More stories

  • in

    Neuro-molecular characterization of fish cleaning interactions

    Oliveira, R. F. Social plasticity in fish: Integrating mechanisms and function. J. Fish Biol. 81, 2127–2150 (2012).CAS 
    PubMed 

    Google Scholar 
    Oliveira, R. F. Mind the fish: Zebrafish as a model in cognitive social neuroscience. Front. Neural Circuits 7, 1–15 (2013).
    Google Scholar 
    Hofmann, H. A. et al. An evolutionary framework for studying mechanisms of social behavior. Trends Ecol. Evol. 29, 581–589 (2014).PubMed 

    Google Scholar 
    Maruska, K., Soares, M., Lima-Maximino, M., de Siqueira-Silva, D. H. & Maximino, C. Social plasticity in the fish brain: Neuroscientific and ethological aspects. Brain Res. 1711, 156–172 (2019).CAS 
    PubMed 

    Google Scholar 
    O’Connell, L. A. & Hofmann, H. A. The Vertebrate mesolimbic reward system and social behavior network: A comparative synthesis. J. Comp. Neurol. 519, 3599–3639 (2011).PubMed 

    Google Scholar 
    Teles, M. C., Almeida, O., Lopes, J. S. & Oliveira, R. F. Social interactions elicit rapid shifts in functional connectivity in the social decision-making network of zebrafish. Proc. R. Soc. B Biol. Sci. 282, 20151099 (2015).
    Google Scholar 
    Rittschof, C. C. et al. Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee. Proc. Natl. Acad. Sci. U.S.A. 111, 17929–17934 (2014).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Kasper, C., Colombo, M., Aubin-horth, N. & Taborsky, B. Physiology & behavior brain activation patterns following a cooperation opportunity in a highly social cichlid fish. Physiol. Behav. 195, 37–47 (2018).CAS 
    PubMed 

    Google Scholar 
    Filby, A. L., Paull, G. C., Bartlett, E. J., Van Look, K. J. W. & Tyler, C. R. Physiological and health consequences of social status in zebrafish (Danio rerio). Physiol. Behav. 101, 576–587 (2010).CAS 
    PubMed 

    Google Scholar 
    Munchrath, L. A. & Hofmann, H. A. Distribution of sex steroid hormone receptors in the brain of an African cichlid fish, Astatotilapia burtoni. J. Comp. Neurol. 518, 3302–3326 (2010).CAS 
    PubMed 

    Google Scholar 
    Robinson, G. E., Fernald, R. D. & Clayton, D. F. Genes and social behavior. Science 322, 896–900 (2008).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Barron, A. B. & Robinson, G. E. The utility of behavioral models and modules in molecular analyses of social behavior. Genes Brain Behav. 7, 257–265 (2008).PubMed 

    Google Scholar 
    Qiu, Y.-Q. KEGG pathway database. In Encyclopedia of Systems Biology (ed. Dubitzky, W.) 1068–1069 (Springer, 2013).
    Google Scholar 
    Bloch, G. & Grozinger, C. M. Social molecular pathways and the evolution of bee societies. Philos. Trans. R. Soc. B Biol. Sci. 366, 2155–2170 (2011).
    Google Scholar 
    Waldie, P. A., Blomberg, S. P., Cheney, K. L., Goldizen, A. W. & Grutter, A. S. Long-term effects of the cleaner fish Labroides dimidiatus on coral reef fish communities. PLoS ONE 6, e21201 (2011).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Grutter, A. S. Cleaner fish really do clean. Nature. 398, 672–673. https://doi.org/10.1038/19443 (1999).CAS 
    Article 

    Google Scholar 
    Soares, M., Oliveira, R. F., Ros, A. F. H., Grutter, A. S. & Bshary, R. Tactile stimulation lowers stress in fish. Nat. Commun. 2, 534–535 (2011).PubMed 

    Google Scholar 
    Soares, M., Gerlai, R. & Maximino, C. The integration of sociality, monoamines and stress neuroendocrinology in fish models: Applications in the neurosciences. J. Fish Biol. 93, 170–191 (2018).PubMed 

    Google Scholar 
    Grutter, A. Parasite removal rates by the cleaner wrasse Labroides dimidiatus. Mar. Ecol. Prog. Ser. 130, 61–70 (1996).
    Google Scholar 
    Grutter, A. S. Effect of the removal of cleaner fish on the abundance and species composition of reef fish. Oecologia 111, 137–143 (1997).PubMed 

    Google Scholar 
    Tebbich, S., Bshary, R. & Grutter, A. Cleaner fish Labroides dimidiatus recognise familiar clients. Anim. Cogn. 5, 139–145 (2002).CAS 
    PubMed 

    Google Scholar 
    Pinto, A., Oates, J., Grutter, A. & Bshary, R. Cleaner wrasses Labroides dimidiatus are more cooperative in the presence of an audience. Curr. Biol. 21, 1140–1144 (2011).CAS 
    PubMed 

    Google Scholar 
    Soares, M. The neurobiology of mutualistic behavior: The cleanerfish swims into the spotlight. Front. Behav. Neurosci. 11, 1–12 (2017).
    Google Scholar 
    Soares, M. C., Bshary, R., Mendonça, R., Grutter, A. S. & Oliveira, R. F. Arginine vasotocin regulation of interspecific cooperative behaviour in a cleaner fish. PLoS ONE 7, 39583 (2012).
    Google Scholar 
    Paula, J. R., Messias, J., Grutter, A., Bshary, R. & Soares, M. The role of serotonin in the modulation of cooperative behavior. Behav. Ecol. 26, 1005–1012 (2015).
    Google Scholar 
    Schunter, C., Jarrold, M. D., Munday, P. L. & Ravasi, T. Diel CO2 fluctuations alter the molecular response of coral reef fishes to ocean acidification conditions. Mol. Ecol. 30, 5150–5118 (2021).
    Google Scholar 
    Soares, M. C., Santos, T. P. & Messias, J. P. M. Dopamine disruption increases cleanerfish cooperative investment in novel client partners. R. Soc. Open Sci. 4, 1–7 (2017).
    Google Scholar 
    Paula, J. R. et al. Neurobiological and behavioural responses of cleaning mutualisms to ocean warming and acidification. Sci. Rep. 9, 1–10 (2019).
    Google Scholar 
    Cardoso, S. C. et al. Arginine vasotocin modulates associative learning in a mutualistic cleaner fish. Behav. Ecol. Sociobiol. 69, 1173–1181 (2015).
    Google Scholar 
    Cardoso, S. C. et al. Forebrain neuropeptide regulation of pair association and behavior in cooperating cleaner fish. Physiol. Behav. 145, 1–7 (2015).CAS 
    PubMed 

    Google Scholar 
    O’Connell, L. A., Fontenot, M. R. & Hofmann, H. A. Characterization of the dopaminergic system in the brain of an African cichlid fish, Astatotilapia burtoni. J. Comp. Neurol. 519, 75–92 (2011).PubMed 

    Google Scholar 
    Vernier, P. The Brains of Teleost Fishes. Evolution of Nervous Systems 2nd edn, 1–4 (Elsevier, 2016).
    Google Scholar 
    Weitekamp, C. A. & Hofmann, H. A. Neuromolecular correlates of cooperation and conflict during territory defense in a cichlid fish. Horm. Behav. 89, 145–156 (2017).CAS 
    PubMed 

    Google Scholar 
    Messias, J., Santos, T. P., Pinto, M. & Soares, M. C. Stimulation of dopamine D1 receptor improves learning capacity in cooperating cleaner fish. Proc. R. Soc. B Biol. Sci. 283, 20152272 (2016).
    Google Scholar 
    Bshary, R. & Grutter, A. S. Punishment and partner switching cause cooperative behaviour in a cleaning mutualism. Biol. Lett. 1, 396–399 (2005).PubMed 
    PubMed Central 

    Google Scholar 
    Bajaffer, A., Mineta, K. & Gojobori, T. Evolution of memory system-related genes. FEBS Open Bio 11, 3201–3210 (2021).PubMed 
    PubMed Central 

    Google Scholar 
    Soares, M., Cardoso, S. C., Grutter, A. S., Oliveira, R. F. & Bshary, R. Cortisol mediates cleaner wrasse switch from cooperation to cheating and tactical deception. Horm. Behav. 66, 346–350 (2014).CAS 
    PubMed 

    Google Scholar 
    de Abreu, M. S., Messias, J., Thörnqvist, P. O., Winberg, S. & Soares, M. C. The variable monoaminergic outcomes of cleaner fish brains when facing different social and mutualistic contexts. PeerJ 2018, 1–17 (2018).
    Google Scholar 
    Terry, W. S. Classical conditioning. In Learning and Memory (ed. Terry, W. S.) 76–112 (Psychology Press, 2021).
    Google Scholar 
    Dunn, A. R. et al. Synaptic vesicle glycoprotein 2C (SV2C) modulates dopamine release and is disrupted in Parkinson disease. Proc. Natl. Acad. Sci. U.S.A. 114, E2253–E2262 (2017).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Studzinski, A. L. M., Barros, D. M. & Marins, L. F. Growth hormone (GH) increases cognition and expression of ionotropic glutamate receptors (AMPA and NMDA) in transgenic zebrafish (Danio rerio). Behav. Brain Res. 294, 36–42 (2015).CAS 
    PubMed 

    Google Scholar 
    von Trotha, J. W., Vernier, P. & Bally-Cuif, L. Emotions and motivated behavior converge on an amygdala-like structure in the zebrafish. Eur. J. Neurosci. 40, 3302–3315 (2014).
    Google Scholar 
    Hoppmann, V., Wu, J. J., Søviknes, A. M., Helvik, J. V. & Becker, T. S. Expression of the eight AMPA receptor subunit genes in the developing central nervous system and sensory organs of zebrafish. Dev. Dyn. 237, 788–799 (2008).CAS 
    PubMed 

    Google Scholar 
    Weld, M. M., Kar, S., Maler, L. & Quirion, R. The distribution of excitatory amino acid binding sites in the brain of an electric fish, Apteronotus leptorhynchus. J. Chem. Neuroanat. 4, 39–61 (1991).
    Google Scholar 
    Zoicas, I. & Kornhuber, J. The role of metabotropic glutamate receptors in social behavior in Rodents. Int. J. Mol. Sci. 20, 1412 (2019).CAS 
    PubMed Central 

    Google Scholar 
    Borroni, A. M., Fichtenholtz, H., Woodside, B. L. & Teyler, T. J. Role of voltage-dependent calcium channel long-term potentiation (LTP) and NMDA LTP in spatial memory. J. Neurosci. 20, 9272–9276 (2000).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Oliveira, R. F. Social plasticity in fish: Integrating mechanisms. J. Fish Biol. 81, 2127–2150 (2012).CAS 
    PubMed 

    Google Scholar 
    O’Connell, L. A., Ding, J. H. & Hofmann, H. A. Sex differences and similarities in the neuroendocrine regulation of social behavior in an African cichlid fish. Horm. Behav. 64, 468–476 (2013).PubMed 

    Google Scholar 
    Soares, M., Bshary, R., Cardoso, S. C. & Côté, I. M. The meaning of jolts by fish clients of cleaning gobies. Ethology 114, 209–214 (2008).
    Google Scholar 
    Grutter, A. S. & Bshary, R. Cleaner wrasse prefer client mucus: Support for partner control mechanisms in cleaning interactions. Proc. R. Soc. B Biol. Sci. 270, S242–S244. https://doi.org/10.1098/rsbl.2003.0077 (2003).Article 

    Google Scholar 
    Soares, M. et al. Hormonal mechanisms of cooperative behaviour. Philos. Trans. R. Soc. B Biol. Sci. 365, 2737–2750 (2010).
    Google Scholar 
    Alberini, C. M. Transcription factors in long-term memory and synaptic plasticity. Physiol. Rev. 89, 121–145 (2009).CAS 
    PubMed 

