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    Artificial reef designed by MIT engineers could protect marine life, reduce storm damage

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    The beautiful, gnarled, nooked-and-crannied reefs that surround tropical islands serve as a marine refuge and natural buffer against stormy seas. But as the effects of climate change bleach and break down coral reefs around the world, and extreme weather events become more common, coastal communities are left increasingly vulnerable to frequent flooding and erosion.

    An MIT team is now hoping to fortify coastlines with “architected” reefs — sustainable, offshore structures engineered to mimic the wave-buffering effects of natural reefs while also providing pockets for fish and other marine life.

    The team’s reef design centers on a cylindrical structure surrounded by four rudder-like slats. The engineers found that when this structure stands up against a wave, it efficiently breaks the wave into turbulent jets that ultimately dissipate most of the wave’s total energy. The team has calculated that the new design could reduce as much wave energy as existing artificial reefs, using 10 times less material.

    The researchers plan to fabricate each cylindrical structure from sustainable cement, which they would mold in a pattern of “voxels” that could be automatically assembled, and would provide pockets for fish to explore and other marine life to settle in. The cylinders could be connected to form a long, semipermeable wall, which the engineers could erect along a coastline, about half a mile from shore. Based on the team’s initial experiments with lab-scale prototypes, the architected reef could reduce the energy of incoming waves by more than 95 percent.

    “This would be like a long wave-breaker,” says Michael Triantafyllou, the Henry L. and Grace Doherty Professor in Ocean Science and Engineering in the Department of Mechanical Engineering. “If waves are 6 meters high coming toward this reef structure, they would be ultimately less than a meter high on the other side. So, this kills the impact of the waves, which could prevent erosion and flooding.”

    Details of the architected reef design are reported today in a study appearing in the open-access journal PNAS Nexus. Triantafyllou’s MIT co-authors are Edvard Ronglan SM ’23; graduate students Alfonso Parra Rubio, Jose del Auila Ferrandis, and Erik Strand; research scientists Patricia Maria Stathatou and Carolina Bastidas; and Professor Neil Gershenfeld, director of the Center for Bits and Atoms; along with Alexis Oliveira Da Silva at the Polytechnic Institute of Paris, Dixia Fan of Westlake University, and Jeffrey Gair Jr. of Scinetics, Inc.

    Leveraging turbulence

    Some regions have already erected artificial reefs to protect their coastlines from encroaching storms. These structures are typically sunken ships, retired oil and gas platforms, and even assembled configurations of concrete, metal, tires, and stones. However, there’s variability in the types of artificial reefs that are currently in place, and no standard for engineering such structures. What’s more, the designs that are deployed tend to have a low wave dissipation per unit volume of material used. That is, it takes a huge amount of material to break enough wave energy to adequately protect coastal communities.

    The MIT team instead looked for ways to engineer an artificial reef that would efficiently dissipate wave energy with less material, while also providing a refuge for fish living along any vulnerable coast.

    “Remember, natural coral reefs are only found in tropical waters,” says Triantafyllou, who is director of the MIT Sea Grant. “We cannot have these reefs, for instance, in Massachusetts. But architected reefs don’t depend on temperature, so they can be placed in any water, to protect more coastal areas.”

    MIT researchers test the wave-breaking performance of two artificial reef structures in the MIT Towing Tank.Credit: Courtesy of the researchers

    The new effort is the result of a collaboration between researchers in MIT Sea Grant, who developed the reef structure’s hydrodynamic design, and researchers at the Center for Bits and Atoms (CBA), who worked to make the structure modular and easy to fabricate on location. The team’s architected reef design grew out of two seemingly unrelated problems. CBA researchers were developing ultralight cellular structures for the aerospace industry, while Sea Grant researchers were assessing the performance of blowout preventers in offshore oil structures — cylindrical valves that are used to seal off oil and gas wells and prevent them from leaking.

    The team’s tests showed that the structure’s cylindrical arrangement generated a high amount of drag. In other words, the structure appeared to be especially efficient in dissipating high-force flows of oil and gas. They wondered: Could the same arrangement dissipate another type of flow, in ocean waves?

    The researchers began to play with the general structure in simulations of water flow, tweaking its dimensions and adding certain elements to see whether and how waves changed as they crashed against each simulated design. This iterative process ultimately landed on an optimized geometry: a vertical cylinder flanked by four long slats, each attached to the cylinder in a way that leaves space for water to flow through the resulting structure. They found this setup essentially breaks up any incoming wave energy, causing parts of the wave-induced flow to spiral to the sides rather than crashing ahead.

    “We’re leveraging this turbulence and these powerful jets to ultimately dissipate wave energy,” Ferrandis says.

    Standing up to storms

    Once the researchers identified an optimal wave-dissipating structure, they fabricated a laboratory-scale version of an architected reef made from a series of the cylindrical structures, which they 3D-printed from plastic. Each test cylinder measured about 1 foot wide and 4 feet tall. They assembled a number of cylinders, each spaced about a foot apart, to form a fence-like structure, which they then lowered into a wave tank at MIT. They then generated waves of various heights and measured them before and after passing through the architected reef.

    “We saw the waves reduce substantially, as the reef destroyed their energy,” Triantafyllou says.

    The team has also looked into making the structures more porous, and friendly to fish. They found that, rather than making each structure from a solid slab of plastic, they could use a more affordable and sustainable type of cement.

    “We’ve worked with biologists to test the cement we intend to use, and it’s benign to fish, and ready to go,” he adds.

    They identified an ideal pattern of “voxels,” or microstructures, that cement could be molded into, in order to fabricate the reefs while creating pockets in which fish could live. This voxel geometry resembles individual egg cartons, stacked end to end, and appears to not affect the structure’s overall wave-dissipating power.

    “These voxels still maintain a big drag while allowing fish to move inside,” Ferrandis says.

