti, M. O. & Ayanboye, O. Biological and socioeconomic viability of recreational fisheries of two Nigerian lakes. IIFET 2012 Tanzania Proceedings (2012).Amaral, S., Ferreira, M.T., Cravo, M.T. Resultado do ‘Inquérito aos Pescadores Desportivos de Áquas Intenores” realizado pela Direcção Geral das Florestas em 1998 a 1999. Pesca Desportivos em Albufeiras do Centro e Sul de Portugal: Contribuição para a reduçao da eutrofização. Instituto Superior de Agronomia. Autoridade Florestal Nacional. Lisboa: III.1-III.53. (2010).Povž, M., Šumer, S. & Leiner, S. Sport fishing catch as an indicator of population size of the Danube roach Rutilus pigus virgo in Slovenia (Cyprinidae). Italian Journal of Zoology 65(S1), 545–548 (1998).Article 

    Google Scholar 
    Embke, H. S., Beard, T. D., Lynch, A. J. & Vander Zanden, M. J. Fishing for Food: Quantifying Recreational Fisheries Harvest in Wisconsin Lakes. Fisheries fsh.10486, https://doi.org/10.1002/fsh.10486 (2020).Karimov, B. et al. Inland capture fisheries and aquaculture in the Republic of Uzbekistan: current status and planning. FAO Fisheries and Aquaculture Circular. No. 1030/1. Rome, FAO. 124 p. (2009).Magqina, T., Nhiwatiwa, T., Dalu, M. T., Mhlanga, L. & Dalu, T. Challenges and possible impacts of artisanal and recreational fisheries on tigerfish Hydrocynus vittatus Castelnau 1861 populations in Lake Kariba, Zimbabwe. Scientific African 10, e00613 (2020).Article 

    Google Scholar 
    Embke, H. S. Global dataset of species-specific inland recreational fisheries harvest for consumption. U.S. Geological Survey https://doi.org/10.5066/P9904C3R (2022).Amano, T., González-Varo, J. P. & Sutherland, W. J. Languages are still a major barrier to global science. PLoS biology 14(12), e2000933 (2016).Article 

    Google Scholar 
    Cooke, S. J. et al. Recreational fisheries in inland waters. In J. F. Craig (Ed.) Freshwater Fisheries Ecology. John Wiley and Sons Ltd. (2016). More

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    Low phosphorus levels limit carbon capture by Amazonian forests

    Pan, Y. et al. Science 333, 988–993 (2011).PubMed 
    Article 

    Google Scholar 
    Bonan, G. B. Science 320, 1444–1449 (2008).PubMed 
    Article 

    Google Scholar 
    Craine, J. M. et al. Nature Ecol. Evol. 2, 1735–1744 (2018).PubMed 
    Article 

    Google Scholar 
    Cunha, H. F. V. et al. Nature 608, 558–562 (2022).Article 

    Google Scholar 
    Vitousek, P. M. & Sanford, R. L. Jr Annu. Rev. Ecol. Syst. 17, 137–167 (1986).Article 

    Google Scholar 
    Hedin, L. O., Brookshire, E. N. J., Menge, D. N. L. & Barron, A. R. Annu. Rev. Ecol. Evol. Syst. 40, 613–635 (2009).Article 

    Google Scholar 
    Ostertag, R. & DiManno, N. M. Front. Earth Sci. 4, 23 (2016).Article 

    Google Scholar 
    Wright, S. J. Ecol. Monogr. 89, e01382 (2019).Article 

    Google Scholar 
    Lugli, L. F. et al. New Phytol. 230, 116–128 (2021).PubMed 
    Article 

    Google Scholar 
    Muller-Landau, H. C. et al. New Phytol. 229, 3065–3087 (2021).PubMed 
    Article 

    Google Scholar 
    He, X. et al. Earth Syst. Sci. Data 13, 5831–5846 (2021).Article 

    Google Scholar 
    Elser, J. J. et al. Ecol. Lett. 10, 1135–1142 (2007).PubMed 
    Article 

    Google Scholar 
    LeBauer, D. S. & Treseder, K. K. Ecology 89, 371–379 (2008).PubMed 
    Article 

    Google Scholar 
    Arora, V. K. et al. Biogeosciences 17, 4173–4222 (2020).Article 

    Google Scholar 
    IPCC. Climate Change 2021: The Physical Science Basis. Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (eds Masson-Delmotte, V. et al.) (Cambridge Univ. Press, 2021).
    Google Scholar  More

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    A sustainable ocean for all

