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Environmental and microbial controls on microbial necromass recycling, an important precursor for soil carbon stabilization

  • 1.

    Paustian, K. et al. Perspective climate-smart soils. Nature 532, 49–57 (2016).

    CAS  Article  Google Scholar 

  • 2.

    Cotrufo, M. F., Wallenstein, M. D., Boot, C. M., Denef, K. & Paul, E. The microbial efficiency-matrix stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: Do labile plant inputs form stable soil organic matter? Glob. Change Biol. 19, 988–995 (2013).

    Article  Google Scholar 

  • 3.

    Lehmann, J. & Kleber, M. The contentious nature of soil organic matter. Nature 528, 60–68 (2015).

    CAS  Article  Google Scholar 

  • 4.

    Miltner, A., Bombach, P., Schmidt-Brucken, B. & Kastner, M. SOM genesis: Microbial biomass as a significant source. Biogeochemistry 111, 41–55 (2012).

    CAS  Article  Google Scholar 

  • 5.

    Solomon, D. et al. Micro- and nano-environments of carbon sequestration: multi-element STXM–NEXAFS spectromicroscopy assessment of microbial carbon and mineral associations. Chem. Geol. 329, 53–73 (2012).

    CAS  Article  Google Scholar 

  • 6.

    Kallenbach, C. M., Frey, S. D. & Grandy, A. S. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls. Nat. Commun. 7, 13630 (2016).

    CAS  Article  Google Scholar 

  • 7.

    Liang, C. & Balser, T. C. Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy. Nat. Rev. Microbiol. 9, 75–75 (2011).

    CAS  Article  Google Scholar 

  • 8.

    Liang, C., Amelung, W., Lehmann, J. & Kästner, M. Quantitative assessment of microbial necromass contribution to soil organic matter. Glob. Change Biol. 25, 3578–3590 (2019).

    Article  Google Scholar 

  • 9.

    Bradford, M. A., Keiser, A. D., Davies, C. A., Mersmann, C. A. & Strickland, M. S. Empirical evidence that soil carbon formation from plant inputs is positively related to microbial growth. Biogeochemistry 113, 271–281 (2013).

    CAS  Article  Google Scholar 

  • 10.

    Sinsabaugh, R. L., Moorhead, D. L., Xu, X. & Litvak, M. E. Plant, microbial and ecosystem carbon use efficiencies interact to stabilize microbial growth as a fraction of gross primary production. New Phytol. 214, 1518–1526 (2017).

    CAS  Article  Google Scholar 

  • 11.

    Walker, T. W. N. et al. Microbial temperature sensitivity and biomass change explain soil carbon loss with warming. Nat. Clim. Change 8, 885–889 (2018).

    CAS  Article  Google Scholar 

  • 12.

    Kallenbach, C. M., Wallenstein, M. D., Schipanksi, M. E. & Stuart Grandy, A. Managing agroecosystems for soil microbial carbon use efficiency: ecological unknowns, potential outcomes, and a path forward. Front. Microbiol. 10, 1146 (2019).

    Article  Google Scholar 

  • 13.

    Geisseler, D. & Scow, K. M. Long-term effects of mineral fertilizers on soil microorganisms—a review. Soil Biol. Biochem. 75, 54–63 (2014).

    CAS  Article  Google Scholar 

  • 14.

    Trivedi, P. et al. Microbial regulation of the soil carbon cycle: evidence from gene-enzyme relationships. ISME J. 10, 2593–2604 (2016).

    CAS  Article  Google Scholar 

  • 15.

    Griffiths, R. I. et al. The bacterial biogeography of British soils. Environ. Microbiol. 13, 1642–1654 (2011).

    Article  Google Scholar 

  • 16.

    Fierer, N. et al. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc. Natl Acad. Sci. 109, 21390–21395 (2012).

    CAS  Article  Google Scholar 

  • 17.

    Whitaker, J. et al. Microbial carbon mineralization in tropical lowland and montane forest soils of Peru. Front. Microbiol. 5, 720 (2014).

    Article  Google Scholar 

  • 18.

    Zheng, Q. et al. Growth explains microbial carbon use efficiency across soils differing in land use and geology. Soil Biol. Biochem. 128, 45–55 (2019).

    CAS  Article  Google Scholar 

  • 19.

