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Larvae display conserved gene expression response to heat stressLarval gene expression (GE) was quantified to assess if plastic responses in gene expression to heat stress varied depending on site of origin or parental identity. Larval survival under heat stress varied between crosses, with larvae produced from dams sourced from far Northern GBR sites exhibiting higher thermal tolerance (Fig. 1b). The cross with the lowest thermal tolerance (LSxSB) did not have any larvae survive the heat treatment (Fig. 1b, Supplementary Fig. 2). GE was examined in aposymbiotic larvae experiencing ambient conditions prior to the heat treatment (“pre”), larvae after exposure to simulated heat stress (35.5 °C for 56 hours, “post heat”), and a simultaneous control temperature of 27 °C (“post ambient”). Therefore, the “pre” larval treatment provided transcriptomic baselines of GE between genetic crosses while “post heat” and “post ambient” comparisons show a baseline for cross-specific heat responses without the confounding effect of symbiosis found in the post-metamorphic phase. Using a principal coordinates analysis (PCoA), we find that GE patterns in larvae were driven by treatment (“pre”, “post ambient”, “post heat”), explaining 29.2% of the variation in survival (padonis  More