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    Population density, bottom-up and top-down control as an interactive triplet to trigger dispersal

    Nathan, R. The challenges of studying dispersal. Trends. Ecol. Evol. 16, 481–483. https://doi.org/10.1016/S0169-5347(01)02272-8 (2001).CAS 
    Article 

    Google Scholar 
    Bonte, D. et al. Costs of dispersal. Biol. Rev. Camb. Philos. Soc. 87, 290–312. https://doi.org/10.1111/j.1469-185X.2011.00201.x (2012).Article 
    PubMed 

    Google Scholar 
    Matthysen, E. Multicausality of dispersal: A review. In Dispersal Ecology and Evolution (eds Clobert, J. et al.) 3–18 (Oxford University Press, 2012).Chapter 

    Google Scholar 
    Clobert, J., Le Galliard, J.-F., Cote, J., Meylan, S. & Massot, M. Informed dispersal, heterogeneity in animal dispersal syndromes and the dynamics of spatially structured populations. Ecol. Lett. 12, 197–209. https://doi.org/10.1111/j.1461-0248.2008.01267.x (2009).Article 
    PubMed 

    Google Scholar 
    Poethke, H. J. & Hovestadt, T. Evolution of density- and patch-size-dependent dispersal rates. Proc. R. Soc. Lond. 269, 637–645. https://doi.org/10.1098/rspb.2001.1936 (2002).Article 

    Google Scholar 
    Benton, T. G. & Bowler, D. E. Dispersal in invertebrates: Influences on individual decisions. Ecol. Evol. 1, 41–49 (2012).
    Google Scholar 
    Legrand, D. et al. Ranking the ecological causes of dispersal in a butterfly. Ecography 38, 822–831. https://doi.org/10.1111/ecog.01283 (2015).Article 

    Google Scholar 
    Travis, J. M. J., Murrell, D. J. & Dytham, C. The evolution of density–dependent dispersal. Proc. R. Soc. Lond. B 266, 1837–1842. https://doi.org/10.1098/rspb.1999.0854 (1999).Article 

    Google Scholar 
    Matthysen, E. Density-dependent dispersal in birds and mammals. Ecography 28, 403–416. https://doi.org/10.1111/j.0906-7590.2005.04073.x (2005).Article 

    Google Scholar 
    de Meester, N., Derycke, S., Rigaux, A. & Moens, T. Active dispersal is differentially affected by inter- and intraspecific competition in closely related nematode species. Oikos 124, 561–570. https://doi.org/10.1111/oik.01779 (2015).Article 

    Google Scholar 
    Bowler, D. E. & Benton, T. G. Causes and consequences of animal dispersal strategies: Relating individual behaviour to spatial dynamics. Biol. Rev. 80, 205–225. https://doi.org/10.1017/S1464793104006645 (2005).Article 
    PubMed 

    Google Scholar 
    Bengtsson, G., Hedlund, K. & Rundgren, S. Food- and density-dependent dispersal: Evidence from a soil collembolan. J. Anim. Ecol. 63, 513. https://doi.org/10.2307/5218 (1994).Article 

    Google Scholar 
    Fellous, S., Duncan, A., Coulon, A. & Kaltz, O. Quorum sensing and density-dependent dispersal in an aquatic model system. PLoS ONE 7, e48436. https://doi.org/10.1371/journal.pone.0048436 (2012).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Aguillon, S. M. & Duckworth, R. A. Kin aggression and resource availability influence phenotype-dependent dispersal in a passerine bird. Behav. Ecol. Sociobiol. 69, 625–633. https://doi.org/10.1007/s00265-015-1873-5 (2015).Article 

    Google Scholar 
    Byers, J. E. Effects of body size and resource availability on dispersal in a native and a non-native estuarine snail. J. Exp. Mar. Biol. Ecol. 248, 133–150. https://doi.org/10.1016/S0022-0981(00)00163-5 (2000).CAS 
    Article 
    PubMed 

    Google Scholar 
    de Meester, N., Derycke, S. & Moens, T. Differences in time until dispersal between cryptic species of a marine nematode species complex. PLoS ONE 7, e42674. https://doi.org/10.1371/journal.pone.0042674 (2012).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Sepulveda, A. J. & Marczak, L. B. Active dispersal of an aquatic invader determined by resource and flow conditions. Biol. Invasions 14, 1201–1209. https://doi.org/10.1007/s10530-011-0149-x (2012).Article 

    Google Scholar 
    Lobbia, P. A. & Mougabure-Cueto, G. Active dispersal in Triatoma infestans (Klug, 1834) (Hemiptera Reduviidae: Triatominae): Effects of nutritional status, the presence of a food source and the toxicological phenotype. Acta Trop. 204, 105345. https://doi.org/10.1016/j.actatropica.2020.105345 (2020).CAS 
    Article 
    PubMed 

    Google Scholar 
    Barbraud, C., Johnson, A. R. & Bertault, G. Phenotypic correlates of post-fledging dispersal in a population of greater flamingos: The importance of body condition. J. Anim. Ecol. 72, 246–257. https://doi.org/10.1046/j.1365-2656.2003.00695.x (2003).Article 

    Google Scholar 
    Bonte, D. & de La Peña, E. Evolution of body condition-dependent dispersal in metapopulations. J. Evol. Biol. 22, 1242–1251. https://doi.org/10.1111/j.1420-9101.2009.01737.x (2009).CAS 
    Article 
    PubMed 

    Google Scholar 
    Moran, N. P., Sánchez-Tójar, A., Schielzeth, H. & Reinhold, K. Poor nutritional condition promotes high-risk behaviours: A systematic review and meta-analysis. Biol. Rev. Camb. Philos. Soc. 96, 269–288. https://doi.org/10.1111/brv.12655 (2021).Article 
    PubMed 

    Google Scholar 
    Altermatt, F. & Fronhofer, E. A. Dispersal in dendritic networks: Ecological consequences on the spatial distribution of population densities. Freshw. Biol. 63, 22–32. https://doi.org/10.1111/fwb.12951 (2018).Article 

    Google Scholar 
    McCauley, S. J. & Rowe, L. Notonecta exhibit threat-sensitive, predator-induced dispersal. Biol. Lett. 6, 449–452. https://doi.org/10.1098/rsbl.2009.1082 (2010).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Baines, C. B., McCauley, S. J. & Rowe, L. Dispersal depends on body condition and predation risk in the semi-aquatic insect, Notonecta undulata. Ecol. Evol. 5, 2307–2316. https://doi.org/10.1002/ece3.1508 (2015).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Hammill, E., Fitzjohn, R. G. & Srivastava, D. S. Conspecific density modulates the effect of predation on dispersal rates. Oecologia 178, 1149–1158. https://doi.org/10.1007/s00442-015-3303-9 (2015).ADS 
    Article 
    PubMed 

    Google Scholar 
    Fronhofer, E. A. et al. Bottom-up and top-down control of dispersal across major organismal groups. Nat. Ecol. Evol. 2, 1859–1863. https://doi.org/10.1038/s41559-018-0686-0 (2018).Article 
    PubMed 

    Google Scholar 
    Delm, M. Vigilance for predators: Detection and dilution effects. Behav. Ecol. Sociobiol. https://doi.org/10.1007/BF00171099 (1990).Article 

    Google Scholar 
    Matthysen, E. Multicausality of dispersal: A review. Ecol. Evol. 1, 3–18 (2012).
    Google Scholar 
    Bowler, D. E. & Benton, T. G. Variation in dispersal mortality and dispersal propensity among individuals: The effects of age, sex and resource availability. J. Anim. Ecol. 78, 1234–1241. https://doi.org/10.1111/j.1365-2656.2009.01580.x (2009).Article 
    PubMed 

    Google Scholar 
    Giere, O. Meiobenthology. The microscopic motile fauna of aquatic sediments 2nd edn. (Springer, 2009).
    Google Scholar 
    Ptatscheck, C. & Traunspurger, W. The ability to get everywhere: Dispersal modes of free-living, aquatic nematodes. Hydrobiologia 22, 71. https://doi.org/10.1007/s10750-020-04373-0 (2020).Article 

    Google Scholar 
    Ptatscheck, C. & Gansfort, B. Dispersal of free-living nematodes. In Ecology of Freshwater Nematodes (ed. Traunspurger, W.) 151–184 (CABI, 2021).Chapter 

    Google Scholar 
    Traunspurger, W., Bergtold, M., Ettemeyer, A. & Goedkoop, W. Effects of copepods and chironomids on the abundance and vertical distribution of nematodes in a freshwater sediment. J. Freshw. Ecol. 21, 81–90. https://doi.org/10.1080/02705060.2006.9664100 (2006).Article 

    Google Scholar 
    Bargmann, C. I. Chemosensation in C. elegans. WormBook 1, 1–29. https://doi.org/10.1895/wormbook.1.123.1 (2006).Article 

    Google Scholar 
    Chasnov, J. R. & Chow, K. L. Why are there males in the hermaphroditic species Caenorhabditis elegans?. Genetics 160, 983–994 (2002).CAS 
    Article 

    Google Scholar 
    Ramot, D., Johnson, B. E., Berry, T. L., Carnell, L. & Goodman, M. B. The Parallel Worm Tracker: A platform for measuring average speed and drug-induced paralysis in nematodes. PLoS ONE 3, e2208. https://doi.org/10.1371/journal.pone.0002208 (2008).ADS 
    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Muschiol, D. & Traunspurger, W. Life cycle and calculation of the intrinsic rate of natural increase of two bacterivorous nematodes, Panagrolaimus sp. and Poikilolaimus sp. from chemoautotrophic Movile Cave, Romania. Nematology 9, 271–284. https://doi.org/10.1163/156854107780739117 (2007).Article 