    The team is currently fabricating cement voxel structures and assembling them into a lab-scale architected reef, which they will test under various wave conditions. They envision that the voxel design could be modular, and scalable to any desired size, and easy to transport and install in various offshore locations. “Now we’re simulating actual sea patterns, and testing how these models will perform when we eventually have to deploy them,” says Anjali Sinha, a graduate student at MIT who recently joined the group.

    Going forward, the team hopes to work with beach towns in Massachusetts to test the structures on a pilot scale.

    “These test structures would not be small,” Triantafyllou emphasizes. “They would be about a mile long, and about 5 meters tall, and would cost something like 6 million dollars per mile. So it’s not cheap. But it could prevent billions of dollars in storm damage. And with climate change, protecting the coasts will become a big issue.”

    This work was funded, in part, by the U.S. Defense Advanced Research Projects Agency. More

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      in Environment

      Devices offers long-distance, low-power underwater communication

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      MIT researchers have demonstrated the first system for ultra-low-power underwater networking and communication, which can transmit signals across kilometer-scale distances.

      This technique, which the researchers began developing several years ago, uses about one-millionth the power that existing underwater communication methods use. By expanding their battery-free system’s communication range, the researchers have made the technology more feasible for applications such as aquaculture, coastal hurricane prediction, and climate change modeling.

      “What started as a very exciting intellectual idea a few years ago — underwater communication with a million times lower power — is now practical and realistic. There are still a few interesting technical challenges to address, but there is a clear path from where we are now to deployment,” says Fadel Adib, associate professor in the Department of Electrical Engineering and Computer Science and director of the Signal Kinetics group in the MIT Media Lab.

      Underwater backscatter enables low-power communication by encoding data in sound waves that it reflects, or scatters, back toward a receiver. These innovations enable reflected signals to be more precisely directed at their source.

      Due to this “retrodirectivity,” less signal scatters in the wrong directions, allowing for more efficient and longer-range communication.

      When tested in a river and an ocean, the retrodirective device exhibited a communication range that was more than 15 times farther than previous devices. However, the experiments were limited by the length of the docks available to the researchers.

      To better understand the limits of underwater backscatter, the team also developed an analytical model to predict the technology’s maximum range. The model, which they validated using experimental data, showed that their retrodirective system could communicate across kilometer-scale distances.

      The researchers shared these findings in two papers which will be presented at this year’s ACM SIGCOMM and MobiCom conferences. Adib, senior author on both papers, is joined on the SIGCOMM paper by co-lead authors Aline Eid, a former postdoc who is now an assistant professor at the University of Michigan, and Jack Rademacher, a research assistant; as well as research assistants Waleed Akbar and Purui Wang, and postdoc Ahmed Allam. The MobiCom paper is also written by co-lead authors Akbar and Allam.

      Communicating with sound waves

      Underwater backscatter communication devices utilize an array of nodes made from “piezoelectric” materials to receive and reflect sound waves. These materials produce an electric signal when mechanical force is applied to them.

      When sound waves strike the nodes, they vibrate and convert the mechanical energy to an electric charge. The nodes use that charge to scatter some of the acoustic energy back to the source, transmitting data that a receiver decodes based on the sequence of reflections.

      But because the backscattered signal travels in all directions, only a small fraction reaches the source, reducing the signal strength and limiting the communication range.

      To overcome this challenge, the researchers leveraged a 70-year-old radio device called a Van Atta array, in which symmetric pairs of antennas are connected in such a way that the array reflects energy back in the direction it came from.

      But connecting piezoelectric nodes to make a Van Atta array reduces their efficiency. The researchers avoided this problem by placing a transformer between pairs of connected nodes. The transformer, which transfers electric energy from one circuit to another, allows the nodes to reflect the maximum amount of energy back to the source.

      “Both nodes are receiving and both nodes are reflecting, so it is a very interesting system. As you increase the number of elements in that system, you build an array that allows you to achieve much longer communication ranges,” Eid explains.

      In addition, they used a technique called cross-polarity switching to encode binary data in the reflected signal. Each node has a positive and a negative terminal (like a car battery), so when the positive terminals of two nodes are connected and the negative terminals of two nodes are connected, that reflected signal is a “bit one.”

      But if the researchers switch the polarity, and the negative and positive terminals are connected to each other instead, then the reflection is a “bit zero.”

      “Just connecting the piezoelectric nodes together is not enough. By alternating the polarities between the two nodes, we are able to transmit data back to the remote receiver,” Rademacher explains.

      When building the Van Atta array, the researchers found that if the connected nodes were too close, they would block each other’s signals. They devised a new design with staggered nodes that enables signals to reach the array from any direction. With this scalable design, the more nodes an array has, the greater its communication range.

      They tested the array in more than 1,500 experimental trials in the Charles River in Cambridge, Massachusetts, and in the Atlantic Ocean, off the coast of Falmouth, Massachusetts, in collaboration with the Woods Hole Oceanographic Institution. The device achieved communication ranges of 300 meters, more than 15 times longer than they previously demonstrated.

      However, they had to cut the experiments short because they ran out of space on the dock.

      Modeling the maximum

      That inspired the researchers to build an analytical model to determine the theoretical and practical communication limits of this new underwater backscatter technology.

      Building off their group’s work on RFIDs, the team carefully crafted a model that captured the impact of system parameters, like the size of the piezoelectric nodes and the input power of the signal, on the underwater operation range of the device.

      “It is not a traditional communication technology, so you need to understand how you can quantify the reflection. What are the roles of the different components in that process?” Akbar says.

      For instance, the researchers needed to derive a function that captures the amount of signal reflected out of an underwater piezoelectric node with a specific size, which was among the biggest challenges of developing the model, he adds.

      They used these insights to create a plug-and-play model into a which a user could enter information like input power and piezoelectric node dimensions and receive an output that shows the expected range of the system.

      They evaluated the model on data from their experimental trials and found that it could accurately predict the range of retrodirected acoustic signals with an average error of less than one decibel.

      Using this model, they showed that an underwater backscatter array can potentially achieve kilometer-long communication ranges.

      “We are creating a new ocean technology and propelling it into the realm of the things we have been doing for 6G cellular networks. For us, it is very rewarding because we are starting to see this now very close to reality,” Adib says.