    Department of Animal Biology, Faculdade de Ciências, Universidade de Lisboa, Lisbon, PortugalCatarina Frazão SantosMARE–Marine and Environmental Sciences Center / ARNET–Aquatic Research Network, University of Lisbon, Lisbon, PortugalCatarina Frazão Santos & Carina Vieira da SilvaEnvironmental Economics Knowledge Center, NOVA-SBE, Carcavelos, PortugalCatarina Frazão Santos & Carina Vieira da SilvaSound Seas, Bethesda, MD, USATundi AgardyWorldFish, Batu Maung, Penang, MalaysiaEdward H. AllisonThe Peopled Seas Initiative, Vancouver, CanadaNathan J. BennettEqualSea Lab, University of Santiago de Compostela, A Coruña, SpainNathan J. Bennett & Sebastián VillasanteEnvironmental Sustainability Research Centre, Brock University, St. Catharines, ON, CanadaJessica L. BlytheMarine and Environmental Sciences Center, University of the Azores – FCT, Ponta Delgada, PortugalHelena CaladoHopkins Marine Station, Stanford University, Stanford, CA, USALarry B. Crowder & Elena GissiARC Centre of Excellence for Coral Reef Studies, Townsville, AustraliaJon C. DayQueen’s University Belfast, Belfast, Northern Ireland, UKWesley FlanneryNational Research Council, Institute of Marine Sciences, Venice, ItalyElena GissiInternational Union for Conservation of Nature and World Commission on Protected Areas, Cambridge, MA, USAKristina M. GjerdeMiddlebury Institute of International Studies at Monterey, Monterey, MA, USAKristina M. GjerdeThe University of the West Indies, St. Augustine Campus, St. Augustine, Trinidad and TobagoJudith F. GobinPermanent Mission of the Federated States of Micronesia to the United Nations, New York, USAClement Yow MulalapDuke University Marine Laboratory, Duke University, Durham, NC, USAMichael OrbachCentre for Marine Socioecology, University of Tasmania, Hobart, AustraliaGretta PeclInstitute for Marine and Antarctic Studies, University of Tasmania, Hobart, AustraliaGretta PeclFederal University of Santa Catarina, Florianópolis, SC, BrazilMarinez SchererCenter for Island Sustainability and Sea Grant, University of Guam, Mangilao, USAAustin J. SheltonSchool of Geography and the Environment, University of Oxford, Oxford, UKLisa Wedding More

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    Long-term study on survival and development of successive generations of Mytilus galloprovincialis cryopreserved larvae

    Short-term experimentsPotential toxic and cryoprotection effects of different CPA combinationsFocusing on toxicity bioassays (Figs. 1A, 2A), although there were certain CPA combinations that yielded significant abnormality percentages compared to controls, in general the CPA combinations did not yield any significant toxic effect. The use of Milli-Q Water instead of FSW did not enhance normal larval development after CPA exposure, neither did the addition of PVP at the concentrations tested, even in combination with trehalose (TRE) (p  > 0.05). In fact, the highest concentrations of PVP used in this experiment (9 and 12%) yielded significant abnormal development on exposed trochophores (Fig. 1A) (p  More

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    Direct evidence for phosphorus limitation on Amazon forest productivity

    Vitousek, P. M. Litterfall, nutrient cycling, and nutrient limitation in tropical forests. Ecology 65, 285–298 (1984).CAS 
    Article 

    Google Scholar 
    Wright, S. J. et al. Plant responses to fertilization experiments in lowland, species rich, tropical forests. Ecology 99, 1129–1138 (2018).PubMed 
    Article 

    Google Scholar 
    Turner, B. L. et al. Pervasive phosphorus limitation of tree species but not communities in tropical forests. Nature 555, 367–370 (2018).CAS 
    PubMed 
    Article 
    ADS 

    Google Scholar 
    Fleischer, K. et al. Amazon forest response to CO2 fertilization depend on plant phosphorus acquisition. Nat. Geosci. 12, 736–741 (2019).CAS 
    Article 
    ADS 

    Google Scholar 
    Goll, D. S. et al. Nutrient limitation reduces land carbon uptake in simulations with a model of combined carbon, nitrogen and phosphorus cycling. Biogeosciences 9, 3547–3569 (2012).CAS 
    Article 
    ADS 

    Google Scholar 
    Sun, Y. et al. Diagnosing phosphorus limitation in natural terrestrial ecosystems in carbon cycle models. Earths Future 5, 730–749 (2017).CAS 
    PubMed 
    PubMed Central 
    Article 
    ADS 

    Google Scholar 
    Zhang, Q. et al. Nitrogen and phosphorus limitations significantly reduce allowable CO2 emissions. Geophys. Lett. 41, 632–637 (2014).CAS 
    Article 
    ADS 

    Google Scholar 
    Luo, Y., Hui, D. & Zhang, D. Elevated CO2 stimulates net accumulations of carbon and nitrogen in land ecosystem: a meta analysis. Ecology 87, 53–63 (2006).PubMed 
    Article 

    Google Scholar 
    Jordan, C. F. The nutrient balance of an Amazonian rainforest. Ecology 63, 647–654 (1982).CAS 
    Article 