    Google Scholar 
    Dou, Y. et al. Memory function in feeding habit transformation of mandarin fish (Siniperca chuatsi). Int. J. Mol. Sci. 19, 1254 (2018).PubMed Central 

    Google Scholar 
    Blanton, M. L. & Specker, J. L. The hypothalamic-pituitary-thyroid (HPT) axis in fish and its role in fish development and reproduction. Crit. Rev. Toxicol. 37, 97–115 (2007).CAS 
    PubMed 

    Google Scholar 
    Kawauchi, H., Sower, S. A. & Moriyama, S. Chapter 5. The neuroendocrine regulation of prolactin and somatolactin secretion in fish. In Fish Physiology Vol. 28 (eds Kawauchi, H. et al.) 197–234 (Elsevier Inc., 2009).
    Google Scholar 
    Helmreich, D. L., Parfitt, D. B., Lu, X. Y., Akil, H. & Watson, S. J. Relation between the hypothalamic-pituitary-thyroid (HPT) axis and the hypothalamic-pituitary-adrenal (HPA) axis during repeated stress. Neuroendocrinology 81, 183–192 (2005).CAS 
    PubMed 

    Google Scholar 
    Jönsson, E. & Björnsson, B. Physiological functions of growth hormone in fish with special reference to its influence on behaviour. Fish. Sci. 68, 742–748 (2002).
    Google Scholar 
    Zoeller, R. T., Tan, S. W. & Tyl, R. W. General background on the hypothalamic-pituitary-thyroid (HPT) axis. Crit. Rev. Toxicol. 37, 11–53 (2007).CAS 
    PubMed 

    Google Scholar 
    Björnsson, B. et al. Growth hormone endocrinology of salmonids: Regulatory mechanisms and mode of action. Fish Physiol. Biochem. 27, 227–242 (2002).
    Google Scholar 
    Trainor, B. C. & Hofmann, H. A. Somatostatin regulates aggressive behavior in an African cichlid fish. Endocrinology 147, 5119–5125 (2006).CAS 
    PubMed 

    Google Scholar 
    Doyon, C., Gilmour, K. M., Trudeau, V. L. & Moon, T. W. Corticotropin-releasing factor and neuropeptide Y mRNA levels are elevated in the preoptic area of socially subordinate rainbow trout. Gen. Comp. Endocrinol. 133, 260–271 (2003).CAS 
    PubMed 

    Google Scholar 
    du Sert, N. P. et al. Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0. PLoS Biol. 18, e3000411 (2020).
    Google Scholar 
    Triki, Z. & Bshary, R. Sex differences in the cognitive abilities of a sex-changing fish species Labroides dimidiatus. R. Soc. Open Sci. 8, 210239 (2021).PubMed 
    PubMed Central 

    Google Scholar 
    Grutter, A. S. Cleaner fish use tactile dancing behavior as a preconflict management strategy. Curr. Biol. 14, 1080–1083 (2004).CAS 
    PubMed 

    Google Scholar 
    Friard, O. & Gamba, M. BORIS: A free, versatile open-source event-logging software for video/audio coding and live observations. Methods Ecol. Evol. 7, 1325–1330 (2016).
    Google Scholar 
    Andrews, S. Babraham Bioinformatics—FastQC: A Quality Control Tool for High Throughput Sequence Data. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ (2010).Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114–2120 (2014).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Haas, B. J. et al. De novo transcript sequence reconstruction from RNA-seq using the trinity platform for reference generation and analysis. Nat. Protoc. 8, 1494–1512 (2013).CAS 
    PubMed 

    Google Scholar 
    Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–359 (2012).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Waterhouse, R. M. et al. BUSCO applications from quality assessments to gene prediction and phylogenomics. Mol. Biol. Evol. 35, 543–548 (2018).CAS 
    PubMed 

    Google Scholar 
    Götz, S. et al. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36, 3420–3435 (2008).PubMed 
    PubMed Central 

    Google Scholar 
    Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).PubMed 
    PubMed Central 

    Google Scholar 
    R Core Team. R: A Language and Environment for Statistical Computing https://www.R-project.org/ (R Foundation for Statistical Computing, 2021). More

  • in

    Behavioural and electrophysiological responses of Philaenus spumarius to odours from conspecifics

    Saponari, M., Boscia, D., Nigro, F. & Martelli, G. P. Identification of DNA sequences related to Xylella fastidiosa in oleander, almond and olive trees exhibiting leaf scorch symptoms in Apulia (Southern Italy). J. Plant Pathol. 95, 668 (2013).
    Google Scholar 
    Janse, J. D. & Obradovic, A. Xylella fastidiosa: Its biology, diagnosis, control and risks. J. Plant Pathol. 92, 35–48 (2010).
    Google Scholar 
    EPPO EPPO Global Database (available online). https://gd.eppo.int (2022)Article 

    Google Scholar 
    Bragard, C. et al. Update of the scientific opinion on the risks to plant health posed by Xylella fastidiosa in the EU territory. EFSA J. 17, 5665 (2019).
    Google Scholar 
    Nunney, L., Ortiz, B., Russell, S. A., Sánchez, R. R. & Stouthamer, R. The complex biogeography of the plant pathogen Xylella fastidiosa: Genetic evidence of introductions and subspecific introgression in central America. PLoS ONE 9, e112463 (2014).PubMed 
    PubMed Central 
    Article 
    ADS 
    CAS 

    Google Scholar 
    Sicard, A. et al. Introduction and adaptation of an emerging pathogen to olive trees in Italy. Microb. Genom. 7, 000735 (2021).CAS 
    PubMed Central 

    Google Scholar 
    Cornara, D. et al. Transmission of Xylella fastidiosa by naturally infected Philaenus spumarius (Hemiptera, Aphrophoridae) to different host plants. J. Appl. Entomol. 141, 80–87 (2017).Article 

    Google Scholar 
    Cornara, D. et al. Spittlebugs as vectors of Xylella fastidiosa in olive orchards in Italy. J. Pest Sci. 2004, 521–530 (2017).Article 

    Google Scholar 
    Bodino, N. et al. Phenology, seasonal abundance and stage-structure of spittlebug (Hemiptera: Aphrophoridae) populations in olive groves in Italy. Sci. Rep. 9, 17725 (2019).PubMed 
    PubMed Central 
    Article 
    ADS 
    CAS 

    Google Scholar 
    Di Serio, F. et al. Collection of data and information on biology and control of vectors of Xylella fastidiosa. EFSA Support. Publ. 16, 2 (2019).
    Google Scholar 
    Bayram, A., Salerno, G., Onofri, A. & Conti, E. Lethal and sublethal effects of preimaginal treatments with two pyrethroids on the life history of the egg parasitoid Telenomus busseolae. Biocontrol 55, 697–710 (2010).CAS 
    Article 

    Google Scholar 
    Saponari, M., Giampetruzzi, A., Loconsole, G., Boscia, D. & Saldarelli, P. Xylella fastidiosa in olive in Apulia: Where we stand. Phytopathology 109, 175–186 (2019).CAS 
    PubMed 
    Article 

    Google Scholar 
    Virant-Doberlet, M. & Cokl, A. Vibrational communication in insects. Neotrop. Entomol. 33, 121–134 (2004).Article 

    Google Scholar 
    Avosani, S. et al. Vibrational communication and mating behavior of the meadow spittlebug Philaenus spumarius. Entomol. Gen. 40, 307–321 (2020).Article 

    Google Scholar 
    Polajnar, J., Eriksson, A., Virant-Doberlet, M. & Mazzoni, V. Mating disruption of a grapevine pest using mechanical vibrations: From laboratory to the field. J. Pest Sci. 2004(89), 909–921 (2016).Article 

    Google Scholar 
    Boullis, A. & Verheggen, F. J. Chemical ecology of aphids (Hemiptera: Aphididae). In Biology and Ecology of Aphids (ed. Vilcinskas, A.) 181–208 (CRC Press, 2016). https://doi.org/10.1201/b19967-11.Chapter 

    Google Scholar 
    Ganassi, S. et al. Evidence of a female-produced sex pheromone in the European pear psylla Cacopsylla pyri. Bull. Insectol. 71, 57–64 (2018).
    Google Scholar 
    Tabata, J. & Ichiki, R. T. Sex pheromone of the cotton mealybug, Phenacoccus solenopsis, with an unusual cyclobutane structure. J. Chem. Ecol. 42, 1193–1200 (2016).CAS 
    PubMed 
    Article 

    Google Scholar 
    Millar, J. G. Pheromones of true bugs. Top. Curr. Chem. 240, 37–84 (2000).Article 
    CAS 

    Google Scholar 
    Khrimian, A. et al. Discovery of the aggregation pheromone of the brown marmorated stink bug (Halyomorpha halys) through the creation of stereoisomeric libraries of 1-Bisabolen-3-ols. J. Nat. Prod. 77, 1708–1717 (2014).CAS 
    PubMed 
    Article 

    Google Scholar 
    Borges, M., Blassioli-Moraes, M. C., Laumann, R. A. & Čokl, A. Suggestions for neotropic stink bug pest status and control. In Stink Bugs: Biorational Control Based on Communication Processes (eds Cokl, A. & Borges, M.) 246–254 (CRC Press, 2017). https://doi.org/10.1201/9781315120713.Chapter 

    Google Scholar 
    Ranieri, E., Ruschioni, S., Riolo, P., Isidoro, N. & Romani, R. Fine structure of antennal sensilla of the spittlebug Philaenus spumarius L. (Insecta: Hemiptera: Aphrophoridae). I. Chemoreceptors and thermo-/hygroreceptors. Arthropod Struct. Dev. 45, 432–439 (2016).PubMed 
    Article 

    Google Scholar 
    Germinara, G. S. et al. Antennal olfactory responses of adult meadow spittlebug, Philaenus spumarius, to volatile organic compounds (VOCs). PLoS ONE 12, e0190454 (2017).PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 
    Ganassi, S. et al. Electrophysiological and behavioural response of Philaenus spumarius to essential oils and aromatic plants. Sci. Rep. 10, 3114 (2020).CAS 
    PubMed 
    PubMed Central 
    Article 
    ADS 

    Google Scholar 
    Nault, L. R., Wood, T. K. & Goff, A. M. Treehopper (Membracidae) alarm pheromones. Nature 249, 387–388 (1974).CAS 
    PubMed 
    Article 
    ADS 

    Google Scholar 
    Chen, X. & Liang, A. P. Identification of a self-regulatory pheromone system that controls nymph aggregation behavior of rice spittlebug Callitettix versicolor. Front. Zool. 12, 10 (2015).PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 
    Liang, A. P. A new structure on the frons of male adults of the Asian rice spittlebug Callitettix versicolor (Hemiptera: Auchenorrhyncha: Cercopidae). Zootaxa 4801, 591–599 (2020).Article 

    Google Scholar 
    Cocroft, R. B. & Rodríguez, R. L. The behavioral ecology of insect vibrational communication. Bioscience 55, 323–334 (2005).Article 

    Google Scholar 
    Mazzoni, V. et al. Mating disruption by vibrational signals: state of the field and perspectives. In Biotremology: Studying Vibrational Behavior (eds Hill, P. S. M. et al.) 331–354 (Springer, Cham, 2019). https://doi.org/10.1007/978-3-030-22293-2_17.Chapter 

    Google Scholar 
    Bachmann, G. E. et al. Male sexual behavior and pheromone emission is enhanced by exposure to guava fruit volatiles in Anastrepha fraterculus. PLoS ONE 10, e0124250 (2015).PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 
    Frati, F., Salerno, G., Conti, E. & Bin, F. Role of the plant–conspecific complex in host location and intra-specific communication of Lygus rugulipennis. Physiol. Entomol. 33, 129–137 (2008).Article 