      The researchers plan to continue studying underwater backscatter Van Atta arrays, perhaps using boats so they could evaluate longer communication ranges. Along the way, they intend to release tools and datasets so other researchers can build on their work. At the same time, they are beginning to move toward commercialization of this technology.

      “Limited range has been an open problem in underwater backscatter networks, preventing them from being used in real-world applications. This paper takes a significant step forward in the future of underwater communication, by enabling them to operate on minimum energy while achieving long range,” says Omid Abari, assistant professor of computer science at the University of California at Los Angeles, who was not involved with this work. “The paper is the first to bring Van Atta Reflector array technique into underwater backscatter settings and demonstrate its benefits in improving the communication range by orders of magnitude. This can take battery-free underwater communication one step closer to reality, enabling applications such as underwater climate change monitoring and coastal monitoring.”

      This research was funded, in part, by the Office of Naval Research, the Sloan Research Fellowship, the National Science Foundation, the MIT Media Lab, and the Doherty Chair in Ocean Utilization. More

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      in Environment

      Study: The ocean’s color is changing as a consequence of climate change

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      The ocean’s color has changed significantly over the last 20 years, and the global trend is likely a consequence of human-induced climate change, report scientists at MIT, the National Oceanography Center in the U.K., and elsewhere.  

      In a study appearing today in Nature, the team writes that they have detected changes in ocean color over the past two decades that cannot be explained by natural, year-to-year variability alone. These color shifts, though subtle to the human eye, have occurred over 56 percent of the world’s oceans — an expanse that is larger than the total land area on Earth.

      In particular, the researchers found that tropical ocean regions near the equator have become steadily greener over time. The shift in ocean color indicates that ecosystems within the surface ocean must also be changing, as the color of the ocean is a literal reflection of the organisms and materials in its waters.

      At this point, the researchers cannot say how exactly marine ecosystems are changing to reflect the shifting color. But they are pretty sure of one thing: Human-induced climate change is likely the driver.

      “I’ve been running simulations that have been telling me for years that these changes in ocean color are going to happen,” says study co-author Stephanie Dutkiewicz, senior research scientist in MIT’s Department of Earth, Atmospheric and Planetary Sciences and the Center for Global Change Science. “To actually see it happening for real is not surprising, but frightening. And these changes are consistent with man-induced changes to our climate.”

      “This gives additional evidence of how human activities are affecting life on Earth over a huge spatial extent,” adds lead author B. B. Cael PhD ’19 of the National Oceanography Center in Southampton, U.K. “It’s another way that humans are affecting the biosphere.”

      The study’s co-authors also include Stephanie Henson of the National Oceanography Center, Kelsey Bisson at Oregon State University, and Emmanuel Boss of the University of Maine.

      Above the noise

      The ocean’s color is a visual product of whatever lies within its upper layers. Generally, waters that are deep blue reflect very little life, whereas greener waters indicate the presence of ecosystems, and mainly phytoplankton — plant-like microbes that are abundant in upper ocean and that contain the green pigment chlorophyll. The pigment helps plankton harvest sunlight, which they use to capture carbon dioxide from the atmosphere and convert it into sugars.

      Phytoplankton are the foundation of the marine food web that sustains progressively more complex organisms, on up to krill, fish, and seabirds and marine mammals. Phytoplankton are also a powerful muscle in the ocean’s ability to capture and store carbon dioxide. Scientists are therefore keen to monitor phytoplankton across the surface oceans and to see how these essential communities might respond to climate change. To do so, scientists have tracked changes in chlorophyll, based on the ratio of how much blue versus green light is reflected from the ocean surface, which can be monitored from space

      But around a decade ago, Henson, who is a co-author of the current study, published a paper with others, which showed that, if scientists were tracking chlorophyll alone, it would take at least 30 years of continuous monitoring to detect any trend that was driven specifically by climate change. The reason, the team argued, was that the large, natural variations in chlorophyll from year to year would overwhelm any anthropogenic influence on chlorophyll concentrations. It would therefore take several decades to pick out a meaningful, climate-change-driven signal amid the normal noise.

      In 2019, Dutkiewicz and her colleagues published a separate paper, showing through a new model that the natural variation in other ocean colors is much smaller compared to that of chlorophyll. Therefore, any signal of climate-change-driven changes should be easier to detect over the smaller, normal variations of other ocean colors. They predicted that such changes should be apparent within 20, rather than 30 years of monitoring.

      “So I thought, doesn’t it make sense to look for a trend in all these other colors, rather than in chlorophyll alone?” Cael says. “It’s worth looking at the whole spectrum, rather than just trying to estimate one number from bits of the spectrum.”

       The power of seven

      In the current study, Cael and the team analyzed measurements of ocean color taken by the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Aqua satellite, which has been monitoring ocean color for 21 years. MODIS takes measurements in seven visible wavelengths, including the two colors researchers traditionally use to estimate chlorophyll.

      The differences in color that the satellite picks up are too subtle for human eyes to differentiate. Much of the ocean appears blue to our eye, whereas the true color may contain a mix of subtler wavelengths, from blue to green and even red.

      Cael carried out a statistical analysis using all seven ocean colors measured by the satellite from 2002 to 2022 together. He first looked at how much the seven colors changed from region to region during a given year, which gave him an idea of their natural variations. He then zoomed out to see how these annual variations in ocean color changed over a longer stretch of two decades. This analysis turned up a clear trend, above the normal year-to-year variability.

      To see whether this trend is related to climate change, he then looked to Dutkiewicz’s model from 2019. This model simulated the Earth’s oceans under two scenarios: one with the addition of greenhouse gases, and the other without it. The greenhouse-gas model predicted that a significant trend should show up within 20 years and that this trend should cause changes to ocean color in about 50 percent of the world’s surface oceans — almost exactly what Cael found in his analysis of real-world satellite data.

      “This suggests that the trends we observe are not a random variation in the Earth system,” Cael says. “This is consistent with anthropogenic climate change.”