    Google Scholar 
    Walker, T. W. & Syers, J. K. The fate of phosphorus during pedogenesis. Geoderma 15, 1–19 (1976).CAS 
    Article 
    ADS 

    Google Scholar 
    Crews, T. E. et al. Changes in soil phosphorus fractions and ecosystem dynamics across a long chronosequence in Hawaii. Ecology 76, 1408–1424 (1995).Article 

    Google Scholar 
    Hedin, L. O. et al. Nutrient losses over four million years of tropical forest development. Ecology 84, 2231–2255 (2003).Article 

    Google Scholar 
    Dalling, J. W. et al. in Tropical Tree Physiology (Springer, 2016).Herrera, R. R. & Medina, E. Amazon ecosystems, their structure and functioning with particular emphasis on nutrients. Interciencia 3, 223–231 (1978).
    Google Scholar 
    Quesada, C. A. et al. Variations in chemical and physical properties of Amazon forest soils in relation to their genesis. Biogeosciences 7, 1515–1541 (2010).CAS 
    Article 
    ADS 

    Google Scholar 
    Quesada, C. A. et al. Basin wide variations in Amazon forest structure and function are mediated by both soils and climate. Biogeosciences 9, 2203–2246 (2012).Article 
    ADS 

    Google Scholar 
    Mercado, L. et al. Variations in Amazon forest productivity correlated with foliar nutrients and modelled rates of photosynthetic carbon supply. Philos. Trans. R. Soc. Lond. B Biol. Sci. 366, 3316–3329 (2011).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Wright, S. J. Plant responses to nutrient addition experiments conducted in tropical forests. Ecol. Monogr. 89, e01382 (2019).Article 

    Google Scholar 
    Yang, X. et al. The effects of phosphorus cycle dynamics carbon sources and sink in the Amazon region: a modelling study using ELM v1. J. Geophys. Res. Biogeosci. 124, 3686–3698 (2019).CAS 
    Article 

    Google Scholar 
    Sollins, P. Factors influencing species composition in tropical lowland rain forest: does soil matter? Ecology 79, 23–30 (1998).Article 

    Google Scholar 
    Alvarez-Clare, S. et al. A direct test of nitrogen and phosphorus limitation to net primary productivity in a lowland tropical wet forest. Ecology 94, 1540–1551 (2013).CAS 
    PubMed 
    Article 

    Google Scholar 
    Wright, S. J. et al. Potassium, phosphorus, or nitrogen limit root allocation, tree growth, or litter production in a lowland tropical forest. Ecology 92, 1616–1625 (2011).PubMed 
    Article 

    Google Scholar 
    Sayer, E. J. et al. Variable responses of lowland tropical forest nutrient status to fertilization and litter manipulation. Ecosystems 15, 387–400 (2012).CAS 
    Article 

    Google Scholar 
    Ganade, G. & Brown, V. Succession in old pastures of central Amazonia: role of soil fertility and plant litter. Ecology 83, 743–754 (2002).Article 

    Google Scholar 
    Markewitz, D. et al. Soil and tree response to P fertilization in a secondary tropical forest supported by an Oxisol. Biol. Fertil. Soils 48, 665–678 (2012).Article 

    Google Scholar 
    Davidson, E. et al. Nitrogen and phosphorus limitation of biomass growth in a tropical secondary forest. Ecol. Appl. 14, 150–163 (2004).Article 

    Google Scholar 
    Massad, T. et al. Interactions between fire, nutrients, and insect herbivores affect the recovery of diversity in the southern Amazon. Oecologia 172, 219–229 (2013).PubMed 
    Article 
    ADS 

    Google Scholar 
    Newbery, D. M. et al. Does low phosphorus supply limit seedling establishment and tree growth in groves of ectomycorrhizal trees in a central African rainforest? New Phytol. 156, 297–311 (2002).CAS 
    PubMed 
    Article 

    Google Scholar 
    Mirmanto, E. et al. Effects of nitrogen and phosphorus fertilization in a lowland evergreen rainforest. Philos. Trans. R. Soc. Lond. B Biol. Sci. 354, 1825–1829 (1999).CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Lugli, L. F. et al. Rapid responses of root traits and productivity to phosphorus and cation additions in a tropical lowland forest in Amazonia. New Phytol. 230, 116–128 (2020).Article 
    CAS 

    Google Scholar 
    Quesada, C. A. et al. Soils of Amazonia with particular reference to the rainfor sites. Biogeosciences 8, 1415–1440 (2011).CAS 
    Article 
    ADS 

    Google Scholar 
    Giardina, C. et al. Primary production and carbon allocation in relation to nutrient supply in a tropical experiment forest. Glob. Change Biol. 9, 1438–1450 (2003).Article 
    ADS 

    Google Scholar 
    Rowland, L. et al. Scaling leaf respiration with nitrogen and phosphorus in tropical forests across two continents. New Phytol. 214, 1064–1077 (2017).CAS 
    PubMed 
    Article 