    Google Scholar 
    Frati, F. et al. Vicia faba–Lygus rugulipennis interactions: Induced plant volatiles and sex pheromone enhancement. J. Chem. Ecol. 35, 201–208 (2009).CAS 
    PubMed 
    Article 

    Google Scholar 
    Lubanga, U. K., Guédot, C., Percy, D. M. & Steinbauer, M. J. Semiochemical and vibrational cues and signals mediating mate finding and courtship in Psylloidea (Hemiptera): A synthesis. Insects 5, 577–595 (2014).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Borges, M. & Blassioli-Moraes, M. C. The semiochemistry of Pentatomidae. In Stink Bugs: Biorational Control Based on Communication Processes 95–124 (CRC Press, 2017). https://doi.org/10.1201/9781315120713.Chapter 

    Google Scholar 
    Yin, L. & Maschwitz, U. Sexual pheromone in the green house whitefly Trialeurodes vaporariorum Westw. Zeitschrift für Angew. Entomol. 95, 439–446 (1983).Article 

    Google Scholar 
    Dawson, G. W. et al. Identification of an aphid sex pheromone. Nature 325, 614–616 (1987).CAS 
    Article 
    ADS 

    Google Scholar 
    Zanardi, O. Z. et al. Putative sex pheromone of the Asian citrus psyllid, Diaphorina citri, breaks down into an attractant. Sci. Rep. 8, 455 (2018).PubMed 
    PubMed Central 
    Article 
    ADS 
    CAS 

    Google Scholar 
    Sevarika, M., di Giulio, A., Rondoni, G., Conti, E. & Romani, R. Morpho-functional analysis of the head glands in three Auchenorrhynca species and their possible biological significance. bioRxiv 03.03.482260 (2022).Mazzoni, V. et al. Use of substrate-borne vibrational signals to attract the brown marmorated stink bug Halyomorpha halys. J. Pest Sci. 2004, 1219–1229 (2017).Article 

    Google Scholar 
    Avosani, S., Franceschi, P., Ciolli, M., Verrastro, V. & Mazzoni, V. Vibrational playbacks and microscopy to study the signalling behaviour and female physiology of Philaenus spumarius. J. Appl. Entomol. https://doi.org/10.1111/jen.12874 (2021).Article 

    Google Scholar 
    Stewart, A. J. A. & Lees, D. R. Genetic control of colour polymorphism in spittlebugs (Philaenus spumarius) differs between isolated populations. Heredity (Edinb). 59, 445–448 (1987).Article 

    Google Scholar 
    Stewart, A. J. A. The colour/pattern polymorphism of Philaenus spumarius (L.) (Homoptera: Cercopidae) in England and Wales. Philos. Trans. R. Soc. B Biol. Sci. 351, 69–89 (1996).Article 
    ADS 

    Google Scholar 
    Moyal, P. et al. Origin and taxonomic status of the Palearctic population of the stem borer Sesamia nonagrioides (Lefèbvre) (Lepidoptera: Noctuidae). Biol. J. Linn. Soc. 103, 904–922 (2011).Article 

    Google Scholar 
    Glaser, N. et al. Differential expression of the chemosensory transcriptome in two populations of the stemborer Sesamia nonagrioides. Insect Biochem. Mol. Biol. 65, 28–34 (2015).CAS 
    PubMed 
    Article 

    Google Scholar 
    Bodino, N. et al. Spittlebugs of mediterranean olive groves: host-plant exploitation throughout the year. Insects 11, 130 (2020).PubMed Central 
    Article 

    Google Scholar 
    Cook, S. M., Khan, Z. R. & Pickett, J. A. The use of push-pull strategies in integrated pest management. Annu. Rev. Entomol. 52, 375–400 (2007).CAS 
    PubMed 
    Article 

    Google Scholar 
    Molinatto, G. et al. Biology and prevalence in Northern Italy of Verrallia aucta (Diptera, Pipunculidae), a parasitoid of Philaenus spumarius (Hemiptera, Aphrophoridae), the main vector of Xylella fastidiosa in Europe. Insects 11, 607 (2020).PubMed Central 
    Article 

    Google Scholar 
    Mesmin, X. et al. Ooctonus vulgatus (Hymenoptera, Mymaridae), a potential biocontrol agent to reduce populations of Philaenus spumarius (Hemiptera, Aphrophoridae) the main vector of Xylella fastidiosa in Europe. PeerJ 2020, e8591 (2020).Article 

    Google Scholar 
    Conti, E., Jones, W. A., Bin, F. & Vinson, S. B. Physical and chemical factors involved in host recognition behavior of Anaphes iole Girault, an egg parasitoid of Lygus hesperus knight (Hymenoptera: Mymaridae; Heteroptera: Miridae). Biol. Control 7, 10–16 (1996).Article 

    Google Scholar 
    Conti, E., Jones, W. A., Bin, F. & Vinson, S. B. Oviposition behavior of Anaphes iole, an egg parasitoid of Lygus hesperus (Hymenoptera: Mymaridae; Heteroptera: Miridae). Ann. Entomol. Soc. Am. 90, 91–101 (1997).Article 

    Google Scholar 
    Chiappini, E. et al. Role of volatile semiochemicals in host location by the egg parasitoid Anagrus breviphragma. Entomol. Exp. Appl. 144, 311–316 (2012).CAS 
    Article 

    Google Scholar 
    Conti, E. et al. Biological control of invasive stink bugs: review of global state and future prospects. Entomol. Exp. Appl. 169, 28–51 (2021).Article 

    Google Scholar 
    Rondoni, G. et al. Native egg parasitoids recorded from the invasive Halyomorpha halys successfully exploit volatiles emitted by the plant–herbivore complex. J. Pest Sci. 2004, 1087–1095 (2017).Article 

    Google Scholar 
    Rondoni, G., Ielo, F., Ricci, C. & Conti, E. Behavioural and physiological responses to prey-related cues reflect higher competitiveness of invasive vs native ladybirds. Sci. Rep. 7, 3716 (2017).PubMed 
    PubMed Central 
    Article 
    ADS 
    CAS 

    Google Scholar 
    Colazza, S. et al. Xbug, a video tracking and motion analysis system for LINUX. in XII International Entomophagous Insects Workshop. Pacific Grove, California (1999).De Cristofaro, A. et al. Electrophysiological responses of Cydia pomonella to codlemone and pear ester ethyl (E, Z)-2,4-decadienoate: Peripheral interactions in their perception and evidences for cells responding to both compounds. Bull. Insectol. 57, 137–144 (2004).
    Google Scholar 
    Raguso, R. A. & Light, D. M. Electroantennogram responses of male Sphinx perelegans hawkmoths to floral and ‘green-leaf volatiles’. Entomol. Exp. Appl. 86, 287–293 (1998).CAS 
    Article 

    Google Scholar 
    Pinheiro, J. C. & Bates, D. M. Mixed-Effects Models in S and S-PLUS (Springer, 2000). https://doi.org/10.1007/b98882.Book 
    MATH 

    Google Scholar 
    Rondoni, G., Onofri, A. & Ricci, C. Differential susceptibility in a specialised aphidophagous ladybird, Platynaspis luteorubra (Coleoptera: Coccinellidae), facing intraguild predation by exotic and native generalist predators. Biocontrol Sci. Technol. 22, 1334–1350 (2012).Article 

    Google Scholar 
    Zuur, A. F., Ieno, E. N., Walker, N. J., Saveliev, A. A. & Smith, G. M. Mixed Effects Models and Extensions in Ecology with R (Springer Verlag, 2009). https://doi.org/10.18637/jss.v032.b01.Book 
    MATH 

    Google Scholar 
    Bertoldi, V., Rondoni, G., Brodeur, J. & Conti, E. An egg parasitoid efficiently exploits cues from a coevolved host but not those from a novel host. Front. Physiol. 10, 746 (2019).PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Suh, E., Choe, D.-H., Saveer, A. M. & Zwiebel, L. J. Suboptimal larval habitats modulate oviposition of the malaria vector mosquito Anopheles coluzzii. PLoS ONE 11, e0149800 (2016).PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 
    R Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org (2020).Pinheiro, J., Bates, D., DebRoy, S., Sarkar, D., R Core Team. nlme: Linear and Nonlinear Mixed Effects Models (2020). R package version 3.1–148, https://CRAN.R-project.org/package=nlme.Venables, W. N. & Ripley, B. D. Modern Applied Statistics with S 4th edn. (Springer, 2002). https://doi.org/10.1007/978-0-387-21706-2.Book 
    MATH 

    Google Scholar 
    Wickham, H. ggplot2: Elegant Graphics for Data Analysis (Springer-Verlag, 2016).MATH 
    Book 

    Google Scholar 
    Lenth, R. emmeans: Estimated Marginal Means, aka Least-Squares Means (2019). R package version 1.3.2. Available online at: https://CRAN.R-project.org/package=emmeans. More

  • in

    Harnessing agricultural microbiomes for human pathogen control

    Dewey-Mattia D, Manikonda K, Hall AJ, Wise ME, Crowe SJ. Surveillance for foodborne disease outbreaks—United States, 2009–2015. MMWR Surveillance Summaries. 2018;67:1.PubMed Central 
    Article 

    Google Scholar 
    CDC. Ongoing Multistate Outbreak of Escherichia coli serotype O157:H7 Infections Associated With Consumption of Fresh Spinach – United States. JAMA. 2006;296:2195–6.Article 

    Google Scholar 
    Jay MT, Cooley M, Carychao D, Wiscomb GW, Sweitzer RA, Crawford-Miksza L, et al. Escherichia coli O157: H7 in feral swine near spinach fields and cattle, central California coast. Emerg Infect Dis. 2007;13:1908.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Cooley M, Carychao D, Crawford-Miksza L, Jay MT, Myers C, Rose C, et al. Incidence and tracking of Escherichia coli O157: H7 in a major produce production region in California. PLoS One. 2007;2:e1159.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Mukherjee A, Mammel MK, LeClerc JE, Cebula TA. Altered Utilization of N-Acetyl-d-Galactosamine by Escherichia coli O157:H7 from the 2006 Spinach Outbreak. J Bacteriol. 2008;190:1710–7.CAS 
    PubMed 
    Article 

    Google Scholar 
    Macarisin D, Patel J, Bauchan G, Giron JA, Sharma VK. Role of Curli and Cellulose Expression in Adherence of Escherichia coli O157:H7 to Spinach Leaves. Foodborne Pathog Dis. 2012;9:160–7.CAS 
    PubMed 
    Article 

    Google Scholar 
    Carter MQ, Louie JW, Huynh S, Parker CT. Natural rpoS mutations contribute to population heterogeneity in Escherichia coli O157:H7 strains linked to the 2006 US spinach-associated outbreak. Food Microbiol. 2014;44:108–18.CAS 
    PubMed 
    Article 

    Google Scholar 
    Park S, Navratil S, Gregory A, Bauer A, Srinath I, Szonyi B, et al. Farm management, environment, and weather factors jointly affect the probability of spinach contamination by generic Escherichia coli at the preharvest stage. Appl Environ Microbiol. 2014;80:2504–15.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    CDC. Investigation Details. 2021 [updated 2021; cited]; Available from: https://www.cdc.gov/ecoli/2021/o157h7-02-21/details.html.Karp DS, Gennet S, Kilonzo C, Partyka M, Chaumont N, Atwill ER, et al. Comanaging fresh produce for nature conservation and food safety. Proc Natl Acad Sci. 2015;112:11126–31.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Jones MS, Fu Z, Reganold JP, Karp DS, Besser TE, Tylianakis JM, et al. Organic farming promotes biotic resistance to foodborne human pathogens. J Appl Ecol. 2019;56:1117–27.Article 