    Google Scholar 
    Beier, S., Bolley, M. & Traunspurger, W. Predator-prey interactions between Dugesia gonocephala and free-living nematodes. Freshw. Biol. 49, 77–86. https://doi.org/10.1046/j.1365-2426.2003.01168.x (2004).Article 

    Google Scholar 
    Powers, E. M. & Sayre, R. M. A predacious soil turbellarian that feeds on free-living and plant-parasitic nematodes. Nematology 12, 619–629. https://doi.org/10.1163/187529266X00482 (1966).Article 

    Google Scholar 
    Kreuzinger-Janik, B., Kruscha, S., Majdi, N. & Traunspurger, W. Flatworms like it round: Nematode consumption by Planaria torva (Müller 1774) and Polycelis tenuis (Ijima 1884). Hydrobiologia 819, 231–242. https://doi.org/10.1007/s10750-018-3642-8 (2018).Article 

    Google Scholar 
    Burnham, K. P. & Anderson, D. R. Practical use of the information-theoretic approach. In Model Selection and Inference (eds Burnham, K. P. & Anderson, D. R.) 75–117 (Springer, 1998).Chapter 

    Google Scholar 
    McCulloch, C. E., Searle, S. R. & Neuhaus, J. M. Generalized, Linear, and Mixed Models (Wiley, 2008).MATH 

    Google Scholar 
    R Core Team. R: A language and environment for statistical computing. (R Foundation for Statistical Computing, 2021). https://www.R-project.org/.Mazerolle, M. J. AICcmodavg: Model Selection and Multimodel Inference Based on (Q)AIC(c) (2020).Bonte, D., de Roissart, A., Wybouw, N. & van Leeuwen, T. Fitness maximization by dispersal: Evidence from an invasion experiment. Ecology 95, 3104–3111. https://doi.org/10.1890/13-2269.1 (2014).Article 

    Google Scholar 
    You, Y., Kim, J., Raizen, D. M. & Avery, L. Insulin, cGMP, and TGF-beta signals regulate food intake and quiescence in C. elegans: a model for satiety. Cell Metab. 7, 249–257. https://doi.org/10.1016/j.cmet.2008.01.005 (2008).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Shtonda, B. B. & Avery, L. Dietary choice behavior in Caenorhabditis elegans. J. Exp. Biol. 209, 89–102. https://doi.org/10.1242/jeb.01955 (2006).Article 
    PubMed 

    Google Scholar 
    Mathieu, J. et al. Habitat quality, conspecific density, and habitat pre-use affect the dispersal behaviour of two earthworm species, Aporrectodea icterica and Dendrobaena veneta, in a mesocosm experiment. Soil Biol. Biochem. 42, 203–209. https://doi.org/10.1016/j.soilbio.2009.10.018 (2010).CAS 
    Article 

    Google Scholar 
    Oro, D., Cam, E., Pradel, R. & Martínez-Abraín, A. Influence of food availability on demography and local population dynamics in a long-lived seabird. Proc. R. Soc. Lond. B 271, 387–396. https://doi.org/10.1098/rspb.2003.2609 (2004).Article 

    Google Scholar 
    Harvey, S. C. Non-dauer larval dispersal in Caenorhabditis elegans. J. Exp. Zool. B Mol. Dev. Evol. 312B, 224–230. https://doi.org/10.1002/jez.b.21287 (2009).Article 
    PubMed 

    Google Scholar 
    Wilden, B., Majdi, N., Kuhlicke, U., Neu, T. R. & Traunspurger, W. Flatworm mucus as the base of a food web. BMC Ecol. 19, 15. https://doi.org/10.1186/s12898-019-0231-2 (2019).Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Gloria-Soria, A. & Azevedo, R. B. R. npr-1 Regulates foraging and dispersal strategies in Caenorhabditis elegans. Curr. Biol. 18, 1694–1699. https://doi.org/10.1016/j.cub.2008.09.043 (2008).CAS 
    Article 
    PubMed 

    Google Scholar 
    Harrison, R. G. Dispersal Polymorphisms in Insects. Annu. Rev. Ecol. Syst. 11, 95–118. https://doi.org/10.1146/annurev.es.11.110180.000523 (1980).Article 

    Google Scholar 
    Denno, R. F. & Peterson, M. A. Density-dependent dispersal and its consequences for population dynamics. Popul Dyn 1, 113–130 (2021).
    Google Scholar 
    Srinivasan, J. et al. A modular library of small molecule signals regulates social behaviors in Caenorhabditis elegans. PLoS Biol. 10, e1001237. https://doi.org/10.1371/journal.pbio.1001237 (2012).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Bretscher, A. J. et al. Temperature, oxygen, and salt-sensing neurons in C. elegans are carbon dioxide sensors that control avoidance behavior. Neuron 69, 1099–1113. https://doi.org/10.1016/j.neuron.2011.02.023 (2011).CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 
    Freckman, D. W., Duncan, D. A. & Larson, J. R. Nematode density and biomass in an annual grassland ecosystem. J. Range Manag. 32, 418. https://doi.org/10.2307/3898550 (1979).Article 

    Google Scholar 
    Cote, J. et al. Evolution of dispersal strategies and dispersal syndromes in fragmented landscapes. Ecography 40, 56–73. https://doi.org/10.1111/ecog.02538 (2017).Article 

    Google Scholar  More

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    MeadoWatch: a long-term community-science database of wildflower phenology in Mount Rainier National Park

    Study origin and designThe MeadoWatch project (MW) is a project run collaboratively between the University of Washington (UW) and the United States National Park Service to monitor the phenology of alpine and subalpine wildflower species across large elevational gradients in Mount Rainier National Park (Fig. 2). MW was established in 2013 with the goal of understanding long-term effects of climate change on Mount Rainier National Park wildflower communities using community-science approaches. The first MW transect was established along Reflection Lakes, Skyline, and Paradise Glacier trail system in 2013 (9–11 plots). In 2015, MW expanded to include a second transect (15–17 plots) along the Glacier Basin trail (Fig. 1a). The MW transects span around 5 km each, over a 400 m altitudinal gradient (Reflection Lakes: 1490m–1889m a.s.l.; Glacier Basin: 1460m–1831m a.s.l.)Fig. 2Alpine meadows, plot extension, and target species. (a) Species-rich alpine meadow in Mount Rainier National Park (Mount Tahoma), showing many of the target species in the foreground. (b) MW volunteer coordinator Anna Wilson at a plot, indicating the arm span that defines the plot area (personal likeness used with confirmed consent). (c) Species composition and proportion of reports per species in each of the transects; species common to both trails are highlighted with striped shadowing. Photographs: A. John (a), L. Felker (b).Full size imagePlots are located along the side of each trail, marked with a colored survey marker. The area of each plot is defined by the arm-span of volunteers when they position themselves over the plot marker looking away from the trail (Fig. 2b). While less accurate than marking the corners of plots, this approach was used to avoid establishing permanent structures in wilderness areas within the National Park. The surveyed area in each plot is, on average, 1.25 m2. Each plot is also equipped with temperature sensors (HOBO Pendant Logger, Onset Computer Corp.) buried approximately 4 cm below the ground. Sensors are placed at the start of each fall season and removed at the beginning of each summer season for data downloading. The HOBO sensors provide an estimate for the date of snow disappearance and in-situ temperature at 3 hours intervals. Once plots are covered in snow, soil temperatures remain at 0 °C and show no diurnal variation, so that daily changes in temperatures above 1 °C can be used to determine the earliest date without snow cover20. We use these approaches to provide dates of snow appearance and disappearance, snow cover duration, and minimum soil temperatures for each year and plot. Occasionally, temperature data during the snow disappearing window were lost due to sensor failure or loss of sensors (which occurs because plots are not permanently marked and/or well-meaning visitors remove sensors). This, and the lack of temperature sensors in the first year of the project, resulted in approx. 20% of cases of missing data. In those cases, we used a data imputation method to estimate the missing values based on data from nearby plots and a parallel temperature data collection with 890 total observations. These estimates were highly reliable in filling the data gaps (see Appendix C in16 for further details).Focal speciesWe originally targeted 16 native wildflower species along each transect, which were chosen based on their abundance, ease of identification, and presence in the plot. Four of those target species were present on both transects. In 2016 we replaced one species with a different one (see further information below), making for a total of 17 species monitored (Fig. 2c). The focal species are: American bistort* (Polygonum bistortoides), avalanche lily (Erythronium montanum), bracted lousewort* (Pedicularis bracteosa), broadleaf arnica (Arnica latifolia), cascade aster (Aster ledophyllus; synonym Eucephalus ledophyllus), glacier lily (Erythronium grandiflorum), Gray’s lovage (Ligusticum grayi), magenta paintbrush (Castilleja parviflora), mountain daisy (Erigenon peregrinus; synonym Erigeron glacialis), northern microseris (Microseris alpestris; synonym Nothocalais alpestris), scarlet paintbrush (Castilleja miniata), sharptooth angelica (Angelica arguta), sitka valerian* (Valeriana sitchensis), subalpine lupine* (Lupinus arcticus; synonym Lupinus latifolius var. subalpinus), tall bluebell (Mertensia paniculata), Canby’s licorice-root (Ligusticum canbyi), and western anemone (Anemone occidentalis). Asterisks denote species monitored along both trails.Due to challenges in species identification, we dropped Canby’s licorice-root (Ligusticum canbyi) as a target species in 2016. Consequently, Ligusticum canbyi has limited replication in the database (Fig. 2c). While we included the phenological records of this species for the sake of completeness, we recommend focusing on the other 16 species, which are both better represented (in terms of data coverage) and are free of any potential misidentification issues.For additional information on the species, methods, identification cues, and image resources see: http://www.meadowatch.org, https://www.youtube.com/channel/UCGBFTKxf8FIWswMDxBavpuQ, and the appendices therein16.Data collection and volunteer trainingDuring the summer months, MW volunteers and scientists collect reproductive phenology data with a frequency between 3 and 9 trail reports per week. Each report records the presence or absence of 4 phenophases for each target species present in each of the plots. The phenophases are ‘budding’, ‘flowering’, ‘ripening fruit’, and ‘releasing seed’. Phenophases were defined as follows:BuddingThe beginning growth of the flower which has not yet opened. A plant is considered budding if buds are present, but the stamen and pistils are not yet visible and available to pollinators.FloweringThe generally “showy” part of the plant that holds the reproductive parts (stamens and pistils). A plant is considered flowering when at least one flower is open, and the stamens and pistils are visible and available for pollination and reproduction.Ripening fruitThe fruit develops from the female part of the flower following successful pollination. In the target species, fruits can take many forms, from hard, fleshy capsules, juicy berries, to a feathery tuft on the end of a seed. A plant is in the ripening fruit stage when reproductive parts on at least one reproductive stalk are non-functional and the formation of the fruit part is clearly ongoing (visible), but seeds are not yet fully mature and not yet being dispersed.Releasing seedAfter the fruit ripens, seeds are released to be dispersed by gravity, wind, or animals. A plant is considered in the releasing seed stage if seeds are actively being released on at least one reproductive stalk (but there are still seeds present).A full description, including illustrations for each species’ phenophase and identification cues is available in http://www.meadowatch.org/volunteer-resources.html, as well as in Annex 1 – Supplementary Documentation. Multiple phenophases can be present simultaneously, depending on the species, and are noted independently. Additionally, volunteers are also asked to record the presence of snow (‘snow covered plot’, ‘partially covered plot’, or ‘snow-free plot’), and, since 2017, the presence of damage by herbivory (‘presence of browsed stems’) on each plot.In years not impacted by the SARS-Cov-2 pandemic MW volunteers attend an in-person 3-hour botanical and phenological training session taught by UW scientists at the beginning of each sampling season. Volunteers were also provided with detailed species-identification guides, including an extensive description of sampling methods and location of the plots. The trainings for the 2020 and 2021 seasons were held virtually via a series of online training videos. In these years, volunteers took a quiz on wildflower phenology, plant identification and data collection methods after viewing these videos and were required to ‘pass’ a certain threshold to volunteer (unlimited attempts were allowed). During these virtual trainings, volunteers were provided with digital copies of the species identification guides, with many returning volunteers using printed guides they had kept from previous years.At the end of their phenological hike, volunteers submit their data sheets either by depositing them in lockboxes located within the park, or by scanning and emailing them directly to mwatch@uw.edu. Data are then entered manually and stored in the UW repositories after being checked for consistency at the end of each sampling season.The parallel data collection by members of UW’s Hille Ris Lambers group (including PI, postdoctoral researchers, graduate students, and trained interns) acted as the following: (i) a quality-control, i.e., allowing us to compare the consistency in phenology assessments between volunteers and scientists, and (ii) a way to increase the temporal resolution and scale of the data, e.g., by reducing early season gaps and ‘weekend bias’17. This parallel expert sampling was carried out around once a week between 2013 and 2020, showing great consistency between the two groups. For detailed comparisons between volunteers and scientists’ assessments see the data validation section (as well as Appendix E in16).Processed dataIn addition to the raw phenological data, we also provide here parameters to construct the year, species, and plot-specific flowering phenology based on the timing of snow disappearance (as in16). Models describe unimodal probability distributions that were fitted with maximum likelihood models to binomial flowering data from each species, year, and plot. These curves have been used to estimate peak flowering dates and diversity and link them to reported visitor experiences16. Here, we provide the 3 parameters defining the unimodal curve of flowering probability per species i, plot j and year k: the duration of flowering (𝛿ijk), the maximum probability of flowering (𝜇ijk), and peak flowering (in DOY – ρijk); following the equations described in16 and https://github.com/ajijohn/MeadoWatch).The parameters of these probability distribution curves are ready-to-use values that can be broadly and easily used to estimate floral compositional change over past seasons due to changing environmental conditions—for example, to inform plant-pollinator interaction networks if combined with pollinator behavioral data (e.g.21). More