    Google Scholar 
    Vicca, S. et al. Fertile forests produce biomass more efficiently. Ecol. Lett. 15, 520–526 (2012).CAS 
    PubMed 
    Article 

    Google Scholar 
    Wright, I. J. et al. The worldwide leaf economics spectrum. Nature 428, 821–826 (2004).CAS 
    PubMed 
    Article 
    ADS 

    Google Scholar 
    Hinsinger, P. How do plant roots acquire mineral nutrients? Chemical processes involved in the rhizosphere. Adv. Agron. 64, 225–265 (1998).CAS 
    Article 

    Google Scholar 
    Van Langehove, L. et al. Rapid root assimilation of added phosphorus in a lowland tropical rainforest of French Guiana. Soil Biol. Biochem. 140, 107646 (2019).Article 
    CAS 

    Google Scholar 
    Martins, N. P. et al. Fine roots stimulate nutrient release during early stages of litter decomposition in a central Amazon rainforest. Plant Soil 469, 287–303 (2021).CAS 
    Article 

    Google Scholar 
    Cordeiro, A. L. et al. Fine root dynamics vary with soil and precipitation in a low-nutrient tropical forest in the central Amazonia. Plant Environ. Interact. 220, 3–16 (2020).Article 

    Google Scholar 
    Yavitt, J. Soil fertility and fine root dynamics in response to four years of nutrient (N,P, K) fertilization in a lowland tropical moist forest, Panamá. Austral. Ecol. 36, 433–445 (2011).Article 

    Google Scholar 
    Wurzburger, N. & Wright, S. J. Fine root responses to fertilization reveal multiple nutrient limitation in a lowland tropical forest. Ecology 96, 2137–2146 (2015).PubMed 
    Article 

    Google Scholar 
    Waring, B. G., Aviles, D. P., Murray, J. G. & Powers, J. S. Plant community responses to stand level nutrient fertilization in a secondary tropical dry forest. Ecology 100, e02691 (2019).PubMed 
    Article 

    Google Scholar 
    Jansens, I. A. et al. Reductions of forest soil respiration in response to nitrogen deposition. Nat. Geosci. 3, 315–322 (2010).Article 
    ADS 
    CAS 

    Google Scholar 
    Alvarez Claire, S. et al. Do foliar, litter, and root nitrogen and phosphorus concentration reflect nutrient limitation in a lowland tropical wet forest? PLoS ONE 10, e0123796 (2015).Article 
    CAS 

    Google Scholar 
    Bouma, T. in Advances in Photosynthesis and Respiration Vol. 18 (eds Lambers, H. & Ribas-Carbo, M.) 177–194 (Springer, 2005).Malhi, Y. et al. Comprehensive assessment of carbon productivity, allocation and storage in three Amazonian forests. Glob. Change Biol. 15, 1255–1274 (2009).Article 
    ADS 

    Google Scholar 
    Aragão, L. E. O. et al. Above and below ground net primary productivity across ten Amazonian forests on contrasting soils. Biogeosciences 6, 2759–2778 (2009).Article 
    ADS 

    Google Scholar 
    Cox, P. M. et al. Sensitivity of tropical carbon to climate change constrained by carbon dioxide variability. Nature 494, 341–344 (2013).CAS 
    PubMed 
    Article 
    ADS 

    Google Scholar 
    Quesada, C. A. & Lloyd, J. in Interactions Between Biosphere, Atmosphere and Human Land Use in the Amazon Basin (eds Nagy, L. et al.) 267–299 (Springer, 2016).Girardin, C. A. J. et al. Seasonal trends of Amazonian rainforest phenology, net primary production, and carbon allocation. Glob. Biogeochem. Cycles 30, 700–715 (2016).CAS 
    Article 
    ADS 

    Google Scholar 
    Laurance, W. F. et al. An Amazonian rainforest and its fragments as a laboratory of global change. Biol. Rev. 93, 223–247 (2018).PubMed 
    Article 

    Google Scholar 
    De Oliveira, A. & Mori, S. A. A central Amazonia terra firme forest. I. High tree species richness on poor soils. Biodivers. Conserv. 8, 1219–1244 (1999).Article 

    Google Scholar 
    Ferreira, S. J. F., Luizão, F. J. & Dallarosa, R. L. G. Throughfall and rainfall interception by an upland forest submitted to selective logging in Central Amazonia [Portuguese]. Acta Amaz. 35, 55–62 (2005).Article 

    Google Scholar 
    Tanaka, L. D. S., Satyamurty, P. & Machado, L. A. T. Diurnal variation of precipitation in central Amazon Basin. Int. J. Climatol. 34, 3574–3584 (2014).Article 

    Google Scholar 
    Duque, A. et al. Insights into regional patterns of Amazonian forest structure and dominance from three large terra firme forest dynamics plots. Biodivers. Conserv. 26, 669–686 (2017).Article 