    Blüthgen, N. et al. A quantitative index of land-use intensity in grasslands: integrating mowing, grazing and fertilization. Basic Appl. Ecol. 13, 207–220 (2012).

    Article  Google Scholar 

  • 20.

    Hagerty, S. B., Allison, S. D. & Schimel, J. P. Evaluating soil microbial carbon use efficiency explicitly as a function of cellular processes: implications for measurements and models. Biogeochemistry 140, 269–283 (2018).

    CAS  Article  Google Scholar 

  • 21.

    Guo, L. B. & Gifford, R. M. Soil carbon stocks and land use change: a meta analysis. Glob. Change Biol. 8, 345–360 (2002).

    Article  Google Scholar 

  • 22.

    Ward, S. E. et al. Legacy effects of grassland management on soil carbon to depth. Glob. Change Biol. 22, 2929–2938 (2016).

    Article  Google Scholar 

  • 23.

    Kramer, M. G., Lajtha, K. & Aufdenkampe, A. K. Depth trends of soil organic matter C:N and 15N natural abundance controlled by association with minerals. Biogeochemistry 136, 237–248 (2017).

    CAS  Article  Google Scholar 

  • 24.

    Naveed, M. et al. Plant exudates may stabilize or weaken soil depending on species, origin and time. Eur. J. Soil Sci. 68, 806–816 (2017).

    CAS  Article  Google Scholar 

  • 25.

    Keiluweit, M., Wanzek, T., Kleber, M., Nico, P. & Fendorf, S. Anaerobic microsites have an unaccounted role in soil carbon stabilization. Nat. Commun. 8, 1771 (2017).

    Article  CAS  Google Scholar 

  • 26.

    Kleber, M., Sollins, P. & Sutton, R. A conceptual model of organo-mineral interactions in soils: self-assembly of organic molecular fragments into zonal structures on mineral surfaces. Biogeochemistry 85, 9–24 (2007).

    Article  Google Scholar 

  • 27.

    Kopittke, P. M. et al. Nitrogen-rich microbial products provide new organo-mineral associations for the stabilization of soil organic matter. Glob. Change Biol. 12, 3218–3221 (2017).

    Google Scholar 

  • 28.

    Sauvadet, M., Lashermes, G., Alavoine, G. & Recous, S. High carbon use efficiency and low priming effect promote soil C stabilization under reduced tillage. Soil Biol. Biochem. 123, 64–73 (2018).

    CAS  Article  Google Scholar 

  • 29.

    Malik, A. A. et al. Land use driven change in soil pH affects microbial carbon cycling processes. Nat. Commun. 9, 3591 (2018).

    Article  CAS  Google Scholar 

  • 30.

    Averill, C., Waring, B. G. & Hawkes, C. V. Historical precipitation predictably alters the shape and magnitude of microbial functional response to soil moisture. Glob. Change Biol. 22, 1957–1964 (2016).

    Article  Google Scholar 

  • 31.

    Hawkes, C. V., Waring, B. G., Rocca, J. D. & Kivlin, S. N. Historical climate controls soil respiration responses to current soil moisture. Proc. Natl Acad. Sci. 114, 6322–6327 (2017).

    CAS  Article  Google Scholar 

  • 32.

    Liu, Z. et al. Precipitation thresholds regulate net carbon exchange at the continental scale. Nat. Commun. 9, 3596 (2018).

    Article  CAS  Google Scholar 

  • 33.

    Roller, B. R. & Schmidt, T. M. The physiology and ecological implications of efficient growth. ISME J. 9, 1481–1487 (2015).

    Article  Google Scholar 

  • 34.

    Shade, A. et al. Fundamentals of microbial community resistance and resilience. Front. Microbiol. 3, 417 (2012).

    Article  Google Scholar 

  • 35.

    Manzoni, S., Jackson, R. B., Trofymow, J. A. & Porporato, A. The global stoichiometry of litter nitrogen mineralization. Science 321, 684–686 (2008).

    CAS  Article  Google Scholar 

  • 36.

    Manzoni, S. et al. Reviews and syntheses: carbon use efficiency from organisms to ecosystems—definitions, theories, and empirical evidence. Biogeosciences 15, 5929–5949 (2018).

    CAS  Article  Google Scholar 

  • 37.