    Google Scholar 
    Holden N, Pritchard L, Toth I. Colonization outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria. FEMs Microbiol Rev. 2009;33:689–703.CAS 
    PubMed 
    Article 

    Google Scholar 
    Holden N. You are what you can find to eat: bacterial metabolism in the rhizosphere. Curr Issues Mol Biol. 2019;30:1–16.Coulthurst S. The Type VI secretion system: a versatile bacterial weapon. Microbiology. 2019;165:503–15.CAS 
    PubMed 
    Article 

    Google Scholar 
    Liao H, Li X, Bai Y, Cui P, Wen C, Liu C, et al. Herbicide selection promotes antibiotic resistance in soil microbiomes. Mol Biol Evolut. 2021;38:2337–50.CAS 
    Article 

    Google Scholar 
    Yaron S, Römling U. Biofilm formation by enteric pathogens and its role in plant colonization and persistence. Microb Biotechnol. 2014;7:496–516.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Wright KM, Chapman S, McGeachy K, Humphris S, Campbell E, Toth IK, et al. The endophytic lifestyle of Escherichia coli O157:H7: quantification and internal localization in roots. Phytopathology. 2013;103:333–40.PubMed 
    Article 

    Google Scholar 
    Dinu L-D, Bach S. Induction of viable but nonculturable Escherichia coli O157:H7 in the phyllosphere of lettuce: a food safety risk factor. Appl Environ Microbiol. 2011;77:8295–302.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Crozier L, Marshall J, Holmes A, Wright KM, Rossez Y, Merget B, et al. The role of l-arabinose metabolism for Escherichia coli O157:H7 in edible plants. Microbiology. 2021;167:1–12.Franz E, Semenov AV, Van Bruggen AHC. Modelling the contamination of lettuce with Escherichia coli O157:H7 from manure-amended soil and the effect of intervention strategies. J Appl Microbiol. 2008;105:1569–84.CAS 
    PubMed 
    Article 

    Google Scholar 
    Gu G, Hu J, Cevallos-Cevallos JM, Richardson SM, Bartz JA, van Bruggen AHC. Internal colonization of salmonella enterica serovar typhimurium in tomato plants. PLoS One. 2011;6:e27340.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, et al. Whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts. Front Microbiol. 2016;12:1088. 7
    Google Scholar 
    Jacob C, Melotto M. Human pathogen colonization of lettuce dependent upon plant genotype and defense response activation. Front Plant Sci. 2020;30:10.
    Google Scholar 
    Launders N, Locking ME, Hanson M, Willshaw G, Charlett A, Salmon R, et al. A large Great Britain-wide outbreak of STEC O157 phage type 8 linked to handling of raw leeks and potatoes. Epidemiol Infect. 2016;144:171–81.CAS 
    PubMed 
    Article 

    Google Scholar 
    Berendsen RL, Pieterse CMJ, Bakker PAHM. The rhizosphere microbiome and plant health. Trends Plant Sci. 2012;17:478–86.CAS 
    PubMed 
    Article 

    Google Scholar 
    Schenkel D, Deveau A, Niimi J, Mariotte P, Vitra A, Meisser M, et al. Linking soil’s volatilome to microbes and plant roots highlights the importance of microbes as emitters of belowground volatile signals. Environ Microbiol. 2019;21:3313–27.Article 

    Google Scholar 
    Teixeira PJPL, Colaianni NR, Fitzpatrick CR, Dangl JL. Beyond pathogens: microbiota interactions with the plant immune system. Curr Opin Microbiol. 2019;49:7–17.CAS 
    PubMed 
    Article 

    Google Scholar 
    Darlison J, Mogren L, Rosberg A-K, Grudén M, Minet A, Liné C, et al. Leaf mineral content govern microbial community structure in the phyllosphere of spinach (Spinacia oleracea) and rocket (Diplotaxis tenuifolia). Sci Total Environ. 2019;675:501–12.CAS 
    PubMed 
    Article 

    Google Scholar 
    Lopez-Velasco G, Carder PA, Welbaum GE, Ponder MA. Diversity of the spinach (Spinacia oleracea) spermosphere and phyllosphere bacterial communities. FEMS Microbiol Lett. 2013;346:146–54.CAS 
    PubMed 
    Article 

    Google Scholar 
    Daniel S, Goldlust K, Quebre V, Shen M, Lesterlin C, Bouet J-Y, et al. Vertical and Horizontal Transmission of ESBL Plasmid from Escherichia coli O104:H4. Genes. 2020;11:1207.CAS 
    PubMed Central 
    Article 

    Google Scholar 
    Orgiazzi A, Bardgett RD, Barrios E, Behan-Pelletier V, Briones MJI, Chotte J-L, et al. Global soil biodiversity atlas. European Commission; 2016.Vorholt JA, Vogel C, Carlström CI, Müller DB. Establishing causality: opportunities of synthetic communities for plant microbiome research. Cell Host Microbe. 2017;22:142–55.CAS 
    PubMed 
    Article 

    Google Scholar 
    Fierer N. Embracing the unknown: disentangling the complexities of the soil microbiome. Nat Rev Microbiol. 2017;15:579–90.CAS 
    PubMed 
    Article 

    Google Scholar 
    Latz E, Eisenhauer N, Rall BC, Scheu S, Jousset A. Unravelling linkages between plant community composition and the pathogen-suppressive potential of soils. Scientific Reports. 2016;6:23584.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Lapsansky ER, Milroy AM, Andales MJ, Vivanco JM. Soil memory as a potential mechanism for encouraging sustainable plant health and productivity. Curr Opin Biotechnol. 2016;38:137–42.CAS 
    PubMed 
    Article 

    Google Scholar 
    Chapelle E, Mendes R, Bakker PAHM, Raaijmakers JM. Fungal invasion of the rhizosphere microbiome. ISME Journal. 2016;10:265–8.CAS 
    PubMed 
    Article 

    Google Scholar 
    Schikora A, Jackson RW, Van Overbeek L, Holden N. Editorial: plants as alternative hosts for human and animal pathogens – second edition. Front Microbiol. [Editorial] 2020;14:11.
    Google Scholar 
    Lebeis SL. Greater than the sum of their parts: characterizing plant microbiomes at the community-level. Curr Opin Plant Biol. 2015;24:82–6.CAS 
    PubMed 
    Article 

    Google Scholar 
    Kinnunen M, Dechesne A, Proctor C, Hammes F, Johnson D, Quintela-Baluja M, et al. A conceptual framework for invasion in microbial communities. ISME J. 2016;10:2773–9.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Uyttendaele M, Jaykus LA, Amoah P, Chiodini A, Cunliffe D, Jacxsens L, et al. Microbial hazards in irrigation water: standards, norms, and testing to manage use of water in fresh produce primary production. Compr Rev Food Sci Food Saf. 2015;14:336–56.Article 

    Google Scholar 
    Litchman E. Invisible invaders: non‐pathogenic invasive microbes in aquatic and terrestrial ecosystems. Ecol Lett. 2010;13:1560–72.PubMed 
    Article 

    Google Scholar 
    Blackburn TM, Lockwood JL, Cassey P. The influence of numbers on invasion success. Mol Ecol. 2015;24:1942–53.PubMed 
    Article 

    Google Scholar 
    Hawkes CV, Connor EW. Translating Phytobiomes from Theory to Practice: Ecological and Evolutionary Considerations. Phytobiomes. Journal. 2017;1:57–69.
    Google Scholar 
    Meyer KM, Leveau JH. Microbiology of the phyllosphere: a playground for testing ecological concepts. Oecologia. 2012;168:621–9.PubMed 
    Article 

    Google Scholar 
    Jousset A, Schulz W, Scheu S, Eisenhauer N. Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities. ISME J. 2011;5:1108–14.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Martínez-Vaz BM, Fink RC, Diez-Gonzalez F, Sadowsky MJ. Enteric pathogen-plant interactions: molecular connections leading to colonization and growth and implications for food safety. Microbes Environ. 2014;29:123–35.Alegbeleye OO, Singleton I, Sant’Ana AS. Sources and contamination routes of microbial pathogens to fresh produce during field cultivation: a review. Food Microbiol. 2018;73:177–208.PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Johannessen GS, Bengtsson GB, Heier BT, Bredholt S, Wasteson Y, Rørvik LM. Potential uptake of Escherichia coli O157: H7 from organic manure into crisphead lettuce. Appl Environ Microbiol. 2005;71:2221–5.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Fett WF. Inhibition of Salmonella enterica by plant-associated pseudomonads in vitro and on sprouting alfalfa seed. J Food Prot. 2006;69:719–28.PubMed 
    Article 

    Google Scholar 
    Brandl MT, Cox CE, Teplitski M. Salmonella interactions with plants and their associated microbiota. Phytopathology. 2013;103:316–25.PubMed 
    Article 

    Google Scholar 
    Thao S, Brandl MT, Carter MQ. Enhanced formation of shiga toxin-producing Escherichia coli persister variants in environments relevant to leafy greens production. Food Microbiol. 2019;84:103241.PubMed 
    Article 

    Google Scholar 
    Devarajan N, McGarvey JA, Scow K, Jones MS, Lee S, Samaddar S, et al. Cascading effects of composts and cover crops on soil chemistry, bacterial communities and the survival of foodborne pathogens. J Appl Microbiol. 2021;131:1564–77.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Williams TR, Moyne A-L, Harris LJ, Marco ML. Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere. PLoS One. 2013;8:e68642.CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 
    Zhang Y, Jewett C, Gilley J, Bartelt-Hunt SL, Snow DD, Hodges L, et al. Microbial communities in the rhizosphere and the root of lettuce as affected by Salmonella-contaminated irrigation water. FEMS Microbiol Ecol. 2018;94:fiy135.CAS 
    PubMed 
    Article 

    Google Scholar 
    Jarvis KG, White JR, Grim CJ, Ewing L, Ottesen AR, Beaubrun JJ-G, et al. Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing. BMC Microbiol. 2015;15:1–13.CAS 
    Article 

    Google Scholar 
    Allard SM, Callahan MT, Bui A, Ferelli AMC, Chopyk J, Chattopadhyay S, et al. Creek to rable: tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops. Sci Total Environ. 2019;666:461–71.CAS 
    PubMed 
    Article 

    Google Scholar 
    Gu G, Yin H-B, Ottesen A, Bolten S, Patel J, Rideout S, et al. Microbiomes in ground water and alternative irrigation water, and spinach microbiomes impacted by irrigation with different types of water. Phytobiomes J. 2019;3:137–47.Article 

    Google Scholar 
    Obayomi O, Edelstein M, Safi J, Mihiret M, Ghazaryan L, Vonshak A, et al. The combined effects of treated wastewater irrigation and plastic mulch cover on soil and crop microbial communities. Biology Fertility Soils. 2020;56:729–42.CAS 
    Article 

    Google Scholar 
    Truchado P, Gil MI, Suslow T, Allende A. Impact of chlorine dioxide disinfection of irrigation water on the epiphytic bacterial community of baby spinach and underlying soil. PLoS One. 2018;13:e0199291.PubMed 
    PubMed Central 
    Article 

    Google Scholar  More

  • in

    Distribution of invasive versus native whitefly species and their pyrethroid knock-down resistance allele in a context of interspecific hybridization