      The team’s results show that monitoring ocean colors beyond chlorophyll could give scientists a clearer, faster way to detect climate-change-driven changes to marine ecosystems.

      “The color of the oceans has changed,” Dutkiewicz says. “And we can’t say how. But we can say that changes in color reflect changes in plankton communities, that will impact everything that feeds on plankton. It will also change how much the ocean will take up carbon, because different types of plankton have different abilities to do that. So, we hope people take this seriously. It’s not only models that are predicting these changes will happen. We can now see it happening, and the ocean is changing.”

      This research was supported, in part, by NASA. More

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      in Energy

      How to pull carbon dioxide out of seawater

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      As carbon dioxide continues to build up in the Earth’s atmosphere, research teams around the world have spent years seeking ways to remove the gas efficiently from the air. Meanwhile, the world’s number one “sink” for carbon dioxide from the atmosphere is the ocean, which soaks up some 30 to 40 percent of all of the gas produced by human activities.

      Recently, the possibility of removing carbon dioxide directly from ocean water has emerged as another promising possibility for mitigating CO2 emissions, one that could potentially someday even lead to overall net negative emissions. But, like air capture systems, the idea has not yet led to any widespread use, though there are a few companies attempting to enter this area.

      Now, a team of researchers at MIT says they may have found the key to a truly efficient and inexpensive removal mechanism. The findings were reported this week in the journal Energy and Environmental Science, in a paper by MIT professors T. Alan Hatton and Kripa Varanasi, postdoc Seoni Kim, and graduate students Michael Nitzsche, Simon Rufer, and Jack Lake.

      The existing methods for removing carbon dioxide from seawater apply a voltage across a stack of membranes to acidify a feed stream by water splitting. This converts bicarbonates in the water to molecules of CO2, which can then be removed under vacuum. Hatton, who is the Ralph Landau Professor of Chemical Engineering, notes that the membranes are expensive, and chemicals are required to drive the overall electrode reactions at either end of the stack, adding further to the expense and complexity of the processes. “We wanted to avoid the need for introducing chemicals to the anode and cathode half cells and to avoid the use of membranes if at all possible” he says.

      The team came up with a reversible process consisting of membrane-free electrochemical cells. Reactive electrodes are used to release protons to the seawater fed to the cells, driving the release of the dissolved carbon dioxide from the water. The process is cyclic: It first acidifies the water to convert dissolved inorganic bicarbonates to molecular carbon dioxide, which is collected as a gas under vacuum. Then, the water is fed to a second set of cells with a reversed voltage, to recover the protons and turn the acidic water back to alkaline before releasing it back to the sea. Periodically, the roles of the two cells are reversed once one set of electrodes is depleted of protons (during acidification) and the other has been regenerated during alkalization.

      This removal of carbon dioxide and reinjection of alkaline water could slowly start to reverse, at least locally, the acidification of the oceans that has been caused by carbon dioxide buildup, which in turn has threatened coral reefs and shellfish, says Varanasi, a professor of mechanical engineering. The reinjection of alkaline water could be done through dispersed outlets or far offshore to avoid a local spike of alkalinity that could disrupt ecosystems, they say.

      “We’re not going to be able to treat the entire planet’s emissions,” Varanasi says. But the reinjection might be done in some cases in places such as fish farms, which tend to acidify the water, so this could be a way of helping to counter that effect.

      Once the carbon dioxide is removed from the water, it still needs to be disposed of, as with other carbon removal processes. For example, it can be buried in deep geologic formations under the sea floor, or it can be chemically converted into a compound like ethanol, which can be used as a transportation fuel, or into other specialty chemicals. “You can certainly consider using the captured CO2 as a feedstock for chemicals or materials production, but you’re not going to be able to use all of it as a feedstock,” says Hatton. “You’ll run out of markets for all the products you produce, so no matter what, a significant amount of the captured CO2 will need to be buried underground.”

      Initially at least, the idea would be to couple such systems with existing or planned infrastructure that already processes seawater, such as desalination plants. “This system is scalable so that we could integrate it potentially into existing processes that are already processing ocean water or in contact with ocean water,” Varanasi says. There, the carbon dioxide removal could be a simple add-on to existing processes, which already return vast amounts of water to the sea, and it would not require consumables like chemical additives or membranes.

      “With desalination plants, you’re already pumping all the water, so why not co-locate there?” Varanasi says. “A bunch of capital costs associated with the way you move the water, and the permitting, all that could already be taken care of.”

      The system could also be implemented by ships that would process water as they travel, in order to help mitigate the significant contribution of ship traffic to overall emissions. There are already international mandates to lower shipping’s emissions, and “this could help shipping companies offset some of their emissions, and turn ships into ocean scrubbers,” Varanasi says.

      The system could also be implemented at locations such as offshore drilling platforms, or at aquaculture farms. Eventually, it could lead to a deployment of free-standing carbon removal plants distributed globally.

      The process could be more efficient than air-capture systems, Hatton says, because the concentration of carbon dioxide in seawater is more than 100 times greater than it is in air. In direct air-capture systems it is first necessary to capture and concentrate the gas before recovering it. “The oceans are large carbon sinks, however, so the capture step has already kind of been done for you,” he says. “There’s no capture step, only release.” That means the volumes of material that need to be handled are much smaller, potentially simplifying the whole process and reducing the footprint requirements.

      The research is continuing, with one goal being to find an alternative to the present step that requires a vacuum to remove the separated carbon dioxide from the water. Another need is to identify operating strategies to prevent precipitation of minerals that can foul the electrodes in the alkalinization cell, an inherent issue that reduces the overall efficiency in all reported approaches. Hatton notes that significant progress has been made on these issues, but that it is still too early to report on them. The team expects that the system could be ready for a practical demonstration project within about two years.

      “The carbon dioxide problem is the defining problem of our life, of our existence,” Varanasi says. “So clearly, we need all the help we can get.”