    Martiny, J. B. H., Jones, S. E., Lennon, J. T. & Martiny, A. C. Microbiomes in light of traits: a phylogenetic perspective. Science 350, aac9323–aac9323 (2015).

    Article  CAS  Google Scholar 

  • 38.

    Zelles, L. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biol. Fertil. Soils 29, 111–129 (1999).

    CAS  Article  Google Scholar 

  • 39.

    Apostel, C. et al. Food for microorganisms: position-specific 13C labeling and 13C-PLFA analysis reveals preferences for sorbed or necromass C. Geoderma 312, 86–94 (2018).

    CAS  Article  Google Scholar 

  • 40.

    Cáceres, M. DE & Legendre, P. Associations between species and groups of sites:nindices and statistical inference. Ecology 90, 3566–3574 (2009).

    Article  Google Scholar 

  • 41.

    Bergmann, G. T. et al. The under-recognized dominance of Verrucomicrobia in soil bacterial communities. Soil Biol. Biochem. 43, 1450–1455 (2011).

    CAS  Article  Google Scholar 

  • 42.

    Agricultural Budgeting & Costing Book, 81st edn. (Agro Business Consultants Ltd, 2015) https://abcbooks.co.uk/product/abc-budgeting-costing-book-2/.

  • 43.

    Gossner, M. M. et al. Land-use intensification causes multitrophic homogenization of grassland communities. Nature 540, 266–269 (2016).

    CAS  Article  Google Scholar 

  • 44.

    Allan, E. et al. Land use intensification alters ecosystem multifunctionality via loss of biodiversity and changes to functional composition. Ecol. Lett. 18, 834–843 (2015).

    Article  Google Scholar 

  • 45.

    Throckmorton, H. M., Bird, J. A., Dane, L., Firestone, M. K. & Horwath, W. R. The source of microbial C has little impact on soil organic matter stabilisation in forest ecosystems. Ecol. Lett. 15, 1257–1265 (2012).

    Article  Google Scholar 

  • 46.

    Elias, D. M. O. et al. Functional differences in the microbial processing of recent assimilates under two contrasting perennial bioenergy plantations. Soil Biol. Biochem. 114, 248–262 (2017).

    CAS  Article  Google Scholar 

  • 47.

    Fierer, N., Allen, A. S., Schimel, J. P. & Holden, P. A. Controls on microbial CO2 production: a comparison of surface and subsurface soil horizons. Glob. Chang. Biol. 9, 1322–1332 (2003).

    Article  Google Scholar 

  • 48.

    Emmett, B. A. et al. Countryside Survey. Soils Manual. NERC/Centre for Ecology & Hydrology. 180pp. (CS Technical Report No.3/07 CEH Project Number: C03259) (2008) http://www.countrysidesurvey.org.uk/sites/default/files/CS_UK_2007_TR3%20-%20Soils%20Manual.pdf.

  • 49.

    Kozich, J. J., Westcott, S. L., Baxter, N. T., Highlander, S. K. & Schloss, P. D. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the miseq illumina sequencing platform. Appl. Environ. Microbiol. 79, 5112–5120 (2013).

    CAS  Article  Google Scholar 

  • 50.

    Muyzer, G., Muyzer, G., Smalla, K. & Smalla, K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Int. J. Gen. Mol. Microbiol. 73, 127–141 (1998).

    CAS  Google Scholar 

  • 51.

    Yu, Y., Lee, C., Kim, J. & Hwang, S. Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnol. Bioeng. 89, 670–679 (2005).

    CAS  Article  Google Scholar 

  • 52.

    Ihrmark, K. et al. New primers to amplify the fungal ITS2 region—evaluation by 454-sequencing of artificial and natural communities. FEMS Microbiol. Ecol. 82, 666–677 (2012).

    CAS  Article  Google Scholar 

  • 53.

    Gweon, H. S. et al. PIPITS: An automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform. Methods Ecol. Evol. 6, 973–980 (2015).

    Article  Google Scholar 

  • 54.

    Crossman, Z. M., Abraham, F. & Evershed, R. P. Stable isotope pulse-chasing and compound specific stable carbon isotope analysis of phospholipid fatty acids to assess methane oxidizing bacterial populations in landfill cover soils. Environ. Sci. Technol. 38, 1359–1367 (2004).

    CAS  Article  Google Scholar 


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