    Pimentel, D. et al. Economic and environmental threats of alien plant, animal, and microbe invasions. Agric. Ecosyst. Environ. 84, 1–20 (2001).
    Google Scholar 
    Wilcove, D. S. & Chen, L. Y. Management costs for endangered species. Conserv. Biol. 12, 1405–1407 (1998).
    Google Scholar 
    Singer, M. C., Wee, B., Hawkins, S. & Butcher, M. Rapid natural and anthropogenic diet evolution: three examples from checkerspot butterflies in The Evolutionary Biology of Herbivorous Insects: Speciation, Specialization and Radiation (ed. Tilmon, K. J.). 311–324. (University of California Press, 2008).Ruesink, J. L., Parker, I. M., Groom, M. J. & Kareiva, P. M. Reducing the risks of nonindigenous species introductions. Bioscience 45, 465–477 (1995).
    Google Scholar 
    Rhymer, J. M. & Simberloff, D. Extinction by hybridization and introgression. Annu. Rev. Ecol. Syst. 27, 83–109 (1996).
    Google Scholar 
    Vitousek, P. M., D’Antonio, C. M., Loope, L. L. & Westbrooks, R. Biological invasions as global environmental change. Am. Sci. 84, 468–478 (1996).ADS 

    Google Scholar 
    Daszak, P., Cunningham, A. A. & Hyatt, A. D. Emerging infectious diseases of wildlife-threats to biodiversity and human health. Science 287, 443–449 (2000).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Lockwood, J. L., Cassey, P. & Blackburn, T. The role of propagule pressure in explaining species invasions. Trends Ecol. Evol. 20, 223–228 (2005).PubMed 

    Google Scholar 
    Blackburn, T. M. & Jeschke, J. M. Invasion success and threat status: two sides of a different coin?. Ecography 32, 83–88 (2009).
    Google Scholar 
    Facon, B. et al. A general eco-evolutionary framework for understanding bioinvasions. Trends Ecol. Evol. 21, 130–135 (2006).PubMed 

    Google Scholar 
    Ellstrand, N. C. & Schierenbeck, K. A. Hybridization as a stimulus for the evolution of invasiveness in plants?. Proc. Natl. Acad. Sci. USA 97, 7043–7050 (2000).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Verhoeven, K. J. F., Macel, M., Wolfe, L. M. & Biere, A. Population admixture, biological invasions and the balance between local adaptation and inbreeding depression. Proc. R. Soc. B-Biol. Sci. 278, 2–8 (2011).
    Google Scholar 
    Brevik, K., Lindström, L., McKay, S. D. & Chen, Y. H. Transgenerational effects of insecticides-implications for rapid pest evolution in agroecosystems. Curr. Opin. Insect Sci. 26, 34–40 (2018).PubMed 

    Google Scholar 
    Kirk, W. D. J. & Terry, L. I. The spread of the western flower thrips Frankliniella occidentalis (Pergande). Agr. Forest. Entomol. 5, 301–310 (2003).
    Google Scholar 
    Piiroinen, S., Lyytinen, A. & Lindström, L. Stress for invasion success? Temperature stress of preceding generations modifies the response to insecticide stress in an invasive pest insect. Evol. Appl. 6, 313–323 (2013).PubMed 

    Google Scholar 
    Margus, A. et al. Sublethal pyrethroid insecticide exposure carries positive fitness effects over generations in a pest insect. Sci. Rep. 9, 1–10 (2019).CAS 

    Google Scholar 
    Vais, H., Williamson, M. S., Devonshire, A. L. & Usherwood, P. N. R. The molecular interactions of pyrethroid insecticides with insect and mammalian sodium channels. Pest Manag. Sci. 57, 877–888 (2001).CAS 
    PubMed 

    Google Scholar 
    Smith, L. B., Kasai, S. & Scott, J. G. Voltage-sensitive sodium channel mutations S989P+ V1016G in Aedes aegypti confer variable resistance to pyrethroids, DDT and oxadiazines. Pest Manag. Sci. 74, 737–745 (2018).CAS 
    PubMed 

    Google Scholar 
    Guerrero, F. D., Jamroz, R. C., Kammlah, D. & Kunz, S. E. Toxicological and molecular characterization of pyrethroid-resistant horn flies, Haematobia irritans: Identification of kdr and super-kdr point mutations. Insect Biochem. Mol. 27, 745–755 (1997).CAS 

    Google Scholar 
    Morin, S. et al. Mutations in the Bemisia tabaci para sodium channel gene associated with resistance to a pyrethroid plus organophosphate mixture. Insect Biochem. Mol. 32, 1781–1791 (2002).CAS 

    Google Scholar 
    Kasai, S. et al. First detection of a putative knockdown resistance gene in major mosquito vector, Aedes albopictus. Jpn. J. Infect. Dis. 64, 217–221 (2011).CAS 
    PubMed 

    Google Scholar 
    Brito, L. P. et al. Assessing the effects of Aedes aegypti kdr mutations on pyrethroid resistance and its fitness cost. PLoS ONE 8, e60678 (2013).ADS 
    MathSciNet 

    Google Scholar 
    De Barro, P. J., Liu, S. S., Boykin, L. M. & Dinsdale, A. B. Bemisia tabaci: A statement of species status. Annu. Rev. Entomol. 56, 1–19 (2011).PubMed 

    Google Scholar 
    Perring, T. M. The Bemisia tabaci species complex. Crop Prot. 20, 725–737 (2001).
    Google Scholar 
    Navas-Castillo, J., Fiallo-Olivé, E. & Sánchez-Campos, S. Emerging virus diseases transmitted by whiteflies. Annu. Rev. Phytopathol. 49, 219–248 (2011).CAS 
    PubMed 

    Google Scholar 
    Mugerwa, H. et al. African ancestry of new world, Bemisia tabaci-whitefly species. Sci. Rep. 8, 2734 (2018).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Kanakala, S. & Ghanim, M. Global genetic diversity and geographical distribution of Bemisia tabaci and its bacterial endosymbionts. PLoS ONE 14, e0213946 (2019).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hu, J. et al. New putative cryptic species detection and genetic network analysis of Bemisia tabaci (Hemiptera: Aleyrodidae) in China based on mitochondrial COI sequences. Mitochondr. DNA Part DNA Mapp. Seq. Anal. 29, 474–484 (2018).Vyskocilova, S., Tay, W. T., van Brunschot, S., Seal, S. & Colvin, J. An integrative approach to discovering cryptic species within the Bemisia tabaci whitefly species complex. Sci. Rep. 8, 10886 (2018).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Cheek, S. & Macdonald, O. Statutory controls to prevent the establishment of Bemisia tabaci in the United Kingdom. Pestic. Sci. 42, 135–137 (1994).CAS 

    Google Scholar 
    Horowitz, A. R. et al. Biotype Q of Bemisia tabaci identified in Israel. Phytoparasitica 31, 94–98 (2003).
    Google Scholar 
    Basit, M. Status of insecticide resistance in Bemisia tabaci: Resistance, cross-resistance, stability of resistance, genetics and fitness costs. Phytoparasitica 47, 207–225 (2019).CAS 

    Google Scholar 
    Horowitz, A. R., Kontsedalov, S., Khasdan, V. & Ishaaya, I. Biotypes B and Q of Bemisia tabaci and their relevance to neonicotinoid and pyriproxyfen resistance. Arch. Insect Biochem. Physiol. 58, 216–225 (2005).CAS 
    PubMed 

    Google Scholar 
    Horowitz, A. R., Ghanim, M., Roditakis, E., Nauen, R. & Ishaaya, I. Insecticide resistance and its management in Bemisia tabaci species. J. Pest. Sci. 93, 893–910 (2020).
    Google Scholar 
    Delatte, H. et al. A new silverleaf-inducing biotype Ms of Bemisia tabaci (Hemiptera: Aleyrodidae) indigenous to the islands of the south-west Indian Ocean. B. Entomol. Res. 95, 29–35 (2005).CAS 

    Google Scholar 
    Peterschmitt, M. et al. First report of tomato yellow leaf curl virus in Réunion Island. Plant Dis. 83, 303 (1999).CAS 
    PubMed 

    Google Scholar 
    Delatte, H., Lett, J.-M., Lefeuvre, P., Reynaud, B. & Peterschmitt, M. An insular environment before and after TYLCV introduction in Tomato Yellow Leaf Curl Virus Disease: Management, Molecular Biology, Breeding for Resistance (ed. Czosnek, H.). 13–23. (Springer, 2007).Delatte, H. et al. Microsatellites reveal extensive geographical, ecological and genetic contacts between invasive and indigenous whitefly biotypes in an insular environment. Genet. Res. 87, 109–124 (2006).CAS 
    PubMed 

    Google Scholar 
    Delatte, H. et al. Genetic diversity, geographical range and origin of Bemisia tabaci (Hemiptera: Aleyrodidae) Indian Ocean Ms. B. Entomol. Res. 101, 487–497 (2011).CAS 

    Google Scholar 
    Thierry, M. et al. Mitochondrial, nuclear, and endosymbiotic diversity of two recently introduced populations of the invasive Bemisia tabaci MED species in La Réunion. Insect. Conserv. Divers. 8, 71–80 (2015).
    Google Scholar 
    Tsagkarakou, A. et al. Molecular diagnostics for detecting pyrethroid and organophosphate resistance mutations in the Q biotype of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae). Pestic. Biochem. Phys. 94, 49–54 (2009).CAS 

    Google Scholar 
    Delatte, H. et al. Differential invasion success among biotypes: case of Bemisia tabaci. Biol. Invasions 11, 1059–1070 (2009).
    Google Scholar 
    Chu, D., Tao, Y.-L., Zhang, Y.-J., Wan, F.-H. & Brown, J. K. Effects of host, temperature and relative humidity on competitive displacement of two invasive Bemisia tabaci biotypes [Q and B]. Insect Sci. 19, 595–603 (2012).
    Google Scholar 
    Chu, D., Wan, F. H., Zhang, Y. J. & Brown, J. K. Change in the biotype composition of Bemisia tabaci in Shandong Province of China from 2005 to 2008. Environ. Entomol. 39, 1028–1036 (2010).PubMed 

    Google Scholar 
    Pascual, S. & Callejas, C. Intra- and interspecific competition between biotypes B and Q of Bemisia tabaci (Hemiptera: Aleyrodidae) from Spain. B. Entomol. Res. 94, 369–375 (2004).CAS 

    Google Scholar 
    Pan, H. et al. Insecticides promote viral outbreaks by altering herbivore competition. Ecol. Appl. 25, 1585–1595 (2015).PubMed 

    Google Scholar 
    Shatters, R. G. et al. Population genetics of Bemisia tabaci biotypes B and Q from the Mediterranean and the U.S. inferred using microsatellite markers. in Fourth International Bemisia Workshop International Whitefly Genomics Workshop (3–8 December 2006). (Duck Key: USDA/ARS US Horticultural Research Laboratory, 2006).McKenzie, C. L. & Osborne, L. S. Bemisia tabaci MED (Q biotype) (Hemiptera: Aleyrodidae) in Florida is on the move to residential landscapes and may impact open-field agriculture. Fla. Entomol. 100, 481–484 (2017).
    Google Scholar 
    Guo, X.-J. et al. Diversity and genetic differentiation of the whitefly Bemisia tabaci species complex in China based on mtCOI and cDNA-AFLP analysis. J. Integr. Agr. 11, 206–214 (2012).CAS 

    Google Scholar 
    Prabhaker, N., Castle, S., Henneberry, T. J. & Toscano, N. C. Assessment of cross-resistance potential to neonicotinoid insecticides in Bemisia tabaci (Hemiptera: Aleyrodidae). B. Entomol. Res. 95, 535–543 (2005).CAS 

    Google Scholar 
    Taquet, A. et al. Insecticide resistance and fitness cost in Bemisia tabaci (Hemiptera: Aleyrodidae) invasive and resident species in La Réunion Island. Pest Manag. Sci. 76, 1235–1244 (2020).CAS 
    PubMed 