      The work was supported by ARPA-E. More

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      in Environment

      Featured video: Investigating our blue ocean planet

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      A five-year doctoral degree program, the MIT – Woods Hole Oceanographic Institution (WHOI) Joint Program in Oceanography/Applied Ocean Science and Engineering combines the strengths of MIT and WHOI to create one of the largest oceanographic facilities in the world. Graduate study in oceanography encompasses virtually all the basic sciences as they apply to the marine environment: physics, chemistry, geochemistry, geology, geophysics, and biology.

      “As a species and as a society we really want to understand the planet that we live on and our place in it,” says Professor Michael Follows, who serves as director of the MIT-WHOI Joint Program.

      “The reason I joined the program was because we cannot afford to wait to be able to address the climate crisis,” explains graduate student Paris Smalls. “The freedom to be able to execute on and have your interests come to life has been incredibly rewarding.”

      “If you have a research problem, you can think of the top five people in that particular niche of a topic and they’re either down the hallway or have some association with WHOI,” adds graduate student Samantha Clevenger. “It’s a really incredible place in terms of connections and just having access to really anything you need.”

      Video by: Melanie Gonick/MIT | 5 min, 12 sec More

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      in Environment

      Ocean microbes get their diet through a surprising mix of sources, study finds

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      One of the smallest and mightiest organisms on the planet is a plant-like bacterium known to marine biologists as Prochlorococcus. The green-tinted microbe measures less than a micron across, and its populations suffuse through the upper layers of the ocean, where a single teaspoon of seawater can hold millions of the tiny organisms.

      Prochlorococcus grows through photosynthesis, using sunlight to convert the atmosphere’s carbon dioxide into organic carbon molecules. The microbe is responsible for 5 percent of the world’s photosynthesizing activity, and scientists have assumed that photosynthesis is the microbe’s go-to strategy for acquiring the carbon it needs to grow.

      But a new MIT study in Nature Microbiology today has found that Prochlorococcus relies on another carbon-feeding strategy, more than previously thought.

      Organisms that use a mix of strategies to provide carbon are known as mixotrophs. Most marine plankton are mixotrophs. And while Prochlorococcus is known to occasionally dabble in mixotrophy, scientists have assumed the microbe primarily lives a phototrophic lifestyle.

      The new MIT study shows that in fact, Prochlorococcus may be more of a mixotroph than it lets on. The microbe may get as much as one-third of its carbon through a second strategy: consuming the dissolved remains of other dead microbes.

      The new estimate may have implications for climate models, as the microbe is a significant force in capturing and “fixing” carbon in the Earth’s atmosphere and ocean.

      “If we wish to predict what will happen to carbon fixation in a different climate, or predict where Prochlorococcus will or will not live in the future, we probably won’t get it right if we’re missing a process that accounts for one-third of the population’s carbon supply,” says Mick Follows, a professor in MIT’s Department of Earth, Atmospheric and Planetary Sciences (EAPS), and its Department of Civil and Environmental Engineering.

      The study’s co-authors include first author and MIT postdoc Zhen Wu, along with collaborators from the University of Haifa, the Leibniz-Institute for Baltic Sea Research, the Leibniz-Institute of Freshwater Ecology and Inland Fisheries, and Potsdam University.

      Persistent plankton

      Since Prochlorococcus was first discovered in the Sargasso Sea in 1986, by MIT Institute Professor Sallie “Penny” Chisholm and others, the microbe has been observed throughout the world’s oceans, inhabiting the upper sunlit layers ranging from the surface down to about 160 meters. Within this range, light levels vary, and the microbe has evolved a number of ways to photosynthesize carbon in even low-lit regions.

      The organism has also evolved ways to consume organic compounds including glucose and certain amino acids, which could help the microbe survive for limited periods of time in dark ocean regions. But surviving on organic compounds alone is a bit like only eating junk food, and there is evidence that Prochlorococcus will die after a week in regions where photosynthesis is not an option.

      And yet, researchers including Daniel Sher of the University of Haifa, who is a co-author of the new study, have observed healthy populations of Prochlorococcus that persist deep in the sunlit zone, where the light intensity should be too low to maintain a population. This suggests that the microbes must be switching to a non-photosynthesizing, mixotrophic lifestyle in order to consume other organic sources of carbon.

      “It seems that at least some Prochlorococcus are using existing organic carbon in a mixotrophic way,” Follows says. “That stimulated the question: How much?”

      What light cannot explain

      In their new paper, Follows, Wu, Sher, and their colleagues looked to quantify the amount of carbon that Prochlorococcus is consuming through processes other than photosynthesis.

      The team looked first to measurements taken by Sher’s team, which previously took ocean samples at various depths in the Mediterranean Sea and measured the concentration of phytoplankton, including Prochlorococcus, along with the associated intensity of light and the concentration of nitrogen — an essential nutrient that is richly available in deeper layers of the ocean and that plankton can assimilate to make proteins.

      Wu and Follows used this data, and similar information from the Pacific Ocean, along with previous work from Chisholm’s lab, which established the rate of photosynthesis that Prochlorococcus could carry out in a given intensity of light.

      “We converted that light intensity profile into a potential growth rate — how fast the population of Prochlorococcus could grow if it was acquiring all it’s carbon by photosynthesis, and light is the limiting factor,” Follows explains.

      The team then compared this calculated rate to growth rates that were previously observed in the Pacific Ocean by several other research teams.

      “This data showed that, below a certain depth, there’s a lot of growth happening that photosynthesis simply cannot explain,” Follows says. “Some other process must be at work to make up the difference in carbon supply.”

      The researchers inferred that, in deeper, darker regions of the ocean, Prochlorococcus populations are able to survive and thrive by resorting to mixotrophy, including consuming organic carbon from detritus. Specifically, the microbe may be carrying out osmotrophy — a process by which an organism passively absorbs organic carbon molecules via osmosis.

      Judging by how fast the microbe is estimated to be growing below the sunlit zone, the team calculates that Prochlorococcus obtains up to one-third of its carbon diet through mixotrophic strategies.

