Effects of short-term manure nitrogen input on soil microbial community structure and diversity in a double-cropping paddy field of southern China

Börjesson, G., Menichetti, L., Kirchmann, H. & Kätterer, T. Soil microbial community structure affected by 53 years of nitrogen fertilisation and different organic amendments. Biol. Fertil. Soils48, 245–257 (2012).

Article  Google Scholar 

Cui, J. et al. Carbon and nitrogen recycling from microbial necromass to cope with C: N stoichiometric imbalance by priming. Soil Biol. Biochem.142, 107720 (2020).

CAS  Article  Google Scholar 

Xiao, D. et al. Microbial biomass, metabolic functional diversity, and activity are affected differently by tillage disturbance and maize planting in a typical karst calcareous soil. J. Soil. Sediment.19, 809–821 (2019).

CAS  Article  Google Scholar 

Dangi, S., Gao, S., Duan, Y. H. & Wang, D. Soil microbial community structure affected by biochar and fertilizer sources. Appl. Soil Ecol.150, 103452 (2020).

Article  Google Scholar 

Geisseler, D. & Scow, K. M. Long-term effects of mineral fertilizers on soil microorganisms: a review. Soil Biol. Biochem.75, 54–63 (2014).

CAS  Article  Google Scholar 

Trivedi, P. et al. Soil aggregation and associated microbial communities modify the impact of agricultural management on carbon content. Environ. Microbiol.19, 3070–3086 (2017).

CAS  Article  Google Scholar 

Jia, X., Li, X. D., Zhao, Y. H., Wang, L. & Zhang, C. Y. Soil microbial community structure in the rhizosphere of Robinia pseudoacacia L. seedlings exposed to elevated air temperature and cadmium-contaminated soils for 4 years. Sci. Total Environ.650, 2355–2363 (2019).

ADS  CAS  Article  Google Scholar 

Zhong, W. et al. The effects of mineral fertilizer and organic manure on soil microbial community and diversity. Plant Soil326, 511–522 (2010).

CAS  Article  Google Scholar 

Hartmann, M., Frey, B., Mayer, J., Maeder, P. & Widmer, F. Distinct soil microbial diversity under long-term organic and conventional farming. ISME J.9, 1177–1194 (2015).

Article  Google Scholar 

Francioli, D. et al. Mineral versus organic amendments: microbial community structure, activity and abundance of agriculturally relevant microbes are driven by long-term fertilization strategies. Front. Microbiol.14, 1446 (2016).

Google Scholar 

Wang, Y. et al. Long-term no-tillage and organic input management enhanced the diversity and stability of soil microbial community. Sci. Total Environ.609, 341–347 (2017).

ADS  CAS  Article  Google Scholar 

Treonis, A. M. et al. Effects of organic amendment and tillage on soil microorganisms and microfauna. Appl. Soil Ecol.46, 103–110 (2010).

Article  Google Scholar 

Forge, T. A., Hogue, E. J., Neilsen, G. & Neilsen, D. Organic mulches alter nematode communities, root growth and fluxes of phosphorus in the root zone of apple. Appl. Soil Ecol.39, 15–22 (2008).

Article  Google Scholar 

Ahn, J. et al. Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices. J. Microbiol.54, 724–731 (2016).

CAS  Article  Google Scholar 

Zhu, X. C. et al. Soil microbial community and activity are affected by integrated agricultural practices in China. Eur. J. Soil Sci.69, 924–935 (2018).

Article  Google Scholar 

Yang, X. Y., Ren, W. D., Sun, B. H. & Zhang, S. L. Effects of contrasting soil management regimes on total and labile soil organic carbon fractions in a loess soil in China. Geoderma177–178, 49–56 (2012).

ADS  Article  Google Scholar 

Chen, Z. D., Ti, F. S. & Chen, F. Soil aggregates response to tillage and residue management in a double paddy rice soil of the southern China. Nutr. Cycl. Agroecosyst.109, 103–114 (2017).