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    Reduced bacterial mortality and enhanced viral productivity during sinking in the ocean

    Volk T, Hoffert MI. Ocean carbon pumps: Analysis of relative strengths and efficiencies in ocean-driven atmospheric CO2 changes. In: Sundquist ET, Broecker WS. (eds). The carbon cycle and atmospheric CO2: Natural variations archean to present. American Geophysical Union, Geophysical Monograph, Washington, DC: 1985. p. 32:99–110.Scharek R, Tupas LM, Karl DM. Diatom fluxes to the deep sea in the oligotrophic North Pacific gyre at Station ALOHA. Mar Ecol-Prog Ser. 1999;182:55–67.
    Google Scholar 
    Simon M, Grossart H, Schweitzer B, Ploug H. Microbial ecology of organic aggregates in aquatic ecosystems. Aquat Micro Ecol. 2002;28:175–211.
    Google Scholar 
    Siegenthaler U, Sarmiento JL. Atmospheric carbon dioxide and the ocean. Nature. 1993;365:119–25.CAS 

    Google Scholar 
    Ducklow H, Steinberg DK. Upper ocean carbon export and the biological pump. Oceanography. 2001;14:50–58.
    Google Scholar 
    Jiao N, Herndl GJ, Hansell DA, Benner R, Kattner G, Wilhelm SW, et al. Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean. Nat Rev Microbiol. 2010;8:593–9.CAS 
    PubMed 

    Google Scholar 
    DeLong EF, Franks DG, Alldredge AL. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol Oceanogr. 1993;38:924–34.
    Google Scholar 
    Allen AE, Allen LZ, McCrow JP. Lineage specific gene family enrichment at the microscale in marine systems. Curr Opin Microbiol. 2013;16:605–17.CAS 
    PubMed 

    Google Scholar 
    D’Ambrosio L, Ziervogel K, MacGregor B, Teske A, Arnosti C. Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison. ISME J. 2014;8:2167–79.PubMed 
    PubMed Central 

    Google Scholar 
    Martin JH, Knauer GA, Karl DM, Broenkow WW. VERTEX: carbon cycling in the northeast Pacific. Deep-Sea Res Part I-Oceanogr Res Pap. 1987;34:267–85.CAS 

    Google Scholar 
    Buesseler KO. The decoupling of production and particulate export in the surface ocean. Glob Biogeochem Cycle. 1998;12:297–310.CAS 

    Google Scholar 
    Schlitzer R. Applying the adjoint method for biogeochemical modeling: export of particulate organic matter in the world ocean. In: Kasibhata P, editor. Inverse Methods in Global biogeochemical Cycles. Washington, DC: American Geophysical Union; 2000. p. 114:107–24.Steinberg DK, Van Mooy BAS, Buesseler KO, Boyd PW, Kobari T, Karl DM. Bacterial vs. zooplankton control of sinking particle flux in the ocean’s twilight zone. Limnol Oceanogr. 2008;53:1327–38.
    Google Scholar 
    Cho BC, Azam F. Major role of bacteria in biogeochemical fluxes in the ocean’s interior. Nature. 1988;332:441–3.CAS 

    Google Scholar 
    Herndl GJ, Reinthaler T. Microbial control of the dark end of the biological pump. Nat Geosci. 2013;6:718–24.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Bergh Ø, Borsheim KY, Bratbak G, Heldal M. High abundance of viruses found in aquatic environments. Nature. 1989;340:467–8.CAS 
    PubMed 

    Google Scholar 
    Suttle CA. Viruses in the sea. Nature. 2005;437:356–61.CAS 
    PubMed 

    Google Scholar 
    Zhang R, Wei W, Cai L. The fate and biogeochemical cycling of viral elements. Nat Rev Microbiol. 2014;12:850–1.CAS 
    PubMed 

    Google Scholar 
    Middelboe M, Lyck PG. Regeneration of dissolved organic matter by viral lysis in marine microbial communities. Aquat Micro Ecol. 2002;27:187–94.
    Google Scholar 
    Weinbauer MG, Brettar I, Hofle MG. Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters. Limnol Oceanogr. 2003;48:1457–65.
    Google Scholar 
    Fuhrman JA. Marine viruses and their biogeochemical and ecological effects. Nature. 1999;399:541–8.CAS 
    PubMed 

    Google Scholar 
    Jover LF, Effler TC, Buchan A, Wilhelm SW, Weitz JS. The elemental composition of virus particles: implications for marine biogeochemical cycles. Nat Rev Microbiol. 2014;12:519–28.CAS 
    PubMed 

    Google Scholar 
    Bongiorni L, Magagnini M, Armeni M, Noble R, Danovaro R. Viral production, decay rates, and life strategies along a trophic gradient in the North Adriatic Sea. Appl Environ Microbiol. 2005;71:6644–50.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Weinbauer MG, Bettarel Y, Cattaneo R, Luef B, Maier C, Motegi C, et al. Viral ecology of organic and inorganic particles in aquatic systems: avenues for further research. Aquat Micro Ecol. 2009;57:321–41.CAS 

    Google Scholar 
    Tian Y, Cai L, Xu Y, Luo T, Zhao Z, Wang Q, et al. Stability and infectivity of allochthonous viruses in deep sea: A long-term high pressure simulation experiment. Deep-Sea Res Part I-Oceanogr Res Pap. 2020;161:103302.
    Google Scholar 
    Lara E, Vaqué D, Sà EL, Boras JA, Gomes A, Borrull E, et al. Unveiling the role and life strategies of viruses from the surface to the dark ocean. Sci Adv. 2017;3:e1602565.PubMed 
    PubMed Central 