    Google Scholar 
    Martins, D. L. et al. Soil induced impacts on forest structure drive coarse wood debris stocks across central Amazonia. Plant Ecol. Divers. 8, 229–241 (2014).Article 

    Google Scholar 
    Metcalfe, D. B. et al. A method for extracting plant roots from soil which facilitates rapid sample processing without compromising measurent accuracy. New Phytol. 174, 697–703 (2007).CAS 
    PubMed 
    Article 

    Google Scholar 
    Chave, J. et al. Improved allometric to estimate the above ground biomass of tropical trees. Glob. Change Biol. 20, 3177–3190 (2014).Article 
    ADS 

    Google Scholar 
    Chave, J. et al. Towards a worldwide wood economics spectrum. Ecol. Lett. 12, 351–366 (2009).PubMed 
    Article 

    Google Scholar 
    Zanne, A. E. et al. Global Wood Density Database https://doi.org/10.5061/dryad.234 (2009).Higuchi, N. & Carvalho, J. A. in Anais do Seminário: Emissão e Sequestro de CO2—Uma Nova Oportunidade de Negócios para o Brasil (CVRD, 1994).Brienen, R. J. W., Philips, O. L. & Zagt, R. J. Long term decline of the Amazon carbon sink. Nature 519, 344–348 (2015).CAS 
    PubMed 
    Article 
    ADS 

    Google Scholar 
    Malhado, A. C. M. et al. Seasonal leaf dynamics in an Amazonian tropical forest. Forest Ecol. Manag. 258, 1161–1165 (2009).Article 

    Google Scholar 
    Kuznetsova, A., Brockhoff, P. B. & Christensen, R. H. B. lmerTest Package: tests in linear mixed effects models. J. Stat. Softw. 82, 1–26 (2017).Article 

    Google Scholar 
    Bates, D., Marcher, M., Bolker, B. M. & Walker, S. C. Fitting linear mixed effects models using lme4. J. Stat. Softw. 67, 1–48 (2015).Article 

    Google Scholar 
    Moraes, A. C. M. et al. Fine Litterfall Production and Nutrient Composition Data from a Fertilized Site in Central Amazon, Brazil (NERC, 2020).Cunha, H. F. V. et al. Fine Root Biomass in Fertilised Plots in the Central Amazon, 2017–2019 (NERC Environmental Information Data Centre, 2021).Cunha, H. F. V. et al. Tree Census and Diameter Increment in Fertilised Plots in the Central Amazon, 2017–2020 (NERC Environmental Information Data Centre, 2021).Cunha, H. F. V. et al. Leaf Area Index (LAI) in Fertilised Plots in the Central Amazon, 2017–2018 (NERC Environmental Information Data Centre, 2021). More

  • in

    Potential of microbiome-based solutions for agrifood systems

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  • in

    The early arrival of spring doesn’t boost annual tree growth

    Dow, C. et al. Nature 608, 552–557 (2022).Article 

    Google Scholar 
    Friedlingstein, P. et al. Earth Syst. Sci. Data 12, 3269–3340 (2020).Article 

    Google Scholar 
    Menzel, A. & Fabian, P. Nature 397, 659 (1999).Article 

    Google Scholar 
    Piao, S. et al. Nature Rev. Earth Environ. 1, 14–27 (2020).Article 

    Google Scholar 
    Cuny, H. E. et al. Nature Plants 1, 15160 (2015).PubMed 
    Article 

    Google Scholar 
    Körner, C. Curr. Opin. Plant Biol. 25, 107–114 (2015).PubMed 
    Article 

    Google Scholar 
    Gessler, A. & Treydte, K. New Phytol. 209, 1338–1340 (2016).PubMed 
    Article 

    Google Scholar 
    Hilty, J., Muller, B., Pantin, F. & Leuzinger, S. New Phytol. 232, 25–41 (2021).PubMed 
    Article 

    Google Scholar 
    Jiang, M. et al. Nature 580, 227–231 (2020).PubMed 
    Article 

    Google Scholar 
    Guillemot, J. et al. New Phytol. 214, 180–193 (2017).PubMed 
    Article 

    Google Scholar 
    Fatichi, S., Pappas, C., Zscheischler, J. & Leuzinger, S. New Phytol. 221, 652–668 (2019).PubMed 
    Article 

    Google Scholar 
    Friend, A. D. et al. Annu. For. Sci. 76, 49 (2019).Article 

    Google Scholar 
    Zuidema, P. A., Poulter, B. & Frank, D. C. Trends Plant Sci. 23, 1006–1015 (2018).PubMed 
    Article 

    Google Scholar 
    Martínez-Sancho, E., Treydte, K., Lehmann, M. M., Rigling, A. & Fonti, P. New Phytol. https://doi.org/10.1111/nph.18224 (2022).Article 