    Google Scholar 
    Elfekih, S. et al. Genome-wide analyses of the Bemisia tabaci species complex reveal contrasting patterns of admixture and complex demographic histories. PLoS ONE 13, e0190555 (2018).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Thierry, M. et al. Symbiont diversity and non-random hybridization among indigenous (Ms) and invasive (B) biotypes of Bemisia tabaci. Mol. Ecol. 20, 2172–2187 (2011).CAS 
    PubMed 

    Google Scholar 
    Gauthier, N. et al. Genetic structure of Bemisia tabaci Med populations from home-range countries, inferred by nuclear and cytoplasmic markers: impact on the distribution of the insecticide resistance genes. Pest Manag. Sci. 70, 1477–1491 (2014).CAS 
    PubMed 

    Google Scholar 
    Alon, M. et al. Multiple origins of pyrethroid resistance in sympatric biotypes of Bemisia tabaci (Hemiptera: Aleyrodidae). Insect Biochem. Mol. 36, 71–79 (2006).CAS 

    Google Scholar 
    Vassiliou, V. et al. Insecticide resistance in Bemisia tabaci from Cyprus. Insect Sci. 18, 30–39 (2011).CAS 

    Google Scholar 
    Gnankiné, O., Hema, O., Namountougou, M., Mouton, L. & Vavre, F. Impact of pest management practices on the frequency of insecticide resistance alleles in Bemisia tabaci (Hemiptera: Aleyrodidae) populations in three countries of West Africa. Crop Prot. 104, 86–91 (2018).
    Google Scholar 
    Cahill, M., Byrne, F. J., Gorman, K., Denholm, I. & Devonshire, A. L. Pyrethroid and organophosphate resistance in the tobacco whitefly Bemisia tabaci (Homoptera: Aleyrodidae). B. Entomol. Res. 85, 181–187 (1995).CAS 

    Google Scholar 
    Weill, M. et al. Insecticide resistance: A silent base prediction. Curr. Biol. 14, 552–553 (2004).
    Google Scholar 
    Bouvier, J.-C. et al. Deltamethrin resistance in the codling moth (Lepidoptera: Tortricidae): Inheritance and number of genes involved. Heredity (Edinb) 87, 456–462 (2001).CAS 

    Google Scholar 
    Calvert, L. A. et al. Morphological and mitochondrial DNA marker analyses of whiteflies (Homoptera: Aleyrodidae) colonizing cassava and beans in Colombia. Ann. Entomol. Soc. Am. 94, 512–519 (2001).CAS 

    Google Scholar 
    Tocko-Marabena, B. K. et al. Genetic diversity of Bemisia tabaci species colonizing cassava in Central African Republic characterized by analysis of cytochrome c oxidase subunit I. PLoS ONE 12, e0182749 (2017).PubMed 
    PubMed Central 

    Google Scholar 
    Ally, H. M. et al. What has changed in the outbreaking populations of the severe crop pest whitefly species in cassava in two decades?. Sci. Rep. 9, 1–13 (2019).CAS 

    Google Scholar 
    Kearse, M. et al. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647–1649 (2012).PubMed 
    PubMed Central 

    Google Scholar 
    Van Oosterhout, C., Hutchinson, W. F., Wills, D. P. M. & Shipley, P. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4, 535–538 (2004).
    Google Scholar 
    Weir, B. S. & Cockerham, C. C. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358–1370 (1984).CAS 
    PubMed 

    Google Scholar 
    Raymond, M. GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. J. Hered. 86, 248–249 (1995).
    Google Scholar 
    Piry, S., Luikart, G. & Cornuet, J. M. BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90, 502–503 (1999).
    Google Scholar 
    Pritchard, J. K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol. Ecol. 14, 2611–2620 (2005).CAS 
    PubMed 

    Google Scholar 
    Earl, D. A. & VonHoldt, B. M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4, 359–361 (2012).
    Google Scholar 
    R Core Team. R: A Language and Environment for Statistical Computing. https://www.r-project.org/ (2020).Jombart, T. & Ahmed, I. Adegenet 1.3–1: New tools for the analysis of genome-wide SNP data. Bioinformatics 27, 3070–3071 (2011).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Kopelman, N. M., Mayzel, J., Jakobsson, M., Rosenberg, N. A. & Mayrose, I. Clumpak: A program for identifying clustering modes and packaging population structure inferences across K. Mol. Ecol. Resour. 15, 1179–1191 (2015).CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Slatkin, M. Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47, 264–279 (1993).PubMed 

    Google Scholar 
    Vähä, J.-P. & Primmer, C. R. Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci. Mol. Ecol. 15, 63–72 (2006).PubMed 

    Google Scholar  More

  • in

    Searching the web builds fuller picture of arachnid trade

    Our online sampling methods largely follow protocols detailed in3,4, though we limited our online searches to online shops and did not extend to social media. Large portions of code are directly re-used from those papers, although we provide modified code with this paper additionally. For keyword searches and data review we used R v.4.1.149 via RStudio v.1.4.110350, and made wide use of functions supplied by the anytime v.0.3.951, assertthat v.0.2.152, dplyr v.1.0.753, glue v.1.4.254, lazyeval v.0.2.255, lubridate v.1.7.1056, magrittr v.2.0.157, 17urr v.0.3.458, reshape2 v.1.4.459, stringr v.1.4.060, and tidyr v.1.1.361 other specific package uses are listed during the methods description. We used the grateful v.0.0.362 package to generate citations for all R packages. Code and data used to produce figures and summary data are also available at: 10.5281/zenodo.5758541.Website sampling and searchWe searched for contemporary arachnid selling websites using the Google search engine and targeted nine languages (English, French, Spanish, German, Portuguese, Japanese, Czech, Polish, Russian). Terms were created to be inclusive, so only spiders and scorpions were on the initial search string as specialist groups may exist for either, but are unlikely for smaller arachnid groups, which were often listed under “other” in online shops. Terms were selected to be encompassing so that any sites listing variants of “spider” or mentioning arachnid in the chosen language were selected. Whilst some groups such as tarantulas are more popular as pets such sites will not omit translations of spider and should also be captured in the search, hence Terraristika (as was shown in previous analysis of amphibians and reptiles) listed the greatest number of species, despite not being a specialist site. We used the localised versions of each of these languages with the following Boolean search strings:

    English: (Spider OR scorpion OR arachnid) AND for sale

    French: (Araignée OR scorpion OR arachnide) AND à vendre

    Spanish: (Araña OR escorpión OR arácnido) AND en venta

    German: (Arachnoid OR Spinne OR Skorpion OR Spinnentier) AND zum Verkauf

    Portuguese: (Aranha OR escorpião OR aracnídeo) AND à venda

    Japanese: (クモ OR サソリ OR クモ型類) AND (中村彰宏 OR 販売)