    Google Scholar 
    Zhang R, Li Y, Yan W, Wang Y, Cai L, Luo T, et al. Viral control of biomass and diversity of bacterioplankton in the deep sea. Commun Biol. 2020;3:256.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Woźniak SB, Stramski D, Stramska M, Reynolds RA, Wright VM, Miksic EY, et al. Optical variability of seawater in relation to particle concentration, composition, and size distribution in the nearshore marine environment at Imperial Beach, California. J Geophys Res. 2010;115:C08027.
    Google Scholar 
    White AE, Letelier RM, Whitmire AL, Barone B, Bidigare RR, Church MJ, et al. Phenology of particle size distributions and primary productivity in the North Pacific subtropical gyre (Station ALOHA). J Geophys Res-Oceans. 2015;120:7381–99.PubMed 
    PubMed Central 

    Google Scholar 
    Vaulot D, Courties C, Partensky F. A simple method to preserve oceanic phytoplankton for flow cytometric analyses. Cytom Part A. 1989;10:629–35.CAS 

    Google Scholar 
    Chen X, Liu H, Weinbauer M, Chen B, Jiao N. Viral dynamics in the surface water of the western South China Sea in summer 2007. Aquat Micro Ecol. 2011;63:145–60.
    Google Scholar 
    Wei W, Zhang R, Peng L, Liang Y, Jiao N. Effects of temperature and photosynthetically active radiation on virioplankton decay in the western Pacific Ocean. Sci Rep. 2018;8:1525–34.PubMed 
    PubMed Central 

    Google Scholar 
    Marie D, Partensky F, Vaulot D, Brussaard C. Numeration of phytoplankton, bacteria and viruses in marine samples. Curr Protoc Cytom. 1999;11:1–15.
    Google Scholar 
    Marie D, Brussaard CPD, Thyrhaug R, Bratbak G, Vaulot D. Enumeration of marine viruses in culture and natural samples by flow cytometry. Appl Environ Microbiol. 1999;65:45–52.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Brussaard CP. Optimization of procedures for counting viruses by flow cytometry. Appl Environ Microbiol. 2004;70:1506–13.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Wilhelm SW, Brigden SM, Suttle CA. A dilution technique for the direct measurement of viral production: a comparison in stratified and tidally mixed coastal waters. Micro Ecol. 2002;43:168–73.CAS 

    Google Scholar 
    Weinbauer MG, Rowe JM, Wilhelm SW. Determining rates of virus production in aquatic systems by the virus reduction approach. In: Wilhelm SW, Weinbauer MG, Suttle CA. (eds). Manual of Aquatic Viral Ecology. American Society of Limnology and Oceanography Inc., Waco, TX: 2010. p. 1–8.Chen X, Wei W, Wang J, Li H, Sun J, Ma R, et al. Tide driven microbial dynamics through virus-host interactions in the estuarine ecosystem. Water Res. 2019;160:118–29.CAS 
    PubMed 

    Google Scholar 
    Luef B, Luef F, Peduzzi P. Online program ‘vipcal’ for calculating lytic viral production and lysogenic cells based on a viral reduction approach. Environ Microbiol Rep. 2009;1:78–85.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Winget DM, Helton RR, Williamson KE, Bench SR, Williamson SJ. Repeating patterns of virioplankton production within an estuarine ecosystem. Proc Natl Acad Sci USA. 2011;108:11506–11.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Wei W, Wang N, Cai L, Zhang C, Jiao N, Zhang R. Impacts of freshwater and seawater mixing on the production and decay of virioplankton in a subtropical estuary. Micro Ecol. 2019;78:843–54.CAS 

    Google Scholar 
    Noble RT, Fuhrman JA. Virus decay and its causes in coastal waters. Appl Environ Microbiol. 1997;63:77–83.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Suttle CA, Chen F. Mechanisms and rates of decay of marine viruses in seawater. Appl Environ Microbiol. 1992;58:3721–9.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Rowe JM, Saxton MA, Cottrell MT, DeBruyn JM, Berg GM, Kirchman DL, et al. Constraints on viral production in the Sargasso Sea and North Atlantic. Aquat Micro Ecol. 2008;52:233–44.
    Google Scholar 
    Evans C, Pearce I, Brussaard CP. Viral-mediated lysis of microbes and carbon release in the sub-Antarctic and Polar Frontal zones of the Australian Southern Ocean. Environ Microbiol. 2009;11:2924–34.CAS 
    PubMed 

    Google Scholar 
    De Corte D, Sintes E, Winter C, Yokokawa T, Reinthaler T, Herndl GJ. Links between viral and prokaryotic communities throughout the water column in the (sub)tropical Atlantic Ocean. ISME J. 2010;4:1431–42.PubMed 

    Google Scholar 
    Li Y, Lou T, Sun J, Cai L, Liang Y, Jiao N, et al. Lytic viral infection of bacterioplankton in deep waters of the western Pacific Ocean. Biogeosciences. 2014;11:2531–42.
    Google Scholar 
    Liang Y, Zhang Y, Zhang Y, Luo T, Rivkin R, Jiao N. Distributions and relationships of virio- and picoplankton in the epi-, meso- and bathypelagic zones of the Western Pacific Ocean. FEMS Microbiol Ecol. 2017;93:fiw238.PubMed 

    Google Scholar 
    Wommack KE, Colwell RR. Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev. 2000;64:69–114.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Parikka KJ, Le Romancer M, Wauters N, Jacquet S. Deciphering the virus-to-prokaryote ratio (VPR): insights into virus-host relationships in a variety of ecosystems. Biol Rev. 2016;92:1081–1100.PubMed 

    Google Scholar 
    Parada V, Herndl GJ, Weinbauer MG. Viral burst size of heterotrophic prokaryotes in aquatic systems. J Mar Biol Assoc UK. 2006;86:613–21.
    Google Scholar 
    Yuan D. A numerical study of the South China Sea deep circulation and its relation to the Luzon Strait transport. Acta Oceano Sin. 2002;21:187–202.
    Google Scholar 
    Tian J, Yang Q, Zhao W. Enhanced diapycnal mixing in the South China Sea. J Phys Oceanogr. 2009;39:3191–203.
    Google Scholar 
    Alford MH, Lien R, Simmons H, Klymak J, Ramp S, Yang YJ, et al. Speed and evolution of nonlinear internal waves transiting the South China Sea. J Phys Oceanogr. 2010;40:1338–55.
    Google Scholar 
    Parada V, Sintes E, Van Aken HM, Weinbauer MG, Herndl GJ. Viral abundance, decay, and diversity in the meso- and bathypelagic waters of the north atlantic. Appl Environ Microbiol. 2007;73:4429–38.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    De Corte D, Sintes E, Yokokawa T, Reinthaler T, Herndl GJ. Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME J. 2012;6:1566–77.PubMed 
    PubMed Central 

    Google Scholar 
    Zachary A. An ecological study of bacteriophages of Vibrio natriegens. Appl Environ Microbiol. 1978;24:321–4.CAS 

    Google Scholar 
    Motegi C, Nagata T. Enhancement of viral production by addition of nitrogen or nitrogen plus carbon in subtropical surface waters of the South Pacific. Aquat Micro Ecol. 2007;48:27.
    Google Scholar 
    Bratbak G, Egge JK, Heldal M. Viral mortality of the marine alga Emiliania huxleyi (Haptophyceae) and termination of algal blooms. Mar Ecol-Prog Ser. 1993;93:39–48.
    Google Scholar 
    Motegi C, Kaiser K, Benner R, Weinbauer MG. Effect of P-limitation on prokaryotic and viral production in surface waters of the Northwestern Mediterranean Sea. J Plankton Res. 2015;37:16–20.CAS 

    Google Scholar 
    Hewson I, O’Neil JM, Fuhrman JA, Dennison WC. Virus-like particle distribution and abundance in sediments and overmaying waters along eutrophication gradients in two subtropical estuaries. Limnol Oceanogr. 2001;46:1734–46.
    Google Scholar 
    Wilson WH, Mann NH. Lysogenic and lytic viral production in marine microbial communities. Aquat Micro Ecol. 1997;13:95–100.
    Google Scholar 
    Paul JH. Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? ISME J. 2008;2:579–89.CAS 
    PubMed 

    Google Scholar 
    Chibani-Chennoufi S, Bruttin A, Dillmann ML, Brussow H. Phage-host interaction: an ecological perspective. J Bacteriol. 2004;186:3677–86.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Weinbauer MG. Ecology of prokaryotic viruses. FEMS Microbiol Rev. 2004;28:127–81.CAS 
    PubMed 

    Google Scholar 
    Williamson SJ, Paul JH. Nutrient stimulation of lytic phage production in bacterial populations of the Gulf of Mexico. Aquat Micro Ecol. 2004;36:9–17.
    Google Scholar 
    Williamson SJ, Paul JH. Environmental factors that influence the transition from lysogenic to lytic existence in the ϕHSIC/Listonella pelagia marine phage–host system. Micro Ecol. 2006;52:217–25.CAS 

    Google Scholar 
    Cissoko M, Desnues A, Bouvy M, Sime-Ngando T, Verling E, Bettarel Y. Effects of freshwater and seawater mixing on virio- and bacterioplankton in a tropical estuary. Freshw Biol. 2008;53:1154–62.
    Google Scholar 
    Bettarel Y, Bouvier T, Agis M, Bouvier C, Van Chu T, Combe M, et al. Viral distribution and life strategies in the Bach Dang Estuary, Vietnam. Micro Ecol. 2011;62:143–54.
    Google Scholar 
    Shkilnyj P, Koudelka GB. Effect of salt shock on stability of λimm434 lysogens. J Bacteriol. 2007;189:3115–23.CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Tuomi P, Fagerbakke KM, Bratbak G, Heldal M. Nutritional enrichment of a microbial community: the effects on activity, elemental composition, community structure and virus production. FEMS Microbiol Ecol. 1995;16:23–134.
    Google Scholar 
    Dell’Anno A, Corinaldesi C, Danovaro R. Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning. Proc Natl Acad Sci USA. 2015;112:E2014–E2019.PubMed 
    PubMed Central 