    Google Scholar  More

  • in

    Increased genetic diversity loss and genetic differentiation in a model marine diatom adapted to ocean warming compared to high CO2

    Field CB, Behrenfeld MJ, Randerson JT, Falkowski P. Primary production of the biosphere: integrating terrestrial and oceanic components. Science. 1998;281:237–40. https://doi.org/10.1126/science.281.5374.237CAS 
    Article 
    PubMed 

    Google Scholar 
    Falkowski PG, Fenchel T, Delong EF. The microbial engines that drive Earth’s biogeochemical cycles. Science. 2008;320:1034–9. https://doi.org/10.1126/science.1153213CAS 
    Article 
    PubMed 

    Google Scholar 
    Gattuso J-P, Magnan A, Billé R, Cheung WWL, Howes EL, Joos F, et al. Contrasting futures for ocean and society from different anthropogenic CO2 emissions scenarios. Science. 2015;349:aac4722. https://doi.org/10.1126/science.aac4722Steinacher M, Joos F, Frölicher TL, Bopp L, Cadule P, Cocco V, et al. Projected 21st century decrease in marine productivity: a multi-model analysis. Biogeosciences. 2010;7:979–1005. https://doi.org/10.5194/bg-7-979-2010CAS 
    Article 

    Google Scholar 
    Henson SA, Cael BB, Allen SR, Dutkiewicz S. Future phytoplankton diversity in a changing climate. Nat Commun. 2021;12:5372. https://doi.org/10.1038/s41467-021-25699-wCAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Thomas MK, Kremer CT, Klausmeier CA, Litchman E. A global pattern of thermal adaptation in marine phytoplankton. Science. 2012;338:1085–8. https://doi.org/10.1126/science.1224836CAS 
    Article 
    PubMed 

    Google Scholar 
    Collins S, Boyd PW, Doblin MA. Evolution, microbes, and changing ocean conditions. Annu Rev Mar Sci. 2020;12:181–208. https://doi.org/10.1146/annurev-marine-010318-095311Article 

    Google Scholar 
    Schaum CE, Buckling A, Smirnoff N, Studholme DJ, Yvon-Durocher G. Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom. Nat Commun. 2018;9:1719. https://doi.org/10.1038/s41467-018-03906-5CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Lohbeck KT, Riebesell U, Reusch TBH. Adaptive evolution of a key phytoplankton species to ocean acidification. Nat Geosci. 2012;5:346–51. https://doi.org/10.1038/ngeo1441CAS 
    Article 

    Google Scholar 
    Jin P, Gao K, Beardall J. Evolutionary responses of a coccolithophorid Gephyrocapsa oceanica to ocean acidification. Evolution. 2013;67:1869–78. https://doi.org/10.1111/evo.12112CAS 
    Article 
    PubMed 

    Google Scholar 
    Schlüter L, Lohbeck KT, Gutowska MA, Gröger JP, Riebesell U, Reusch TBH. Adaptation of a globally important coccolithophore to ocean warming and acidification. Nat Clim Change. 2014;4:1024–30. https://doi.org/10.1038/nclimate2379CAS 
    Article 

    Google Scholar 
    Listmann L, LeRoch M, Schlüter L, Thomas MK, Reusch TBH. Swift thermal reaction norm evolution in a key marine phytoplankton species. Evol Appl. 2016;9:1156–64. https://doi.org/10.1111/eva.12362Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Zhong J, Guo Y, Liang Z, Huang Q, Lu H, Pan J, et al. Adaptation of a marine diatom to ocean acidification and warming reveals constraints and trade-offs. Sci Total Environ. 2021;771:145167. https://doi.org/10.1016/j.scitotenv.2021.145167CAS 
    Article 
    PubMed 

    Google Scholar 
    Brennan GL, Colegrave N, Collins S. Evolutionary consequences of multidriver environmental change in an aquatic primary producer. Proc Natl Acad Sci USA. 2017;114:9930–5. https://doi.org/10.1073/pnas.1703375114CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Zhang S, Wu Y, Lin L, Wang D. Molecular insights into the circadian clock in marine diatoms. Acta Oceano Sin. 2022;41:1–12. https://doi.org/10.1007/s13131-021-1962-4Article 

    Google Scholar 
    Nagelkerken I, Connell SD. Global alteration of ocean ecosystem functioning due to increasing human CO2 emissions. Proc Natl Acad Sci USA. 2015;112:13272–7. https://doi.org/10.1073/pnas.1510856112CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Boyd PW, Collins S, Dupont S, Fabricius K, Gattuso JP, Havenhand J, et al. Experimental strategies to assess the biological ramifications of multiple drivers of global ocean change-a review. Glob Change Biol. 2018;24:2239–61. https://doi.org/10.1111/gcb.14102Article 

    Google Scholar 
    Matsuda Y, Nakajima K, Tachibana M. Recent progresses on the genetic basis of the regulation of CO2 acquisition systems in response to CO2 concentration. Photosynth Res. 2011;109:191–203. https://doi.org/10.1007/s11120-011-9623-7CAS 
    Article 
    PubMed 