    Czech: (Pavouk OR Štír OR pavoukovec) AND prodej

    Polish: (Pająk OR Skorpion OR pajęczak) AND sprzedaż

    Russian: Продажа пауков OR скорпионов

    We undertook these searches in a private window in the Firefox v.92.0.1 browser63 to limit the impacts of search history. These keywords were used to identify sites which may be selling arachnids, which could then be checked before a comprehensive scrape.For each language, we downloaded the first 15 pages of results between 2021-06-06 and 2021-07-07 (or fewer in the result that the search returned fewer than 15 pages: German 8 pages and Spanish 14 pages). This resulted in ~1270 sites that could potentially be selling arachnids. After removing duplicates and simplifying the URLs (so all ended in.com,.org,. co.uk etc.; Code S1), we reviewed each site for the following criteria (2021-07-31 to 2021-08-02): whether they sell arachnids, the type of site (trade or classified ads), the order arachnids were listed in (e.g., date or alphabetical), the best search method for gather species appearances (see below for hierarchical search methods), a refined target URL listing species inventory, the number of pages within the website potentially required to cycle through, and if the search method required a crawl, whether the site explicitly forbade crawling data collection and whether we could limit the crawl’s scope with a filter on downstream URLs. Finally, we assigned all suitable sites with a unique ID. We have made a censored version of the website review results available in Data S1. In addition to the systematic search for arachnid trade, we added 43 websites discovered ad hoc from links on previously discovered sites (many listed online shops), those listed in other journal articles on invertebrate trade (i.e.,6) or from discussion with informed colleagues (between 2021-08-07 and 2021-09-15). After reviewing these ad hoc sites (2021-08-07 to 2021-09-15), we had a combined total of 111 sites to attempt to search for the appearance of arachnid species.Our searches of websites took one of five forms (Code S2), designed to minimise server load and limit the number of irrelevant pages searched, while ensuring we captured the pages listing species. We prioritised using the lowest/simplest search method possible for each site.Single page or PDFFor websites that listed their entire arachnid stock on a single page, we retrieved that single page using the downloader v.0.4 package64. In cases where the inventory was listed in a PDF, we manually downloaded the PDF and used pdftools v.3.0.165 to assess the text.CycleSome websites had large stocklists split across multiple pages that could be accessed sequentially. In these cases, we used the downloader v.0.4 package64 to retrieve each page, as we cycled from page 1 to the terminal page identified during the website review stage. Two sites required a slight modification to the page cycling process: as the sequential pages were not defined by pages, but by the number of adverts displayed. In these instances, we cycled through all adverts 20 adverts at a time (i.e., matching the default number displayed at a time by the site). For all cycling we implemented a 10 s cooldown between requests to limit server load.Level 1 crawlFor websites that split their stock between multiple pages, but with no sequential ordering, we used a level 1 crawl, via the Rcrawler v.0.1.9.1 package66 to access them all. For example, where a site had an “arachnid for sale” page, but full species names existed only in linked pages (e.g., “tarantulas”, “scorpions”).Cycle and level 1 crawlSome websites required a combined approach, where stock was split sequentially across pages, and the species identities (i.e., scientific names) required accessing the pages linked to from the sequential pages. In these cases, we ran the initial sequential sampling followed by a level 1 crawl.Level 2 crawlWhere level 1 crawls were insufficient to cover all species sold on a site, we used a level 2 crawl to reach all pages listing species. This tended to be the case on websites with multiple categories to classify and split their stock (e.g., “arachnid”—“spider”—“tarantula”).For all crawls, we used a cooldown of 20 s between requests to limit server load, and where possible we limited the scope of the crawl (i.e., linked pages to be retrieved) using a key phrase common to all stock listing pages (e.g., “/category=arachnid/”).In addition to the sampling of contemporary sites, we explored the archived pages available for https://www.terraristik.com via the Internet Archive (2002–201967). Terraristika had been previously shown as a major contributor to traded species lists4, and the website’s age and accessibility via the internet archive meant it was one of the few websites where temporal sampling was feasible. We used pages retrieved via the Internet Archive’s Wayback machine API68, via code created for3,4. The code used was based on the wayback v.0.4.0 package69, but additionally made httr v.1.4.270, jsonlite v.1.7.271, downloader v.0.464, lubridate v.1.7.1056, and tibble v.3.1.3 packages72 (Code S3).Keyword generationWe relied on multiple sources to build a list of arachnid species (spiders, scorpions and uropygi). For spiders we used the WSC (ref. 18; https://wsc.nmbe.ch/dataresources; accessed 2021-09-18). We filtered the WSC dataset to remove subspecies, then used a combination of rvest v.1.0.173, dplyr v.1.0.753, and stringr v.1.4.0 packages60 (see Code S4) to query the online version of the WSC database to retrieve all synonyms for each species. Where the synonyms were listed with an abbreviated genus, we replace the abbreviation with the first instance of a genus that matched the first letter of the abbreviation.We combined the WSC data with a list manually retrieved from the Scorpion Files74 (https://www.ntnu.no/ub/scorpion-files/index.php; accessed 2021-09-19). For the uropygi species, we combined species listings from Integrated Taxonomic Information System (ITIS75; https://www.itis.gov/servlet/SingleRpt/RefRpt?search_type=source&search_id=source_id&search_id_value=1209 and https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&anchorLocation=SubordinateTaxa&credibilitySort=TWG%20standards%20met&rankName=ALL&search_value=82710&print_version=SCR&source=from_print#SubordinateTaxa; accessed 2021-09-19) and the Western Australian Museum76 (http://www.museum.wa.gov.au/catalogues-beta/browse/uropygi; accessed 2021-09-19). We were unable to source reliable data on all scorpion and uropygi synonyms; therefore, we used all names listed from all sources, but made note of those names considered nomen dubium. Our final keyword list contained 52,111 species, 94,184 different species names, with mean of 1.81 SE ± 0.01 terms per species (range 1–61). For summaries of total species, we relied on the species classed as accepted by the species databases (WSC, Scorpion Files, ITIS and the Western Australian Museum).Keyword searchWe successfully retrieved 3020 pages from 103 websites (mean = 28.78 SE ± 11.42, range: 1–1077), and used a further 4668 previously archived pages. To prepare each of the retrieved web pages for keyword searching, we removed all double spaces, html elements, and non-alpha-numeric characters, replacing them with single spaces (Code S5). For this process we used rvest v.1.0.173, XML v.3.99.0.877, and xml2 v.1.3.278 packages. This process increased the chances that genus and species epithets would appear in a compatible format when compared to our keyword list. The process was not able to repair abbreviated genera, or aid detection where genus and species epithet were not reported side-by-side.Due to the large number of species we were forced to adapt previous searching methods, instead implementing a hierarchical genus-species search (Code S6). We searched each retrieved page for any mention of genera, then only searched for species that were contained within that genus. We did not differentiate whether the genus was currently accepted or old, so if a species had ever belonged to a genus it was included in the second stage of the search. The specifics of the keyword search used case-insensitive fixed string matching (via the stringr v.1.4.0 package60). While collation string matching would have helped detect species with differently coded ligatures or diacritic marks, the occurrence of ligature and diacritic marks are infrequent in scientific names and did not warrant the considerably increased computational costs.Via the keyword search we recorded all instances of genus matches, species matches, the website ID, and the page number. We also collected the words surrounding a genus match (3 prior and four after) as a means of exploring common terms that may be used to describe the genera.We provide the compiled outputs from searching contemporary and historic pages in Data S2–S4. Prior to combining these two datasets into a final list of traded species, and summarising the overall patterns, we cleaned out instances of spurious genera and species detections. Predominantly this included short genera names that could appear at the start of longer words (e.g., terms such as: “rufus”, “Dia”, “Diana”, “Mala”, “Inca”, “Pero”, “May”, “Janus”, “Yukon”, “Lucia”, “Zora”, “Beata”, “Neon”, “Prima”, “Meta”, “Patri”, “Enna”, “Maso”, “Mica”, “Perro”; we already implemented a filter that required genera to be preceded by a space and thus these were not part of the species name). We are confident these genera should be excluded, as none had species detected within them.Trade database and third-party dataWe downloaded United States Fish and Wildlife Service’s LEMIS data compiled by79,80 from https://doi.org/10.5281/zenodo.3565869 (Data S5). We filtered the LEMIS data to records where the class was listed as Arachnida (Code S6).We downloaded the Gross imports data from the CITES trade database from the website and filtered to Class Arachnid, years 1975–202181 (accessed 2021-09-15; Data S6), and downloaded the CITES appendices filtered to arachnids82 (Data S7).We downloaded the IUCN Redlist assessments for arachnids from https://www.iucnredlist.org83 (accessed 2021-09-15; Data S8).Species summary and visualisationWe compiled all sources of trade data (online, LEMIS, CITES) into a single dataset detailing which genera/species had been detected in each source (Data S9 and Code S7). We used two criteria to determine detection, whether there was an exact match with an accepted genus/species or whether there was a match to any historically used genera/species name. Because of splits in genera, the “ANY genera” matching is likely overly generous. For broad summaries we rely on the “ANY species” name matching.We used cowplot v.1.1.184, ggplot2 v.3.3.585, ggpubr v.0.4.086, ggtext v.0.1.187, scales v.1.1.188, scico v.1.2.089, and UpSetR v.1.4.090 to generate summary visuals (Code S8; Code S9). We added additional details to the upset plot and modified the position of plot labels using Affinity Designer v.1.10.391. We also used Affinity Designer to create the Uropygid silhouette for Fig. 1. We obtained public domain licensed spider and scorpion silhouettes from http://phylopic.org/ (https://phylopic.org/image/d7a80fdc0-311f-4bc5-b4fc-1a45f4206d27/; http://phylopic.org/image/4133ae32-753e-49eb-bd31-50c67634aca1/).Descriptions and coloursWe explored the lag time between species descriptions, and their detection in LEMIS or online trade (Code S10). We relied on the description dates provided alongside the lists of species names. Unlike the broader summaries, we restricted explorations of lag times to species detected only via exact matches (operating under the assumption that newly described species traded swiftly after description would be using the modern accepted name). We distinguished between those species detected only in the complementary data, as the earliest trade date was not known; therefore, our summaries of lag time are based on those species detected in a particular year either via LEMIS or temporal online trade.Following a visual inspection of sites where we often noticed listings with either colour or localities (e.g., “Chilobrachys spp. “Electric Blue” 0.1.3. Chilobrachys sp. “Kaeng Krachan” 0.1.0. Chilobrachys spp. “Prachuap Khiri Khan”: Data S9). We explored the words that surrounded detected genera. After using the forcats v.0.5.192, stringr v.1.4.060, and tidytext v.0.3.193 package to compile common terms and remove English stop words, we determine colour was frequently mentioned (Code S11). To filter out non-colour words, we used wikipedia’s list of colours (https://en.wikipedia.org/wiki/List_of_colors:_N%E2%80%93Z). Once cleaned, we further removed terms that are ambiguously colour related (e.g., “space”, “racing”, “photo”, “boy”, “bean”, “blaze”, “jungle”, “mountain”, “dune”, “web”, “colour”, “rainforest”, “tree”, “sea”). We then summarised this data as the counts of instances where a genus appeared alongside a given colour term (n.b., counts are therefore impacted by any underlying imbalances in how many times a site mentioned a genus). We plotted all colours using the same hex codes listed on the wikipedia page, with the exception of “cobalt”, “grey”, “metallic”, “slate”, “electric”, “dark”, “sheen”, and “chocolate” that required manual linking to a hex code.Summary of trade numbersWe summarised LEMIS data using a number of filters (Code S12). Following3,4,94, we limited our summaries to items that feasibly can be considered to represent whole individuals (LEMIS code = Dead animal BOD, live eggs (EGL), dead specimen (DEA), live specimen (LIV), specimen (SPE), whole skin (SKI), entire animal trophy (TRO)). We describe the portion of trade that is prevented (i.e., seized, where disposition == “S”). We classed non-commercial trade as anything listed as for Biomedical research (M), Scientific (S), or Reintroduction/introduction into the wild (Y). For captive vs. wild summaries, we treated all Animals bred in captivity (C and F), Commercially bred (D), and Specimens originating from a ranching operation (R) as originating from captivity. We only included animals listed as Specimens taken from the wild (W) in wild counts. The few instances that fell outside of our defined captive vs. wild categorisation are treated as other. For summaries of wild capture per genus, we relied entirely on LEMIS’s listings of genera, making no effort to determine synonymisations. We did filter out those listed only as “Non-CITES entry” or NA. We used the countrycode v.1.3.095 package to help plot the LEMIS countries of origin. Taxonomy represents an ongoing challenge, we were limited to recognising the species listed in the aforementioned databases, generating synonym lists from these sources, and attempting to reconcile these lists. Rapid rates of species description means that compiling comprehensive lists can be challenging, and species may be traded under junior synonyms or old names, and newer descriptions may not have been added to sites96. We were also limited to platforms that advertised using text not images, as images can be challenging to identify accurately.MappingMapping species is challenging due to the lack of standardised data on species distributions. Spider distributions were mapped based on the data in the World Spider Catalogue (Data S12). Firstly, the localities associated with each species were collated into four spreadsheets based on the data provided in the WSC (WSC18; https://wsc.nmbe.ch/dataresources; accessed 2021-09-18), these listed (1) country, (2) region, (3) “to” (where the range was given as one country to another) and (4) Island.Before processing any “introduced” localities were removed, the four sheets were then checked for any simple spelling errors (in islands file) or mislistings (i.e., regions in the islands file). Country data were cross-referenced with the names of country provided by Thematic Mapper to standardise them (https://thematicmapping.org/; Data S11). This was done by uploading data into Arcmap and using joins and connects to connect it to the standard country name file, and any which could not be paired were corrected to ensure all could be successfully digitised.Regions were digitised based on accepted names of different regions and included 33 different regions (see supplements) for each of these the standard accepted area within each of these regions was searched online to determine the accepted boundaries. These were then selected from the Thematic mapper, exported and labelled with the corresponding region. Once this was completed for all 33 regions they were merged and exported to a geodatabase. The spreadsheet listing regional preferences of each species was also uploaded to Arcmap 10.3, then exported into the geodatabase, then connected to a regional map using joins and relates to connect the regional preferences from the spreadsheet to the shapefiles. The new dbf was then exported to provide a listing of each species and each country in the region it was connected to, and then copied into the same csv as the corrected country listings.For preferences listed as “to” we first separated each country listed in the “to” listings into a separate column, then developed a list of species and each of the countries listed in the “to” list (which was frequently between 5–6). These were then corrected to the standard names from thematic mapper for both countries and the regions used in the previous section. We then merged the countries and regions file and added fields of geometry in ArcMap to provide a centroid for each designated area. This table was then exported and joined and connected to the species in the “to” file. This data was then converted to point form and turned to a point file, then a minimum convex polygon (convex hulls) developed for each species to connect the regions between all those listed. These species specific minimum convex polygons were then intersected with the countries from Thematic mapper, and then dissolve was used to form a shapefile that just listed species and all the countries between those ranges. This was then exported and merged with the listings from countries and regions.The islands file included both independent islands (which needed names corrected, or archipelago names given) and those that fall within a national designation. For those islands we replaced the island name with that of the country, as listings of species may be particularly poor, and tiny non-independent islands are not visible in the global-scale analysis.This forth database table was then merged with the former three, and remove duplicates used to remove any duplicate entries, as species often had individual countries listed in additions to regions or “to”. This was then uploaded into Arcmap and exported to a geodatabase file then connected to the original Thematic mapper file and exported to the geodatabase to yield 134,187 connections between species and countries. This was then connected to our main analysis to include the trade status, and CITES and IUCN Redlist status for each species for further analysis.Scorpion data was considerably messier than that on the world spider catalogue. Firstly, we downloaded all scorpion data from iNaturalist and GBIF97,98 (search; scorpions), removed duplicates, then cross-referenced these with the thematic mapper file within Quantum GIS. Species listed in regions where they were clearly not native (i.e., a species listed in the UK when the rest of that species or genus were in Australia) were removed, and all extinct species were excluded.In addition, all the “update files” were downloaded from the “Scorpion files”, the PDFs collated then using smallpdf tools the tables were extracted into excel form and cleaned to include just species and country listing. This was added to the countries listed for species within99 and100 though this was restricted to a subset of species. The data were all collated into an excel file with the species name, and country listing. This was then added to all the data from https://scorpiones.pl/maps/. These maps have a good coverage of species countries, but are apparently no longer being updated (Jan Ove Rein pers comm 2021) hence the need for further data to provide complete and updated and comprehensive coverage for all species. Country names were then standardised based on the Thematic Mapper standards (Data S13 and Data S11). Species names were then cross-referenced to those listed in the Scorpion files, any not matching were checked as synonyms and converted to the accepted name (though the only collated data for Scorpion synonyms was on French-language Wikipedia, i.e., see https://fr.wikipedia.org/wiki/Bothriurus). Once all country and species names were corrected this provided a listing of 4059 species-country associations. These were then associated with country files in the same way as spiders. We plotted spider and scorpion species/genera, as well as LEMIS origins, using ggplot285, combining Thematic world border data (https://thematicmapping.org/) with summaries of species/genera/and trade levels. Species listed in a single-country (and thus more likely to be country endemic) were also counted using summary statistics, so that species most vulnerable to trade could be noted separately.Reporting summaryFurther information on research design is available in the Nature Research Reporting Summary linked to this article. More