    Google Scholar 
    Mojica KD, Brussaard CP. Factors affecting virus dynamics and microbial host-virus interactions in marine environments. FEMS Microbiol Ecol. 2014;89:495–515.CAS 
    PubMed 

    Google Scholar 
    Zweifel UL. Factors controlling accumulation of labile dissolved organic carbon in the Gulf of Riga. Estuar Coast Shelf Sci. 1999;48:357–70.CAS 

    Google Scholar 
    Pomeroy LR, Wiebe WJ. Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria. Aquat Micro Ecol. 2001;23:187–204.
    Google Scholar 
    Ploug H, Grossart H, Azam F, Jørgensen BB. Photosynthesis, respiration, and carbon turnover in sinking marine snow from surface waters of Southern California Bight: implications for the carbon cycle in the ocean. Mar Ecol-Prog Ser. 1999;179:1–11.CAS 

    Google Scholar 
    Azam F, Malfatti F. Microbial structuring of marine ecosystems. Nature. 2007;5:782–91.CAS 

    Google Scholar 
    De Corte D, Sintes E, Yokokawa T, Lekunberri I, Herndl GJ. Large-scale distribution of microbial and viral populations in the South Atlantic Ocean. Environ Microbiol Rep. 2016;8:305–15.PubMed 
    PubMed Central 

    Google Scholar 
    Yang YH, Yokokawa T, Motegi C, Nagata T. Large-scale distribution of viruses in deep waters of the Pacific and Southern Oceans. Aquat Micro Ecol. 2014;71:193–202.
    Google Scholar 
    Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, et al. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. ISME J. 2015;9:2386–99.PubMed 
    PubMed Central 

    Google Scholar 
    Martinez-Hernandez F, Fornas Ò, Lluesma Gomez M, Garcia-Heredia I, Maestre-Carballa L, López-Pérez M, et al. Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean. ISME J. 2019;13:232–6.CAS 
    PubMed 

    Google Scholar 
    Mruwat N, Carlson MCG, Goldin S, Ribalet F, Kirzner S, Hulata Y, et al. A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances. ISME J. 2021;15:41–54.CAS 
    PubMed 

    Google Scholar 
    Peduzzi P, Weinbauer M. Effect of concentrating the virus-rich 2–200 nm size fraction of seawater on the formation of algal flocs (marine snow). Limnol Oceanogr. 1993;38:1562–5.
    Google Scholar 
    Uitz J, Stramski D, Baudoux A, Reynolds RA, Wright VM, Dubranna J, et al. Variations in the optical properties of a particle suspension associated with viral infection of marine bacteria. Limnol Oceanogr. 2010;55:2317–30.
    Google Scholar 
    Sullivan MB, Weitz JS, Wilhelm SW. Viral ecology comes of age. Environ Microbiol Rep. 2017;9:33–35.PubMed 

    Google Scholar 
    Laber CP, Hunter JE, Carvalho F, Collins JR, Hunter EJ, Schieler BM, et al. Coccolithovirus facilitation of carbon export in the North Atlantic. Nat Microbiol. 2018;3:537–47.CAS 
    PubMed 

    Google Scholar 
    Kranzler CF, Brzezinski MA, Cohen NR, Lampe RH, Maniscalco M, Till CP, et al. Impaired viral infection and reduced mortality of diatoms in iron-limited oceanic regions. Nat Geosci. 2021;4:231–7.
    Google Scholar 
    Hewson I, Fuhrman JA. Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic waters. Micro Ecol. 2003;46:337–47.CAS 

    Google Scholar  More

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    A biologging database of juvenile white sharks from the northeast Pacific

    Tagging deployments and study subjectsTable 1 contains an overview of the fields in the metadata file (JWS_metadata.xlsx) providing extensive background details on each of the 79 tag deployments and 63 study subjects. The data in this file give essential contextual information needed to understand the methodological, environmental, and demographic factors surrounding the deployments, which are critical for further examination and hypothesis testing of the sensor data. These metadata fall into several specific categories, but are not limited to, (i) information on the deployed electronic devices (platform, model, Platform Transmitter Terminal identifications), (ii) sharks (unique identifying numbers, sex, length), (iii) capture event (date, location, duration, methodology, interaction type), and (iv) the reporting period (duration, linear surface travel distance).Table 1 Metadata descriptions of the sharks, tagging operations, and deployments for all tags included in the database.Full size tableFigure 1 illustrates a typical C. carcharias tagging operation. This involves a contracted commercial fishing vessel with purpose-built gears to capture sharks (Fig. 1a) and a research crew to handle animals, monitor health (Fig. 1b) and attach electronic tags (Fig. 1c). More details on the tagging program and its methodologies are provided elsewhere14,19,20. Figure. 2 provides summaries of the deployment schedule, geographic locations, devices, and capture operations. Of note, 39.7% (25/64) of all tagging operations involved collaborations with commercial fishery operators (Fig. 2f–h), whose engagement was temporarily impacted (Fig. 2a) during the scientific review process when the population was under consideration for US Endangered Species Act listing. Figure 3 displays the demographic focus on small juvenile C. carcharias, with modest deployment durations and travel distances.Fig. 1Depiction of a typical research operation for capturing and tagging juvenile White Sharks in the Southern California Bight. (a) Aquarium research vessel (RV Lucile) with crew approaching a contracted purse seine vessel containing a captured juvenile white shark. (b) Research crew on the RV Lucile leading the shark into a sling, where it is subsequently transferred to the vessel’s deck for tagging. (c) Successfully applied PAT and acoustic tags each positioned lateral of the dorsal fin, anchored via leaders, and affixed with titanium darts (yellow arrows). All images taken by Steve McNicholas (Great White Shark 3D) for the Monterey Bay Aquarium and used with permission.Full size imageFig. 2Metadata summaries of the field program that deployed biologging tags on juvenile white sharks in the southern California Current. (a) Deployment schedule for 72 electronic tags released on 64 White Sharks from 2001–2020 (b) Tagging activity peaked in the late summer months when the population is most locally abundant. Field operations decreased from 2011–2013 when the population was being considered for listing under the U.S. Endangered Species Act (ESA). (c) Deployments focused on opportunities in the Southern California Bight coastline and included deployments in the nursery area of Bahía Sebastian Vizcaíno, Mexico and releases after exhibition at the Monterey Bay Aquarium. (d) Researchers released a variety of pop-up archival transmitting (PAT, 58 sharks), acoustic (21 sharks), and smart position and temperature (SPOT, 20 sharks) tags. This manuscript only reports the geolocation, temperature and depth data from the PAT and SPOT platforms. (e) Half (35 of 64, 54.7%) of all sharks received multiple tags, primarily to compare their relative performance. (f) Most tags (38 of 64, 60.3%) were deployed during focused scientific research operations. (g) The remainder were joint operations resulting from opportunistic bycatch in commercial fisheries using various gears and (h) Targeting various species. “Jab” gear refers to research operations that uses pole extensions to apply tags to sharks without capturing and handling.Full size imageFig. 3Demographic and deployment summaries from the juvenile white shark tagging program. (a) Total body length (TL) histogram indicates that most individuals tagged were either neonates ( More

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    Direct and latent effects of ocean acidification on the transition of a sea urchin from planktonic larva to benthic juvenile

    Kwiatkowski, L. et al. Twenty-first century ocean warming, acidification, deoxygenation, and upper-ocean nutrient and primary production decline from CMIP6 model projections. Biogeosciences 17, 3439–3470 (2020).ADS 
    CAS 

    Google Scholar 
    Intergovernmental Panel on Climate Change. Climate Change 2013: 5th Assessment Report of the Intergovernmental Panel on Climate Change (Cambridge University Press, 2013).
    Google Scholar 
    Torres, O., Kwiatkowski, L., Sutton, A. J., Dorey, N. & Orr, J. C. Characterizing mean and extreme diurnal variability of ocean CO2 system variables across marine environments. Geophys. Res. Lett. 48, 2 (2021).
    Google Scholar 
    Dorey, N., Lançon, P., Thorndyke, M. & Dupont, S. Assessing physiological tipping point of sea urchin larvae exposed to a broad range of pH. Glob. Change Biol. 19, 3355–3367 (2013).
    Google Scholar 
    Hauri, C. et al. Spatiotemporal variability and long-term trends of ocean acidification in the California current system. Biogeosci. Discuss. 9, 10371–10428 (2012).ADS 

    Google Scholar 
    Dupont, S. & Pörtner, H.-O. A snapshot into ocean acidification research. Mar. Biol. 160, 1765–1771 (2013).CAS 

    Google Scholar 
    Dupont, S. & Thorndyke, M. Chapter: Direct impacts of near-future ocean acidification on sea urchins. in Climate Change Perspective from the Atlantic: Past, Present and Future (eds. Fernández-Palacios, J. et al.) 461–485 (2013).Byrne, M. & Hernández, J. C. Chapter 16: Sea urchins in a high CO2 world: Impacts of climate warming and ocean acidification across life history stages. in Developments in Aquaculture and Fisheries Science vol. 43 281–297 (Elsevier, 2020).Kroeker, K. J., Kordas, R. L., Crim, R. N. & Singh, G. G. Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms. Ecol. Lett. 13, 1419–1434 (2010).PubMed 