    Google Scholar 
    Ohno N, Inoue T, Yamashiki R, Nakajima K, Kitahara Y, Ishibashi M, et al. CO2-cAMP-responsive cis-elements targeted by a transcription factor with CREB/ATF-like basic zipper domain in the marine diatom Phaeodactylum tricornutum. Plant Physiol. 2012;158:499–513. https://doi.org/10.1104/pp.111.190249CAS 
    Article 
    PubMed 

    Google Scholar 
    Hennon GMM, Ashworth J, Groussman RD, Berthiaume C, Morales RL, Baliga NS, et al. Diatom acclimation to elevated CO2 via cAMP signalling and coordinated gene expression. Nat Clim Change. 2015;5:761–5. https://doi.org/10.1038/nclimate2683CAS 
    Article 

    Google Scholar 
    Toseland A, Daines SJ, Clark JR, Kirkham A, Strauss J, Uhlig C, et al. The impact of temperature on marine phytoplankton resource allocation and metabolism. Nat Clim Change. 2013;3:979–84. https://doi.org/10.1038/nclimate1989CAS 
    Article 

    Google Scholar 
    Gao K, Beardall J, Häder DP, Hall-Spencer JM, Gao G, Hutchins DA. Effects of ocean acidification on marine photosynthetic organisms under the concurrent influences of warming, UV radiation, and deoxygenation. Front Mar Sci. 2019;6:322. https://doi.org/10.3389/fmars.2019.00322Article 

    Google Scholar 
    Tu L, Su P, Zhang Z, Gao L, Wang J, Hu T, et al. Genome of Tripterygium wilfordii and identification of cytochrome P450 involved in triptolide biosynthesis. Nat Commun. 2020;11:971. https://doi.org/10.1038/s41467-020-14776-1CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Treves H, Siemiatkowska B, Luzarowska U, Murik O, Fernandez-Pozo N, Moraes TA, et al. Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nat Plants. 2020;6:1031–43. https://doi.org/10.1038/s41477-020-0729-9CAS 
    Article 
    PubMed 

    Google Scholar 
    Van den Bergh B, Swings T, Fauvart M, Michels J. Experimental design, population dynamics, and diversity in microbial experimental evolution. Microbiol Mol Biol Rev. 2018;82:e00008–18.PubMed 
    PubMed Central 

    Google Scholar 
    Elena SF, Lenski RE. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat Rev Genet. 2003;4:457–69. https://doi.org/10.1038/nrg1088CAS 
    Article 
    PubMed 

    Google Scholar 
    Colegrave N, Collins S. Experimental evolution: experimental evolution and evolvability. Heredity. 2008;100:464–70. https://doi.org/10.1038/sj.hdy.6801095CAS 
    Article 
    PubMed 

    Google Scholar 
    Jin P, Ji Y, Huang Q, Li P, Pan J, Lu H, et al. A reduction in metabolism explains the trade‐offs associated with the long‐term adaptation of phytoplankton to high CO2 concentrations. N Phytol. 2022;233:2155–67. https://doi.org/10.1111/nph.17917CAS 
    Article 

    Google Scholar 
    Flombaum P, Gallegos JL, Gordillo RA, Rincón J, Zabala LL, Jiao N, et al. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proc Natl Acad Sci USA. 2013;110:9824–9. https://doi.org/10.1073/pnas.1307701110CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hutchins DA, Walworth NG, Webb EA, Saito MA, Moran D, Mcllvin MR, et al. Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated carbon dioxide. Nat Commun. 2015;6:8155. https://doi.org/10.1038/ncomms9155Article 
    PubMed 

    Google Scholar 
    Padfield D, Yvon-Durocher G, Buckling A, Jennings S, Yvon-Durocher G. Rapid evolution of metabolic traits explains thermal adaptation in phytoplankton. Ecol Lett. 2016;19:133–42.Article 

    Google Scholar 
    Coles VJ, Stukel MR, Brooks MT, Burd A, Crump BC, Moran MA, et al. Ocean biogeochemistry modeled with emergent trait-based genomics. Science. 2017;358:1149–54. https://doi.org/10.1126/science.aan5712CAS 
    Article 
    PubMed 

    Google Scholar 
    Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE. On the origin and spread of an adaptive allele in deer mice. Science. 2009;325:1095–8. https://doi.org/10.1126/science.1175826CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Van’t Hof AE, Campagne P, Rigden DJ, Yung CJ, Lingley J, Quail MA, et al. The industrial melanism mutation in British peppered moths is a transposable element. Nature. 2016;534:102–5. https://doi.org/10.1038/nature17951CAS 
    Article 
    PubMed 