      “It’s kind of like going from a specialist to a generalist lifestyle,” Follows says. “If I only eat pizza, then if I’m 20 miles from a pizza place, I’m in trouble, whereas if I eat burgers as well, I could go to the nearby McDonald’s. People had thought of Prochlorococcus as a specialist, where they do this one thing (photosynthesis) really well. But it turns out they may have more of a generalist lifestyle than we previously thought.”

      Chisholm, who has both literally and figuratively written the book on Prochlorococcus, says the group’s findings “expand the range of conditions under which their populations can not only survive, but also thrive. This study changes the way we think about the role of Prochlorococcus in the microbial food web.”

      This research was supported, in part, by the Israel Science Foundation, the U.S. National Science Foundation, and the Simons Foundation. More

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      in Environment

      Small eddies play a big role in feeding ocean microbes

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      Subtropical gyres are enormous rotating ocean currents that generate sustained circulations in the Earth’s subtropical regions just to the north and south of the equator. These gyres are slow-moving whirlpools that circulate within massive basins around the world, gathering up nutrients, organisms, and sometimes trash, as the currents rotate from coast to coast.

      For years, oceanographers have puzzled over conflicting observations within subtropical gyres. At the surface, these massive currents appear to host healthy populations of phytoplankton — microbes that feed the rest of the ocean food chain and are responsible for sucking up a significant portion of the atmosphere’s carbon dioxide.

      But judging from what scientists know about the dynamics of gyres, they estimated the currents themselves wouldn’t be able to maintain enough nutrients to sustain the phytoplankton they were seeing. How, then, were the microbes able to thrive?

      Now, MIT researchers have found that phytoplankton may receive deliveries of nutrients from outside the gyres, and that the delivery vehicle is in the form of eddies — much smaller currents that swirl at the edges of a gyre. These eddies pull nutrients in from high-nutrient equatorial regions and push them into the center of a gyre, where the nutrients are then taken up by other currents and pumped to the surface to feed phytoplankton.

      Ocean eddies, the team found, appear to be an important source of nutrients in subtropical gyres. Their replenishing effect, which the researchers call a “nutrient relay,” helps maintain populations of phytoplankton, which play a central role in the ocean’s ability to sequester carbon from the atmosphere. While climate models tend to project a decline in the ocean’s ability to sequester carbon over the coming decades, this “nutrient relay” could help sustain carbon storage over the subtropical oceans.

      “There’s a lot of uncertainty about how the carbon cycle of the ocean will evolve as climate continues to change, ” says Mukund Gupta, a postdoc at Caltech who led the study as a graduate student at MIT. “As our paper shows, getting the carbon distribution right is not straightforward, and depends on understanding the role of eddies and other fine-scale motions in the ocean.”

      Gupta and his colleagues report their findings this week in the Proceedings of the National Academy of Sciences. The study’s co-authors are Jonathan Lauderdale, Oliver Jahn, Christopher Hill, Stephanie Dutkiewicz, and Michael Follows at MIT, and Richard Williams at the University of Liverpool.

      A snowy puzzle

      A cross-section of an ocean gyre resembles a stack of nesting bowls that is stratified by density: Warmer, lighter layers lie at the surface, while colder, denser waters make up deeper layers. Phytoplankton live within the ocean’s top sunlit layers, where the microbes require sunlight, warm temperatures, and nutrients to grow.

      When phytoplankton die, they sink through the ocean’s layers as “marine snow.” Some of this snow releases nutrients back into the current, where they are pumped back up to feed new microbes. The rest of the snow sinks out of the gyre, down to the deepest layers of the ocean. The deeper the snow sinks, the more difficult it is for it to be pumped back to the surface. The snow is then trapped, or sequestered, along with any unreleased carbon and nutrients.

      Oceanographers thought that the main source of nutrients in subtropical gyres came from recirculating marine snow. But as a portion of this snow inevitably sinks to the bottom, there must be another source of nutrients to explain the healthy populations of phytoplankton at the surface. Exactly what that source is “has left the oceanography community a little puzzled for some time,” Gupta says.

      Swirls at the edge

      In their new study, the team sought to simulate a subtropical gyre to see what other dynamics may be at work. They focused on the North Pacific gyre, one of the Earth’s five major gyres, which circulates over most of the North Pacific Ocean, and spans more than 20 million square kilometers. 

      The team started with the MITgcm, a general circulation model that simulates the physical circulation patterns in the atmosphere and oceans. To reproduce the North Pacific gyre’s dynamics as realistically as possible, the team used an MITgcm algorithm, previously developed at NASA and MIT, which tunes the model to match actual observations of the ocean, such as ocean currents recorded by satellites, and temperature and salinity measurements taken by ships and drifters.  

      “We use a simulation of the physical ocean that is as realistic as we can get, given the machinery of the model and the available observations,” Lauderdale says.

      Play video

      An animation of the North Pacific Ocean shows phosphate nutrient concentrations at 500 meters below the ocean surface. The swirls represent small eddies transporting phosphate from the nutrient-rich equator (lighter colors), northward toward the nutrient-depleted subtropics (darker colors). This nutrient relay mechanism helps sustain biological activity and carbon sequestration in the subtropical ocean. Credit: Oliver Jahn

      The realistic model captured finer details, at a resolution of less than 20 kilometers per pixel, compared to other models that have a more limited resolution. The team combined the simulation of the ocean’s physical behavior with the Darwin model — a simulation of microbe communities such as phytoplankton, and how they grow and evolve with ocean conditions.

      The team ran the combined simulation of the North Pacific gyre over a decade, and created animations to visualize the pattern of currents and the nutrients they carried, in and around the gyre. What emerged were small eddies that ran along the edges of the enormous gyre and appeared to be rich in nutrients.

      “We were picking up on little eddy motions, basically like weather systems in the ocean,” Lauderdale says. “These eddies were carrying packets of high-nutrient waters, from the equator, north into the center of the gyre and downwards along the sides of the bowls. We wondered if these eddy transfers made an important delivery mechanism.”