    Google Scholar 
    L. Kelley, A., J. Lunden, J., 1 Ocean Acidification Research Center, College of Fisheries and Ocean Sciences, University of Alaska, Fairbanks, Fairbanks, AK, 99775, USA, & 2 Haverford College, Haverford, PA, 19041, USA. Meta-analysis identifies metabolic sensitivities to ocean acidification. AIMS Environ. Sci. 4, 709–729 (2017).Stumpp, M. et al. Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification. Proc. Natl. Acad. Sci. U. S. A. 109, 18192–18197 (2012).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Stumpp, M. et al. Digestion in sea urchin larvae impaired under ocean acidification. Nat. Clim. Change 3, 1044–1049 (2013).ADS 
    CAS 

    Google Scholar 
    Runcie, D. E. et al. Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biol. Evol. 8, 272 (2017).
    Google Scholar 
    Sewell, M. Utilization of lipids during early development of the sea urchin Evechinus chloroticus. Mar. Ecol. Prog. Ser. 304, 133–142 (2005).ADS 
    CAS 

    Google Scholar 
    Lucas, M. I., Walker, G., Holland, D. L. & Crisp, D. J. An energy budget for the free-swimming and metamorphosing larvae of Balanus balanoides (Crustacea: Cirripedia). Mar. Biol. 55, 221–229 (1979).
    Google Scholar 
    Shilling, F. M., Hoegh-Guldberg, O. & Manahan, D. T. Sources of energy for increased metabolic demand during metamorphosis of the abalone Haliotis rufescens (Mollusca). Biol. Bull. 191, 402–412 (1996).CAS 
    PubMed 

    Google Scholar 
    Meidel, S. K. & Scheibling, R. E. Effects of food type and ration on reproductive maturation and growth of the sea urchin Strongylocentrotus droebachiensis. Mar. Biol. 134, 155–166 (1999).
    Google Scholar 
    Pearce, C. M. & Scheibling, R. E. Induction of metamorphosis of larvae of the green sea urchin, Strongylocentrotus droebachiensis by coralline red algae. Biol. Bull. 179, 304–311 (1990).CAS 
    PubMed 

    Google Scholar 
    Gosselin, P. & Jangoux, M. From competent larva to exotrophic juvenile: a morphofunctional study of the perimetamorphic period of Paracentrotus lividus (Echinodermata, Echinoida). Zoomorphology 118, 31–43 (1998).
    Google Scholar 
    Hinegardner, R. T. Growth and development of the laboratory cultured sea urchin. Biol. Bull. 137, 465–475 (1969).CAS 
    PubMed 

    Google Scholar 
    Strathmann, R. R. Length of pelagic period in echinoderms with feeding larvae from the Northeast Pacific. J. Exp. Biol. Ecol. 34, 23–27 (1978).
    Google Scholar 
    Byrne, M. et al. Unshelled abalone and corrupted urchins: Development of marine calcifiers in a changing ocean. Proc. Biol. Sci. 278, 2376–2383 (2011).PubMed 

    Google Scholar 
    Dupont, S., Dorey, N., Stumpp, M., Melzner, F. & Thorndyke, M. Long-term and trans-life-cycle effects of exposure to ocean acidification in the green sea urchin Strongylocentrotus droebachiensis. Mar. Biol. 160, 1835–1843 (2013).CAS 

    Google Scholar 
    Uthicke, S. et al. Impacts of ocean acidification on early life-history stages and settlement of the coral-eating sea star Acanthaster planci. PLoS ONE 8, e82938 (2013).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Dupont, S., Lundve, B. & Thorndyke, M. Near future ocean acidification increases growth rate of the lecithotrophic larvae and juveniles of the sea star Crossaster papposus. J. Exp. Zool. Mol. Dev. Evol. 314, 382–389 (2010).
    Google Scholar 
    Lim, Y.-K., Dang, X. & Thiyagarajan, V. Transgenerational responses to seawater pH in the edible oyster, with implications for the mariculture of the species under future ocean acidification. Sci. Total Environ. 782, 146704 (2021).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Hettinger, A. et al. Persistent carry-over effects of planktonic exposure to ocean acidification in the Olympia oyster. Ecology 93, 2758–2768 (2012).PubMed 

    Google Scholar 
    Hettinger, A. et al. Larval carry-over effects from ocean acidification persist in the natural environment. Glob. Change Biol. https://doi.org/10.1111/gcb.12307 (2013).Article 

    Google Scholar 
    Albright, R. & Langdon, C. Ocean acidification impacts multiple early life history processes of the Caribbean coral Porites astreoides. Glob. Change Biol. 17, 2478–2487 (2011).ADS 

    Google Scholar 
    Yuan, X. et al. Elevated CO2 delays the early development of scleractinian coral Acropora gemmifera. Sci. Rep. 8, 2787 (2018).ADS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Maboloc, E. A. & Chan, K. Y. K. Parental whole life cycle exposure modulates progeny responses to ocean acidification in slipper limpets. Glob. Change Biol. 2, 15647. https://doi.org/10.1111/gcb.15647 (2021).Article 

    Google Scholar 
    Mos, B., Byrne, M. & Dworjanyn, S. A. Effects of low and high pH on sea urchin settlement, implications for the use of alkali to counter the impacts of acidification. Aquaculture 528, 735618 (2020).CAS 

    Google Scholar 
    Harianto, J., Aldridge, J., Torres Gabarda, S. A., Grainger, R. J. & Byrne, M. Impacts of acclimation in warm-low pH conditions on the physiology of the sea urchin Heliocidaris erythrogramma and carryover effects for juvenile offspring. Front. Mar. Sci. 7, 588938 (2021).
    Google Scholar 
    Houlihan, E. P., Espinel-Velasco, N., Cornwall, C. E., Pilditch, C. A. & Lamare, M. D. Diffusive boundary layers and ocean acidification: Implications for sea urchin settlement and growth. Front. Mar. Sci. 7, 577562 (2020).
    Google Scholar 
    Norderhaug, K. M. & Christie, H. C. Sea urchin grazing and kelp re-vegetation in the NE Atlantic. Mar. Biol. Res. 5, 515–528 (2009).
    Google Scholar 
    Dickson, A., Sabine, C. L. & Christian, J. R. Guide to best practices for ocean CO2 measurements. (PICES Special Publication 3;191 pp, 2007).Lavigne, H. & Gattuso, J.-P. seacarb: seawater carbonate chemistry with R. R package version 2.4. http://CRAN.R-project.org/package=seacarb. (2011).R Core Team. R: A language and environment for statistical computing. R: A language and environment for statistical computing (2017).Guillard, R. R. L. & Ryther, J. H. Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea (Cleve) Gran. Can. J. Microbiol. 8, 229–239 (1962).CAS 
    PubMed 

    Google Scholar 
    Stumpp, M., Wren, J., Melzner, F., Thorndyke, M. & Dupont, S. CO2 induced seawater acidification impacts sea urchin larval development I: Elevated metabolic rates decrease scope for growth and induce developmental delay. Comp. Biochem. Physiol. Mol. Integr. Physiol. 160, 331–340 (2011).CAS 

    Google Scholar 
    His, E., Heyvang, I., Geffard, O. & De Montaudouin, X. A comparison between oyster (Crassostrea gigas) and sea urchin (Paracentrotus lividus) larval bioassays for toxicological studies. Water Res. 33, 1706–1718 (1999).CAS 

    Google Scholar 
    U. S. National Institutes of Health, Bethesda, Maryland, U. ImageJ, Rasband, W.S., http://imagej.nih.gov/ij/.Smith, M. M., Cruz Smith, L., Cameron, R. A. & Urry, L. The larval stages of the sea urchin, Strongylocentrotus purpuratus. J. Morphol. 269, 713–733 (2008).PubMed 

    Google Scholar 
    Kahm, M., Hasenbrink, G., Lichtenberg-Frate, H., Ludwig, J. & Kschischo, M. grofit: Fitting Biological Growth Curves with R. J. Stat. Softw., 33(7), 1–21. URL http://www.jstatsoft.org/v33/i07/. (2010).Pinheiro, J., Bates, D., & R-core. Package ‘nlme’: Linear and Nonlinear Mixed Effects Models. Cran-R (2018).Pan, T.-C.F., Applebaum, S. L. & Manahan, D. T. Experimental ocean acidification alters the allocation of metabolic energy. Proc. Natl. Acad. Sci. U. S. A. 112, 4696–4701 (2015).ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 
    Jager, T., Ravagnan, E. & Dupont, S. Near-future ocean acidification impacts maintenance costs in sea-urchin larvae: Identification of stress factors and tipping points using a DEB modelling approach. J. Exp. Mar. Biol. Ecol. 474, 11–17 (2016).
    Google Scholar 
    Hoegh-Guldberg, O. & Emlet, R. B. Energy use during the development of a lecithotrophic and a planktotrophic echinoid. Biol. Bull. 192, 27–40 (1997).CAS 
    PubMed 

    Google Scholar 
    Vaïtilingon, D. et al. Effects of delayed metamorphosis and food rations on the perimetamorphic events in the echinoid Paracentrotus lividus (Lamarck, 1816) (Echinodermata). J. Exp. Mar. Biol. Ecol. 262, 41–60 (2001).
    Google Scholar 
    García, E., Clemente, S. & Hernández, J. C. Ocean warming ameliorates the negative effects of ocean acidification on Paracentrotus lividus larval development and settlement. Mar. Environ. Res. 110, 61–68 (2015).PubMed 

    Google Scholar 
    Wangensteen, O. S., Dupont, S., Casties, I., Turon, X. & Palacín, C. Some like it hot: Temperature and pH modulate larval development and settlement of the sea urchin Arbacia lixula. J. Exp. Mar. Biol. Ecol. 449, 304–311 (2013).
    Google Scholar 
    García, E., Clemente, S. & Hernández, J. C. Effects of natural current pH variability on the sea urchin Paracentrotus lividus larvae development and settlement. Mar. Environ. Res. 139, 11–18 (2018).PubMed 