    Google Scholar 
    Bitter MC, Kapsenberg L, Gattuso JP, Pfister CA. Standing genetic variation fuels rapid adaptation to ocean acidification. Nat Commun. 2019;10:5821. https://doi.org/10.1038/s41467-019-13767-1CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Lai YT, Yeung CK, Omland KE, Pang EL, Hao Y, Liao BY, et al. Standing genetic variation as the predominant source for adaptation of a songbird. Proc Natl Acad Sci USA. 2019;116:2152–7. https://doi.org/10.1073/pnas.1813597116Armbrust EV. The life of diatoms in the world’s oceans. Nature. 2009;459:185–92. https://doi.org/10.1038/nature08057CAS 
    Article 
    PubMed 

    Google Scholar 
    Rastogi A, Vieira FRJ, Deton-Cabanillas AF, Veluchamy A, Cantrel C, Wang G, et al. A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum. ISME J. 2020;14:347–63. https://doi.org/10.1038/s41396-019-0528-3Article 
    PubMed 

    Google Scholar 
    Jin P, Agustí S. Fast adaptation of tropical diatoms to increased warming with trade-offs. Sci Rep. 2018;8:17771. https://doi.org/10.1038/s41598-018-36091-yCAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Barton S, Jenkins J, Buckling A, Schaum CE, Smirnoff N, Raven JA, et al. Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecol Lett. 2020;23:722–33.Article 

    Google Scholar 
    Guillard RR, Ryther JH. Studies of marine planktonic diatoms: I. Cyclotella nana Hustedt, and Detonula confervacea (Cleve) Gran. Can J Microbiol. 1962;8:229–39. https://doi.org/10.1139/m62-029CAS 
    Article 
    PubMed 

    Google Scholar 
    Huysman MJ, Martens C, Vandepoele K, Gillard J, Rayko E, Heijde M, et al. Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling. Genome Biol. 2010;11:R17. https://doi.org/10.1186/gb-2010-11-2-r17CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    IPCC. Summary for policymakers. In: Masson-Delmotte V, Zhai P, Pirani A, Connors SL, Péan C, Berger S, et al. editors. Climate change 2021: the physical science basis. Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change. Switzerland: IPCC; 2021.Jiang H, Gao K. Effects of lowering temperature during culture on the production of polyunsaturated fatty acids in the marine diatom Phaeodactylum tricornutum (Bacillariophyceae). J Phycol. 2004;40:651–4. https://doi.org/10.1111/j.1529-8817.2004.03112.xCAS 
    Article 

    Google Scholar 
    Pérez EB, Pina IC, Rodríguez LP. Kinetic model for growth of Phaeodactylum tricornutum in intensive culture photobioreactor. Biochem Eng J. 2008;40:520–5. https://doi.org/10.1016/j.bej.2008.02.007CAS 
    Article 

    Google Scholar 
    Boyd PW, Rynearson TA, Armstrong EA, Fu F, Hayashi K, Hu Z, et al. Marine phytoplankton temperature versus growth responses from polar to tropical waters-outcome of a scientific community-wide study. PLoS One. 2013;8:e63091 https://doi.org/10.1371/journal.pone.0063091CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Zeng X, Jin P, Jiang Y, Yang H, Zhong J, Liang Z, et al. Light alters the responses of two marine diatoms to increased warming. Mar Environ Res. 2020;154:104871. https://doi.org/10.1016/j.marenvres.2019.104871CAS 
    Article 
    PubMed 

    Google Scholar 
    Chen S, Zhou Y, Chen Y, Gu J. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34:i884–i890. https://doi.org/10.1093/bioinformatics/bty560CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 2008;456:239–44.CAS 
    Article 

    Google Scholar 
    Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754–60. https://doi.org/10.1093/bioinformatics/btp324CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010;38:e164. https://doi.org/10.1093/nar/gkq603CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9:357–9. https://doi.org/10.1038/nmeth.1923CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015;12:357–60. https://doi.org/10.1038/nmeth.3317CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Pertea M, Pertea GM, Antonescu CM, Chang TC, Mendell JT, Salzberg SL. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat Biotechnol. 2015;33:290–5. https://doi.org/10.1038/nbt.3122CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Pertea M, Kim D, Pertea GM, Leek JT, Salzberg SL. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nat Protoc. 2016;11:1650–67. https://doi.org/10.1038/nprot.2016.095CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15:550. https://doi.org/10.1186/s13059-014-0550-8CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Gifford RM. Plant respiration in productivity models: conceptualisation, representation and issues for global terrestrial carbon-cycle research. Funct Plant Biol. 2003;30:171–86. https://doi.org/10.1071/FP02083Article 
    PubMed 

    Google Scholar 
    Jassby AD, Platt T. Mathematical formulation of the relationship between photosynthesis and light for phytoplankton. Limnol Oceanogr. 1976;21:540–7. https://doi.org/10.4319/lo.1976.21.4.0540CAS 
    Article 

    Google Scholar  More