Article  Google Scholar 

Wei, X., Zhu, Z., Wei, L., Wu, J. & Ge, T. Biogeochemical cycles of key elements in the paddy-rice rhizosphere: microbial mechanisms and coupling processes. Rhizosphere10, 100145 (2019).

Article  Google Scholar 

Tang, H. M. et al. Effects of different soil tillage systems on soil carbon management index under double-cropping rice field in southern China. Agron. J.111, 440–446 (2019).

CAS  Article  Google Scholar 

Tang, H. M. et al. Organic manure managements increases soil microbial community structure and diversity in double-cropping paddy field of southern China. Agric. Ecosyst. Environ. https://doi.org/10.1101/2020.04.08.031609 (2020).

Article  Google Scholar 

Zhao, J. et al. Pyrosequencing reveals contrasting soil bacterial diversity and community structure of two main winter wheat cropping systems in China. Microb. Ecol.67, 443–453 (2014).

Article  Google Scholar 

Wu, J., Joergensen, R. G., Pommerening, B., Chaussod, R. & Brookes, P. C. Measurement of soil microbial biomass by fumigation–extraction-an automated procedure. Soil Biol. Biochem.20, 1167–1169 (1990).

Article  Google Scholar 

Peiffer, J. A. et al. Diversity and heritability of the maize rhizosphere microbiome under field conditions. PNAS110, 6548–6553 (2013).

ADS  CAS  Article  Google Scholar 

Wang, Z. T., Liu, L., Chen, Q., Wen, X. X. & Liao, Y. C. Conservation tillage increases soil bacterial diversity in the dryland of northern China. Agron. Sustain. Dev.36, 28 (2016).

Article  Google Scholar 

Bazzicalupo, A. L., Bálint, M. & Schmitt, I. Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyper diverse fungal communities. Fungal Ecol.6, 102–109 (2013).

Article  Google Scholar 

Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics26, 2460–2461 (2010).

CAS  Article  Google Scholar 

SAS. SAS Software of the SAS System for Windows (SAS Institute Inc, Cary, 2008).

Google Scholar 

Blanco-Canqui, H., Ferguson, R. B., Shapiro, C. A., Drijber, R. A. & Walters, D. T. Does inorganic nitrogen fertilization improve soil aggregation? Insights from two long-term tillage experiments. J. Environ. Qual.43, 995–1003 (2014).

Article  Google Scholar 

Neumann, D., Heuer, A., Hemkemeyer, M., Martens, R. & Tebbe, C. C. Response of microbial communities to long-term fertilization depends on their microhabitat. FEMS Microbiol. Ecol.86, 71–84 (2013).

CAS  Article  Google Scholar 

Jenkins, S. N. et al. Taxon specific responses of soil bacteria to the addition of low level C inputs. Soil Biol. Biochem.42, 1624–1631 (2010).

CAS  Article  Google Scholar 

Li, H. et al. Soil bacterial communities of different natural forest types in northeast China. Plant Soil383, 203–216 (2014).

CAS  Article  Google Scholar 

Pascault, N. et al. Stimulation of different functional groups of bacteria by various plant residues as a driver of soil priming effect. Ecosystems16, 810–822 (2013).

CAS  Article  Google Scholar 

He, J. Z., Zheng, Y., Chen, C. R., He, Y. Q. & Zhang, L. M. Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches. J. Soil. Sediment.8, 349–358 (2008).

CAS  Article  Google Scholar 

Paungfoo-lonhienne, C. et al. Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere. Sci. Rep.5, 8678 (2015).

CAS  Article  Google Scholar 

Huang, X. M. et al. Changes of soil microbial biomass carbon and community composition through mixing nitrogen-fixing species with Eucalyptus urophylla in subtropical China. Soil Biol. Biochem.73, 42–48 (2014).

CAS  Article  Google Scholar 

Desantis, T. Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microb.72, 5069–5072 (2006).

CAS  Article  Google Scholar 

Iovieno, P., Alfani, A. & Bååth, E. Soil microbial community structure and biomass as affected by Pinus pinea plantation in two mediterranean areas. Appl. Soil Ecol.45, 56–63 (2010).

Article  Google Scholar