    Google Scholar 
    Marshall, D. J. & Keough, M. J. Variation in the dispersal potential of non-feeding invertebrate larvae: The desperate larva hypothesis and larval size. Mar. Ecol. Prog. Ser. 255, 145–153 (2003).ADS 

    Google Scholar 
    Huggett, M. J., Williamson, J. E., de Nys, R., Kjelleberg, S. & Steinberg, P. D. Larval settlement of the common Australian sea urchin Heliocidaris erythrogramma in response to bacteria from the surface of coralline algae. Oecologia 149, 604–619 (2006).ADS 
    PubMed 

    Google Scholar 
    Espinel-Velasco, N., Agüera, A. & Lamare, M. Sea urchin larvae show resilience to ocean acidification at the time of settlement and metamorphosis. Mar. Environ. Res. 159, 104977 (2020).CAS 
    PubMed 

    Google Scholar 
    Lamare, M. & Barker, M. Settlement and recruitment of the New Zealand sea urchin Evechinus chloroticus. Mar. Ecol. Prog. Ser. 218, 153–166 (2001).ADS 

    Google Scholar 
    Martin, S. et al. Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification. J. Exp. Biol. 214, 1357–1368 (2011).CAS 
    PubMed 

    Google Scholar 
    Vargas, C. A. et al. Species-specific responses to ocean acidification should account for local adaptation and adaptive plasticity. Nat. Ecol. Evol. 1, 0084 (2017).
    Google Scholar 
    Espinel-Velasco, N. et al. Effects of ocean acidification on the settlement and metamorphosis of marine invertebrate and fish larvae: a review. Mar. Ecol. Prog. Ser. 606, 237–257 (2018).ADS 

    Google Scholar 
    Briffa, M., de la Haye, K. & Munday, P. L. High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Mar. Pollut. Bull. 64, 1519–1528 (2012).CAS 
    PubMed 

    Google Scholar 
    Gaylord, B. et al. Ocean acidification through the lens of ecological theory. Ecology 96, 3–15 (2015).PubMed 

    Google Scholar  More

  • in

    Life, death and cyanobacterial biogeography

    Flores, C. O. et al. Proc. Natl Acad. Sci. USA 108, 288–297 (2011).Article 

    Google Scholar 
    Carlson, M. C. G. et al. Nat. Microbiol. https://doi.org/10.1038/s41564-022-01088-x (2022).Article 

    Google Scholar 
    Flombaum, P. et al. Proc. Natl Acad. Sci. USA 110, 9824–9829 (2013).CAS 
    Article 

    Google Scholar 
    Coleman, M. L. & Chisholm, S. W. Trends Microbiol. 15, 398–407 (2007).CAS 
    Article 

    Google Scholar 
    Johnson, Z. I. et al. Science 311, 1737–1740 (2006).CAS 
    Article 

    Google Scholar 
    Martiny, A. C. et al. PLoS ONE 11, e0168291 (2016).Article 

    Google Scholar 
    Wilhelm, S. W. & Suttle, C. A. Bioscience 49, 781–788 (1999).Article 

    Google Scholar 
    Follett, C. L. et al. Proc. Natl Acad. Sci. USA 119, e2110993118 (2022).CAS 
    Article 

    Google Scholar 
    Mojica, K. D. A. et al. ISME J. 10, 500–513 (2016).CAS 
    Article 

    Google Scholar 
    Mruwat, N. et al. ISME J. 15, 41–54 (2021).CAS 
    Article 

    Google Scholar  More

  • in

    Tropical forests have big climate benefits beyond carbon storage

    NEWS
    01 April 2022

    Tropical forests have big climate benefits beyond carbon storage

    Study finds that trees cool the planet by one-third of a degree through biophysical mechanisms such as humidifying the air.

    Freda Kreier

    Freda Kreier

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    Tropical forests create cloud cover that reflects sunlight and cools the air.Credit: Thomas Marent/Minden Pictures

    Tropical forests have a crucial role in cooling Earth’s surface by extracting carbon dioxide from the air. But only two-thirds of their cooling power comes from their ability to suck in CO2 and store it, according to a study1. The other one-third comes from their ability to create clouds, humidify the air and release cooling chemicals.
    How much can forests fight climate change?
    This is a larger contribution than expected for these ‘biophysical effects’ says Bronson Griscom, a forest climate scientist at the non-profit environmental organization Conservation International, headquartered in Arlington, Virginia. “For a while now, we’ve assumed that carbon dioxide alone is telling us essentially all we need to know about forest–climate interactions,” he says. But this study confirms that tropical forests have other significant ways of plugging into the climate system, he says.The analysis, published in Frontiers in Forests and Global Change on 24 March1, could enable scientists to improve their climate models, while helping governments to devise better conservation and climate strategies.The findings underscore growing concerns about rampant deforestation across the tropics. Scientists warn that one-third of the world’s tropical forests have been mown down in the past few centuries, and another one-third has been degraded by logging and development. This, when combined with climate change, could transform vast swathes of forest into grasslands2.“This study gives us even more reasons why tropical deforestation is bad for the climate,” says Nancy Harris, forest-research director at the World Resources Institute in Washington DC.More than a carbon spongeForests are major players in the global carbon cycle because they soak up CO2 from the atmosphere as they grow. Tropical forests, in particular, store around one-quarter of all terrestrial carbon on the planet, making them “centrepieces for climate policy” in their home countries, Griscom says.
    Tropical forests may be carbon sources, not sinks
    “There’s clear evidence that the tropics are producing excellent climate benefits for the entire planet,” says Deborah Lawrence, an environmental scientist at the University of Virginia in Charlottesville and a co-author of the latest study. She and her colleagues analysed the cooling capacity of forests around the globe, in particular considering biophysical effects alongside carbon storage. Tropical forests, they found, can cool Earth by a whole 1 °C — and biophysical effects contribute significantly.Although scientists knew about these effects, they hadn’t understood to what extent the various factors counter global warming.Trees in the tropics provide shade, but they also act as giant humidifiers by pulling water from the ground and emitting it from their leaves, which helps to cool the surrounding area in a way similar to sweating, Griscom says.“If you go into a forest, it immediately is a considerably cooler environment,” he says.This transpiration, in turn, creates the right conditions for clouds, which like snow and ice in the Arctic, can reflect sunlight higher into the atmosphere and further cool the surroundings. Trees also release organic compounds — for example, pine-scented terpenes — that react with other chemicals in the atmosphere to sometimes create a net cooling effect.Locally coolTo quantify these effects, Lawrence and her colleagues compared how the various effects of forests around the world feed into the climate system, breaking down their contributions in bands of ten degrees of latitude. When they considered only the biophysical effects, the researchers found that the world’s forests collectively cool the surface of the planet by around 0.5 °C.
    When will the Amazon hit a tipping point?
    Tropical forests are responsible for most of that cooling. But this band of trees across Latin America, Central Africa and southeast Asia is under increasing pressure from climate change and deforestation. Both of these human-caused impacts can lead rainforests to dry out, says Christopher Boulton, a geographer at the University of Exeter, UK. Last month, he and his colleagues published a review2 of nearly 30 years’ worth of satellite images of the Amazon, the largest rainforest in the world. By measuring the biomass of the vegetation in the images, the team discovered that three-quarters of the Amazon is losing resilience — the ability to recover from an extreme weather event such as a drought.Threats to tropical rainforests are dangerous not only for the global climate, but also for communities that neighbour the forests, Lawrence says. She and her colleagues found that the cooling caused by biophysical effects was especially significant locally. Having a rainforest nearby can help to protect an area’s agriculture and cities from heatwaves, Lawrence says. “Every tenth of a degree matters in limiting extreme weather. And where you have forests, the extremes are minimized.”Governments across the tropics have struggled to conserve their forests despite more than two decades of global campaigns to halt deforestation, promote sustainable development and protect the climate. Lawrence says that her team’s findings make it clear that protecting forests is a matter of self-interest, and has immediate benefits for local communities.

    doi: https://doi.org/10.1038/d41586-022-00934-6

    ReferencesLawrence, D., Coe, M., Walker, W., Verchot, L. & Vandecar, K. Front. For. Glob. Change https://doi.org/10.3389/ffgc.2022.756115 (2022).Article 

    Google Scholar 
    Boulton, C. A., Lenton, T. M. & Boers, N. Nature Clim. Change 12, 271–278 (2022).Article 

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    A global map of planting years of plantations

    FAO & UNEP. The state of the world’s forests 2020: Forests, biodiversity and people (2020).Brinck, K. et al. High resolution analysis of tropical forest fragmentation and its impact on the global carbon cycle. Nature Communications 8, 1–6 (2017).ADS 

    Google Scholar 
    Mitchard, E. T. The tropical forest carbon cycle and climate change. Nature 559, 527–534 (2018).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Hansen, M. C. et al. High-resolution global maps of 21st-century forest cover change. science 342, 850–853 (2013).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Tsujino, R., Yumoto, T., Kitamura, S., Djamaluddin, I. & Darnaedi, D. History of forest loss and degradation in Indonesia. Land use policy 57, 335–347 (2016).
    Google Scholar 
    Holl, K. D. & Brancalion, P. H. Tree planting is not a simple solution. Science 368, 580–581 (2020).ADS 
    CAS 
    PubMed 