  • in

    Optimal strategies and cost-benefit analysis of the $${varvec{n}}$$ n -player weightlifting game

    PreliminariesTo unify all the five classes of two-by-two games, Yamamoto et al.35 introduced the weightlifting game. In this game, each player either cooperates or defects in carrying a weight. Players who carry the weight pay a cost, (cge 0). The weight is successfully lifted with probability ({p}_{i}), where (i=mathrm{0,1},2) is the total number of cooperators and ({p}_{i}) increases with the number of cooperators (i). If the cooperators succeed, both players receive a benefit (b >0). However, in case of failure, both players gain nothing. The pay-off of the cooperators is (b{p}_{i}-c), and the pay-off of the defectors is (b{p}_{i}) (Table 2). In terms of the parameters (Delta {p}_{1}={p}_{1}-{p}_{0}) and (Delta {p}_{2}={p}_{2}-{p}_{1}), which represents the increase in the probability of success due to an additional cooperator, the following inequalities are obtained for the pay-offs (R, T, S), and (P) (Table 1):

    (i)

    (Delta {p}_{1} >c/b) for (S >P),

    (ii)

    (Delta {p}_{2} >c/b) for (R >T), and

    (iii)

    (Delta {p}_{1}+Delta {p}_{2} >c/b) for (R >P).

    Table 2 Pay-off table of two-person weightlifting game.Full size tablePD satisfies only (iii), CH satisfies (i) and (iii), SH satisfies (ii) and (iii), DT satisfies none of the three conditions, and CT satisfies all three. In 2021, Chiba et al.1 studied the evolution of cooperation in society by incorporating environmental value in the weightlifting game. They found that the evolution of cooperation seems to follow a DT to DT trajectory, which can explain the rise and fall of human societies.The ({varvec{n}})-player weightlifting gameIn this study, we generalize the weightlifting game to (n)-players. Suppose (n) self-interested and rational individuals selected from a population of infinite size. The (n) players are asked to lift a weight. Each individual (or player) can decide to either carry the weight (cooperate, (C)) or not carry/pretend to carry the weight (defect, (D)). Players who decide to carry the weight can either succeed or fail. The probability of successful weightlifting is denoted by ({p}_{i}), (i=mathrm{0,1},dots ,n), where (i) indicates the number of cooperators (henceforth, (i) always represents the number of cooperators). The probability of success increases with the number of individuals cooperating, and it may remain less than unity even if all (n) individuals cooperate. Players who decide to carry the weight pay a cost, (cge 0), regardless of the outcome, while those who defect need not pay anything. If the cooperators succeed, all (n) individuals receive a benefit (bge 0). There is no penalty for failure. We use the expected gains/losses of the players as the pay-off. If there are (i-1) cooperative players, then the pay-off of (j) is ({B}_{C}left(iright)=b{p}_{i}-c) when (j) cooperates and ({B}_{D}left(i-1right)=b{p}_{i-1}) when (j) defects. The number of cooperators differs by one, since in ({B}_{C}left(iright)), there is an additional cooperator, which is (j) him- or herself. To decide whether to cooperate or defect, all players weigh their expected gain and rationally choose the option with the highest expected gain. The graphical outline of this game is illustrated in Fig. 1 (see also Supplementary Figure S1 for the flow of the game). The pay-off table for a four-player game is shown as an example in Table 3. Here, player (1) is the innermost row (strategies are listed in the second column of the table), player (2) is the innermost column (strategies are listed in the second row of the table), and the succeeding players take the succeeding rows or columns (we enter the first player as a row player and the following player as a column player and continue in this order). Each cell represents players’ pay-offs, with the first component being the pay-off for the first player, the second for the second player, and so on. For instance, consider the entry in the first row and third column, where players (1, 2) and (3) cooperate but player (4) defects. The pay-offs of players (1) to (3) are ({B}_{C}(3)), while the pay-off of player (4) is ({B}_{D}left(3right)). In the above example, there are as many row players as column players because the number of players is even. However, we can have one more player in the rows than in the columns if there is an odd number of players.Figure 1A schematic diagram of the n-player weightlifting game. In this game, players decide whether to cooperate or defect in carrying the weight. Cooperators need to pay a cost. The weightlifting can either succeed or fail. In case of success, all players receive a benefit. In case of failure, all players receive nothing. The player’s pay-off depends on the benefit, cost and probability of success. Each player decides whether to cooperate or defect so as to maximize the expected gain.Full size imageTable 3 Pay-off table of four-player weightlifting game.Full size tableNash equilibrium and pareto optimal strategiesHere we present the Nash equilibrium and Pareto optimal strategies of the (n)-player weightlifting game in terms of the cost-to-benefit ratio (c/b) and probability of success ({p}_{i}). The Nash equilibrium consists of the best responses of each player. Players have no incentive to deviate from this strategy profile since deviation will not increase an individual’s pay-off if the other players maintain the same strategy. If ({B}_{C}(i)ge {B}_{D}(i-1)), the best response of player (j) is to cooperate, but if ({B}_{C}(i)le {B}_{D}(i-1)), the best response is to defect.We have (Delta {p}_{i}={p}_{i}-{p}_{i-1}ge 0) for the increase in the probability of success because the probability ({p}_{i}) increases with the number of cooperators (i). It is convenient to divide cases depending on whether (Delta {p}_{i} >c/b) or (Delta {p}_{i} More

  • in

    Online pet shops are crawling with spiders captured in the wild

    Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain
    the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in
    Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles
    and JavaScript. More

  • in

    Distance to public transit predicts spatial distribution of dengue virus incidence in Medellín, Colombia

    DataAll data was processed and analyzed using R (R Core Team, Version 4.0.3).Dengue case data were collected and shared by the Alcaldía de Medellín, Secretaría de Salud. In Medellin, dengue case surveillance is conducted by public health institutions that classify and report all cases that meet the WHO clinical dengue case criteria for a probable case to Medellin’s Secretaría de Salud through SIVIGILA (“el Sistema Nacional de Vigilancia en Salud Publica). All case data were de-identified and aggregated to the SIT Zone level.Human public transit usage and movement data were collected and shared by the Área Metropolitana del Valle de Aburrá for 50–200 respondents per SIT Zone. The “Encuestas Origen Destino” (Origen Destination Surveys) were conducted in 2005, 2011, and 2016 and published in 2006, 2012, and 2017, with survey methods described by the Área Metropolitana del Valle de Aburrá25. Survey respondents include a randomly selected subset of all Medellin residents in each SIT zone regardless of whether they use public transit or not. Survey respondents reported the start and end locations, purpose for travel, and mode of travel for all movement over the last 24 h from the time the survey was administered. Respondents reported all modes of movement, including public transit, private transit, and movement on foot. The results of the survey published in 2017 are published online by the Área Metropolitana del Valle de Aburrá26, and select data are available through the geodata-Medellin open data portal27. The results and data of the survey published in 2012 are not publicly available and were obtained directly from the Área Metropolitana del Valle de Aburrá.The public transit usage survey data were also used to extract socioeconomic data to the SIT zone; surveyors also reported basic demographic data including household Estrato, which was averaged per SIT zone to estimate zone socioeconomic status. “Estrato” measures socioeconomic status on a scale from 1 (lowest) to 6 (highest). This system is used by the government of Colombia to allocate public services and subsidies (Law 142, 1994). Data from the public transit usage survey were used to extract socioeconomic status data because it is the only location available where the spatial scale of the data matched the spatial scale of the SIT zone.Data on the location of Medellín public transit lines was downloaded as shape files from the geodata-Medellín open data portal27 and subset for each year to the set of transit lines that was available in that year. Data on the opening date of each Medellín public transit line was taken from the Medellín metro website28.Because census data at the zone level were not available for this study and only exists for 2005 and 2018, we used population estimates for each year downloaded from the WorldPop project29 and aggregated by SIT zone. The accuracy of WorldPop estimates were checked against available census data for 2005 and 2018 at the comuna level, accessed via the geodata- Medellín open data portal27.Ethical considerationsNo human subjects research was conducted. All data used was de-identified, and the analysis was conducted on a database of cases meeting the clinical criteria for dengue with no intervention or modification of biological, physical, psychological, or social variables. All methods were performed in accordance with the relevant guidelines and regulations.Data analysisQuantifying public transit usage and distance from nearest transit lineTo quantify public transit usage, we determined if each respondent reported using the metro, metroplus, or ruta alimentadora (supplementary bus route system integrated with the metro system) in the last 24 h. We then calculated the percent of respondents using the public transit system at least once for each SIT zone.To quantify the distance to the nearest public transit line, we calculated the distance from the center point of each zone to the closest metro, metroplus, tranvía, metrocable, ruta alimentadora, or escalera eléctrica. This was recalculated for each year, including new transit lines that were added within that year.Spatial autoregressive models of dengue incidenceDengue incidence per year at the level of the SIT zone was modeled using a fixed effects spatial panel model by maximum likelihood (R package splm30) as described in31. Our fixed effects were socioeconomic status, distance from public transit, a two-way interaction between these factors, and year. To weight dengue cases by population per SIT zone, the model contained a log offset of population per zone per year. Dengue case counts were log transformed after adding one to account for zones with zero dengue cases in a given year. Year was analyzed as a categorical variable to avoid smoothing epidemic years. All continuous variables were scaled to enable comparison of effect size. Because these panel models require balanced data across time, data was truncated to SIT zones that had data for all years available (247 remaining of 291). Spatial dependency was evaluated, and the model was selected using the Hausman specification test and locally robust panel Lagrange Multiplier tests for spatial dependence. Based on a significant Hausman specification test result, which indicates a poor specification of the random effect model, a fixed effect model was chosen. This result is supported by the fact that we had a nearly exhaustive sample of SIT zones in the Medellin metro area. Lagrange multiplier tests were used to determine the most appropriate spatial dependency specifications. Based on the results of the Lagrange multiplier tests, a Spatial Autoregressive (SAR) model was the most appropriate to incorporate spatial dependency; a SAR model considers that the number of dengue cases in a SIT zone depends on the number in neighboring zones.Because public transit usage was a measurement taken during just two of the study years, we constructed an additional fixed effects spatial panel model by maximum likelihood model of dengue incidence in just 2011 and 2016 that included ridership as an additional predictor variable. Our fixed effects were year, socioeconomic status, distance from public transit, a two-way interaction between socioeconomic status and distance from public transit, percent utilizing public transit, and a two-way interaction between socioeconomic status and percent utilizing public transit. As in our model of all years, the model contained a log offset of population per zone per year and dengue case counts were log transformed after adding one to account for zones with zero dengue cases in a given year, year was analyzed as a categorical variable, and all continuous variables were scaled to enable comparison of effect size. The data was truncated to SIT zones that had data for all years available (251 remaining of 291). We used the same model selection process, and again a fixed effect model was chosen, and based on the results of the Lagrange multiplier tests, a Spatial Autoregressive (SAR) model was determined the most appropriate to incorporate spatial dependency. More