      Surprisingly, the nutrients first move deeper, away from the sunlight, before being returned upwards where the phytoplankton live. The team found that ocean eddies could supply up to 50 percent of the nutrients in subtropical gyres.

      “That is very significant,” Gupta says. “The vertical process that recycles nutrients from marine snow is only half the story. The other half is the replenishing effect of these eddies. As subtropical gyres contribute a significant part of the world’s oceans, we think this nutrient relay is of global importance.”

      This research was supported, in part, by the Simons Foundation and NASA. More

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      in Energy

      Ocean scientists measure sediment plume stirred up by deep-sea-mining vehicle

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      What will be the impact to the ocean if humans are to mine the deep sea? It’s a question that’s gaining urgency as interest in marine minerals has grown.

      The ocean’s deep-sea bed is scattered with ancient, potato-sized rocks called “polymetallic nodules” that contain nickel and cobalt — minerals that are in high demand for the manufacturing of batteries, such as for powering electric vehicles and storing renewable energy, and in response to factors such as increasing urbanization. The deep ocean contains vast quantities of mineral-laden nodules, but the impact of mining the ocean floor is both unknown and highly contested.

      Now MIT ocean scientists have shed some light on the topic, with a new study on the cloud of sediment that a collector vehicle would stir up as it picks up nodules from the seafloor.

      The study, appearing today in Science Advances, reports the results of a 2021 research cruise to a region of the Pacific Ocean known as the Clarion Clipperton Zone (CCZ), where polymetallic nodules abound. There, researchers equipped a pre-prototype collector vehicle with instruments to monitor sediment plume disturbances as the vehicle maneuvered across the seafloor, 4,500 meters below the ocean’s surface. Through a sequence of carefully conceived maneuvers. the MIT scientists used the vehicle to monitor its own sediment cloud and measure its properties.

      Their measurements showed that the vehicle created a dense plume of sediment in its wake, which spread under its own weight, in a phenomenon known in fluid dynamics as a “turbidity current.” As it gradually dispersed, the plume remained relatively low, staying within 2 meters of the seafloor, as opposed to immediately lofting higher into the water column as had been postulated.

      “It’s quite a different picture of what these plumes look like, compared to some of the conjecture,” says study co-author Thomas Peacock, professor of mechanical engineering at MIT. “Modeling efforts of deep-sea mining plumes will have to account for these processes that we identified, in order to assess their extent.”

      The study’s co-authors include lead author Carlos Muñoz-Royo, Raphael Ouillon, and Souha El Mousadik of MIT; and Matthew Alford of the Scripps Institution of Oceanography.

      Deep-sea maneuvers

      To collect polymetallic nodules, some mining companies are proposing to deploy tractor-sized vehicles to the bottom of the ocean. The vehicles would vacuum up the nodules along with some sediment along their path. The nodules and sediment would then be separated inside of the vehicle, with the nodules sent up through a riser pipe to a surface vessel, while most of the sediment would be discharged immediately behind the vehicle.

      Peacock and his group have previously studied the dynamics of the sediment plume that associated surface operation vessels may pump back into the ocean. In their current study, they focused on the opposite end of the operation, to measure the sediment cloud created by the collectors themselves.

      In April 2021, the team joined an expedition led by Global Sea Mineral Resources NV (GSR), a Belgian marine engineering contractor that is exploring the CCZ for ways to extract metal-rich nodules. A European-based science team, Mining Impacts 2, also conducted separate studies in parallel. The cruise was the first in over 40 years to test a “pre-prototype” collector vehicle in the CCZ. The machine, called Patania II, stands about 3 meters high, spans 4 meters wide, and is about one-third the size of what a commercial-scale vehicle is expected to be.

      While the contractor tested the vehicle’s nodule-collecting performance, the MIT scientists monitored the sediment cloud created in the vehicle’s wake. They did so using two maneuvers that the vehicle was programmed to take: a “selfie,” and a “drive-by.”

      Both maneuvers began in the same way, with the vehicle setting out in a straight line, all its suction systems turned on. The researchers let the vehicle drive along for 100 meters, collecting any nodules in its path. Then, in the “selfie” maneuver, they directed the vehicle to turn off its suction systems and double back around to drive through the cloud of sediment it had just created. The vehicle’s installed sensors measured the concentration of sediment during this “selfie” maneuver, allowing the scientists to monitor the cloud within minutes of the vehicle stirring it up.

      Play video

      A movie of the Patania II pre-prototype collector vehicle entering, driving through, and leaving the low-lying turbidity current plume as part of a selfie operation. For scale, the instrumentation post attached to the front of the vehicle reaches about 3m above the seabed. The movie is sped up by a factor of 20. Credit: Global Sea Mineral Resources

      For the “drive-by” maneuver, the researchers placed a sensor-laden mooring 50 to 100 meters from the vehicle’s planned tracks. As the vehicle drove along collecting nodules, it created a plume that eventually spread past the mooring after an hour or two. This “drive-by” maneuver enabled the team to monitor the sediment cloud over a longer timescale of several hours, capturing the plume evolution.

      Out of steam

      Over multiple vehicle runs, Peacock and his team were able to measure and track the evolution of the sediment plume created by the deep-sea-mining vehicle.

      “We saw that the vehicle would be driving in clear water, seeing the nodules on the seabed,” Peacock says. “And then suddenly there’s this very sharp sediment cloud coming through when the vehicle enters the plume.”

      From the selfie views, the team observed a behavior that was predicted by some of their previous modeling studies: The vehicle stirred up a heavy amount of sediment that was dense enough that, even after some mixing with the surrounding water, it generated a plume that behaved almost as a separate fluid, spreading under its own weight in what’s known as a turbidity current.

      “The turbidity current spreads under its own weight for some time, tens of minutes, but as it does so, it’s depositing sediment on the seabed and eventually running out of steam,” Peacock says. “After that, the ocean currents get stronger than the natural spreading, and the sediment transitions to being carried by the ocean currents.”