    Google Scholar 
    Zhang, Y. et al. Multiple afforestation programs accelerate the greenness in the ‘Three North’ region of China from 1982 to 2013. Ecological Indicators 61, 404–412 (2016).
    Google Scholar 
    Soliño, M., Oviedo, J. L. & Caparrós, A. Are forest landowners ready for woody energy crops? Preferences for afforestation programs in Southern Spain. Energy Economics 73, 239–247 (2018).
    Google Scholar 
    Paquette, A. & Messier, C. The role of plantations in managing the world’s forests in the Anthropocene. Frontiers in Ecology and the Environment 8, 27–34 (2010).
    Google Scholar 
    Zulkefli, F., Syahlan, S. & Aziz, M. F. A. Negatives Impact Faced by Oil Palm Estate Management in managing Foreign Workers: A Case Study. International Journal of Academic Research in Business and Social Sciences 8 (2018).Fitzherbert, E. B. et al. How will oil palm expansion affect biodiversity? Trends in ecology & evolution 23, 538–545 (2008).
    Google Scholar 
    Vijay, V., Pimm, S. L., Jenkins, C. N. & Smith, S. J. The impacts of oil palm on recent deforestation and biodiversity loss. PloS one 11, e0159668 (2016).PubMed 
    PubMed Central 

    Google Scholar 
    Koh, L. P., Miettinen, J., Liew, S. C. & Ghazoul, J. Remotely sensed evidence of tropical peatland conversion to oil palm. Proceedings of the National Academy of Sciences 108, 5127–5132 (2011).ADS 
    CAS 

    Google Scholar 
    Guillaume, T. et al. Carbon costs and benefits of Indonesian rainforest conversion to plantations. Nature communications 9, 1–11 (2018).CAS 

    Google Scholar 
    Lucas-Borja, M. E., Hedo, J., Cerdá, A., Candel-Pérez, D. & Viñegla, B. Unravelling the importance of forest age stand and forest structure driving microbiological soil properties, enzymatic activities and soil nutrients content in Mediterranean Spanish black pine (Pinus nigra Ar. ssp. salzmannii) Forest. Science of the Total Environment 562, 145–154 (2016).ADS 
    CAS 

    Google Scholar 
    Besnard, S. et al. Quantifying the effect of forest age in annual net forest carbon balance. Environmental Research Letters 13, 124018 (2018).ADS 

    Google Scholar 
    Dzikiti, S. et al. Estimating the water requirements of high yielding and young apple orchards in the winter rainfall areas of South Africa using a dual source evapotranspiration model. Agricultural water management 208, 152–162 (2018).
    Google Scholar 
    Zhang, Y., Yao, Y., Wang, X., Liu, Y. & Piao, S. Mapping spatial distribution of forest age in China. Earth and Space Science 4, 108–116 (2017).ADS 

    Google Scholar 
    Chen, B., Jin, Y. & Brown, P. Automatic mapping of planting year for tree crops with Landsat satellite time series stacks. ISPRS Journal of Photogrammetry and Remote Sensing 151, 176–188 (2019).ADS 

    Google Scholar 
    Danylo, O. et al. A map of the extent and year of detection of oil palm plantations in Indonesia, Malaysia and Thailand. Scientific data 8, 1–8 (2021).
    Google Scholar 
    O’Brien, S. T., Hubbell, S. P., Spiro, P., Condit, R. & Foster, R. B. Diameter, height, crown, and age relationship in eight neotropical tree species. Ecology 76, 1926–1939 (1995).
    Google Scholar 
    Fichtler, E., Clark, D. A. & Worbes, M. Age and long-term growth of trees in an old-growth tropical rain forest, based on analyses of tree rings and 14C1. Biotropica 35, 306–317 (2003).
    Google Scholar 
    Zhang, C. et al. Mapping forest stand age in China using remotely sensed forest height and observation data. Journal of Geophysical Research: Biogeosciences 119, 1163–1179 (2014).ADS 

    Google Scholar 
    Wang, B., Li, M., Fan, W., Yu, Y. & Chen, J. M. Relationship between net primary productivity and forest stand age under different site conditions and its implications for regional carbon cycle study. Forests 9, 5 (2018).
    Google Scholar 
    Wang, S. et al. Relationships between net primary productivity and stand age for several forest types and their influence on China’s carbon balance. Journal of environmental management 92, 1651–1662 (2011).PubMed 

    Google Scholar 
    Gupta, N., Kukal, S., Bawa, S. & Dhaliwal, G. Soil organic carbon and aggregation under poplar based agroforestry system in relation to tree age and soil type. Agroforestry Systems 76, 27–35 (2009).
    Google Scholar 
    Huang, C. et al. An automated approach for reconstructing recent forest disturbance history using dense Landsat time series stacks. Remote Sensing of Environment 114, 183–198 (2010).ADS 

    Google Scholar 
    Thomas, N. E. et al. Validation of North American forest disturbance dynamics derived from Landsat time series stacks. Remote Sensing of Environment 115, 19–32 (2011).ADS 
    MathSciNet 

    Google Scholar 
    Ye, S., Rogan, J., Zhu, Z. & Eastman, J. R. A near-real-time approach for monitoring forest disturbance using Landsat time series: Stochastic continuous change detection. Remote Sensing of Environment 252, 112167 (2021).ADS 

    Google Scholar 
    Verbesselt, J., Hyndman, R., Newnham, G. & Culvenor, D. Detecting trend and seasonal changes in satellite image time series. Remote sensing of Environment 114, 106–115 (2010).ADS 

    Google Scholar 
    Kennedy, R. E., Yang, Z. & Cohen, W. B. Detecting trends in forest disturbance and recovery using yearly Landsat time series: 1. LandTrendr—Temporal segmentation algorithms. Remote Sensing of Environment 114, 2897–2910 (2010).ADS 

    Google Scholar 
    Cohen, W. B., Yang, Z., Healey, S. P., Kennedy, R. E. & Gorelick, N. A LandTrendr multispectral ensemble for forest disturbance detection. Remote sensing of environment 205, 131–140 (2018).ADS 

    Google Scholar 
    Vogeler, J. C., Braaten, J. D., Slesak, R. A. & Falkowski, M. J. Extracting the full value of the Landsat archive: Inter-sensor harmonization for the mapping of Minnesota forest canopy cover (1973–2015). Remote sensing of environment 209, 363–374 (2018).ADS 

    Google Scholar 
    de Jong, S. M. et al. Mapping mangrove dynamics and colonization patterns at the Suriname coast using historic satellite data and the LandTrendr algorithm. International Journal of Applied Earth Observation and Geoinformation 97, 102293 (2021).
    Google Scholar 
    Harris, N., Goldman, E. D. & Gibbes, S. Spatial database of planted trees (SDPT VERSION 1.0). Technical Note. (2019).Descals, A. et al. High-resolution global map of smallholder and industrial closed-canopy oil palm plantations. Earth System Science Data 13, 1211–1231 (2021).ADS 

    Google Scholar 
    Li, C. et al. The first all-season sample set for mapping global land cover with landsat-8 data. Science Bulletin 62, 508–515 (2017).ADS 

    Google Scholar 
    Masek, J. G. et al. A Landsat surface reflectance dataset for North America, 1990–2000. IEEE Geoscience and Remote Sensing Letters 3, 68–72 (2006).ADS 

    Google Scholar 
    Vermote, E., Justice, C., Claverie, M. & Franch, B. Preliminary analysis of the performance of the Landsat 8/OLI land surface reflectance product. Remote Sensing of Environment 185, 46–56 (2016).ADS 
    PubMed 

    Google Scholar 
    Foga, S. et al. Cloud detection algorithm comparison and validation for operational Landsat data products. Remote sensing of environment 194, 379–390 (2017).ADS 

    Google Scholar 
    Goulden, M. L. & Bales, R. C. California forest die-off linked to multi-year deep soil drying in 2012–2015 drought. Nature Geoscience 12, 632–637 (2019).CAS 

    Google Scholar 
    He, T. et al. Evaluating land surface albedo estimation from Landsat MSS, TM, ETM+, and OLI data based on the unified direct estimation approach. Remote Sensing of Environment 204, 181–196 (2018).ADS 

    Google Scholar 
    Flood, N. Continuity of reflectance data between Landsat-7 ETM+ and Landsat-8 OLI, for both top-of-atmosphere and surface reflectance: a study in the Australian landscape. Remote Sensing 6, 7952–7970 (2014).ADS 

    Google Scholar 
    Roy, D. P. et al. Characterization of Landsat-7 to Landsat-8 reflective wavelength and normalized difference vegetation index continuity. Remote sensing of Environment 185, 57–70 (2016).ADS 
    PubMed 

    Google Scholar 
    Key, C. & Benson, N. Landscape assessment: remote sensing of severity, the normalized burn ratio and ground measure of severity, the composite burn index. FIREMON: Fire effects monitoring and inventory system Ogden, Utah: USDA Forest Service, Rocky Mountain Res. Station (2005).Guo, J. & Gong, P. The potential of spectral indices in detecting various stages of afforestation over the Loess Plateau Region of China. Remote Sensing 10, 1492 (2018).ADS 

    Google Scholar 
    Kennedy, R. E. et al. Implementation of the LandTrendr algorithm on google earth engine. Remote Sensing 10, 691 (2018).ADS 

    Google Scholar 
    Yu, L. et al. A multi-resolution global land cover dataset through multisource data aggregation. Science China Earth Sciences 57, 2317–2329 (2014).ADS 

    Google Scholar 
    Du, Z. et al. A global map of planting years of plantations. figshare https://doi.org/10.6084/m9.figshare.19070084.v1 (2022).Gong, P. et al. Finer resolution observation and monitoring of global land cover: First mapping results with landsat tm and etm+ data. International Journal of Remote Sensing 34, 2607–2654 (2013).ADS 

    Google Scholar 
    Huang, H. et al. The migration of training samples towards dynamic global land cover mapping. ISPRS Journal of Photogrammetry and Remote Sensing 161, 27–36 (2020).ADS 

    Google Scholar  More