      By the time the sediment drifted past the mooring, the researchers estimate that 92 to 98 percent of the sediment either settled back down or remained within 2 meters of the seafloor as a low-lying cloud. There is, however, no guarantee that the sediment always stays there rather than drifting further up in the water column. Recent and future studies by the research team are looking into this question, with the goal of consolidating understanding for deep-sea mining sediment plumes.

      “Our study clarifies the reality of what the initial sediment disturbance looks like when you have a certain type of nodule mining operation,” Peacock says. “The big takeaway is that there are complex processes like turbidity currents that take place when you do this kind of collection. So, any effort to model a deep-sea-mining operation’s impact will have to capture these processes.”

      “Sediment plumes produced by deep-seabed mining are a major concern with regards to environmental impact, as they will spread over potentially large areas beyond the actual site of mining and affect deep-sea life,” says Henko de Stigter, a marine geologist at the Royal Netherlands Institute for Sea Research, who was not involved in the research. “The current paper provides essential insight in the initial development of these plumes.”

      This research was supported, in part, by the National Science Foundation, ARPA-E, the 11th Hour Project, the Benioff Ocean Initiative, and Global Sea Mineral Resources. The funders had no role in any aspects of the research analysis, the research team states. More

    • 138 Shares129 Views

      in Security

      Engineers use artificial intelligence to capture the complexity of breaking waves

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      Waves break once they swell to a critical height, before cresting and crashing into a spray of droplets and bubbles. These waves can be as large as a surfer’s point break and as small as a gentle ripple rolling to shore. For decades, the dynamics of how and when a wave breaks have been too complex to predict.

      Now, MIT engineers have found a new way to model how waves break. The team used machine learning along with data from wave-tank experiments to tweak equations that have traditionally been used to predict wave behavior. Engineers typically rely on such equations to help them design resilient offshore platforms and structures. But until now, the equations have not been able to capture the complexity of breaking waves.

      The updated model made more accurate predictions of how and when waves break, the researchers found. For instance, the model estimated a wave’s steepness just before breaking, and its energy and frequency after breaking, more accurately than the conventional wave equations.

      Their results, published today in the journal Nature Communications, will help scientists understand how a breaking wave affects the water around it. Knowing precisely how these waves interact can help hone the design of offshore structures. It can also improve predictions for how the ocean interacts with the atmosphere. Having better estimates of how waves break can help scientists predict, for instance, how much carbon dioxide and other atmospheric gases the ocean can absorb.

      “Wave breaking is what puts air into the ocean,” says study author Themis Sapsis, an associate professor of mechanical and ocean engineering and an affiliate of the Institute for Data, Systems, and Society at MIT. “It may sound like a detail, but if you multiply its effect over the area of the entire ocean, wave breaking starts becoming fundamentally important to climate prediction.”

      The study’s co-authors include lead author and MIT postdoc Debbie Eeltink, Hubert Branger and Christopher Luneau of Aix-Marseille University, Amin Chabchoub of Kyoto University, Jerome Kasparian of the University of Geneva, and T.S. van den Bremer of Delft University of Technology.

      Learning tank

      To predict the dynamics of a breaking wave, scientists typically take one of two approaches: They either attempt to precisely simulate the wave at the scale of individual molecules of water and air, or they run experiments to try and characterize waves with actual measurements. The first approach is computationally expensive and difficult to simulate even over a small area; the second requires a huge amount of time to run enough experiments to yield statistically significant results.

      The MIT team instead borrowed pieces from both approaches to develop a more efficient and accurate model using machine learning. The researchers started with a set of equations that is considered the standard description of wave behavior. They aimed to improve the model by “training” the model on data of breaking waves from actual experiments.

      “We had a simple model that doesn’t capture wave breaking, and then we had the truth, meaning experiments that involve wave breaking,” Eeltink explains. “Then we wanted to use machine learning to learn the difference between the two.”

      The researchers obtained wave breaking data by running experiments in a 40-meter-long tank. The tank was fitted at one end with a paddle which the team used to initiate each wave. The team set the paddle to produce a breaking wave in the middle of the tank. Gauges along the length of the tank measured the water’s height as waves propagated down the tank.

      “It takes a lot of time to run these experiments,” Eeltink says. “Between each experiment you have to wait for the water to completely calm down before you launch the next experiment, otherwise they influence each other.”

      Safe harbor

      In all, the team ran about 250 experiments, the data from which they used to train a type of machine-learning algorithm known as a neural network. Specifically, the algorithm is trained to compare the real waves in experiments with the predicted waves in the simple model, and based on any differences between the two, the algorithm tunes the model to fit reality.

      After training the algorithm on their experimental data, the team introduced the model to entirely new data — in this case, measurements from two independent experiments, each run at separate wave tanks with different dimensions. In these tests, they found the updated model made more accurate predictions than the simple, untrained model, for instance making better estimates of a breaking wave’s steepness.

      The new model also captured an essential property of breaking waves known as the “downshift,” in which the frequency of a wave is shifted to a lower value. The speed of a wave depends on its frequency. For ocean waves, lower frequencies move faster than higher frequencies. Therefore, after the downshift, the wave will move faster. The new model predicts the change in frequency, before and after each breaking wave, which could be especially relevant in preparing for coastal storms.

      “When you want to forecast when high waves of a swell would reach a harbor, and you want to leave the harbor before those waves arrive, then if you get the wave frequency wrong, then the speed at which the waves are approaching is wrong,” Eeltink says.

      The team’s updated wave model is in the form of an open-source code that others could potentially use, for instance in climate simulations of the ocean’s potential to absorb carbon dioxide and other atmospheric gases. The code can also be worked into simulated tests of offshore platforms and coastal structures.

      “The number one purpose of this model is to predict what a wave will do,” Sapsis says. “If you don’t model wave breaking right, it would have tremendous implications for how structures behave. With this, you could simulate waves to help design structures better, more efficiently, and without huge safety factors.”

      This research is supported, in part, by the Swiss National Science Foundation, and by the U.S. Office of Naval Research. More