Lyons, T. W., Reinhard, C. T. & Planavsky, N. J. The rise of oxygen in Earth’s early ocean and atmosphere. Nature 506, 307–315 (2014).
Canfield, D. E. The early history of atmospheric oxygen: homage to Robert M. Garrels. Ann. Rev. Earth Planet. Sci. 33, 1–36 (2005).
Poulton, S. & Canfield, D. E. Ferruginous conditions: a dominant feature of the ocean through Earth’s history. Elements 7, 107–112 (2011).
Siever, R. The silica cycle in the Precambrian. Geochim. Cosmochim. Acta 56, 3265–3272 (1992).
Large, R. R. et al. Trace element content of sedimentary pyrite as a new proxy for deep-time ocean–atmosphere evolution. Earth Planet. Sci. Lett. 389, 209–220 (2014).
Walter, M. R., Buick, R. & Dunlop, J. S. R. Stromatolites: 3,400–3,500 m year-old from the North Pole area, Western Australia. Nature 284, 443–445 (1980).
Nisbet, E. G. & Fowler, C. M. R. Archean metabolic evolution of microbial mats. Proc. R. Soc. Lond. B 266, 2375–2382 (1991).
Tice, M. M. & Lowe, D. R. Hydrogen-based carbon fixation in the earliest known photosynthetic organisms. Geology 34, 37 (2006).
Van Kranendonk, M. J. Volcanic degassing, hydrothermal circulation and the flourishing of early life on Earth: new evidence from the Warrawoona Group. Earth-Sci. Rev. 74, 197–240 (2006).
Noffke, N., Eriksson, K. A., Hazen, R. M. & Simpson, E. L. A new window into Early Archean life: microbial mats in Earth’s oldest siliciclastic tidal deposits (3.2 Ga Moodies Group, South Africa). Geology 34, 253 (2006).
Noffke, N., Christian, D., Wacey, D. & Hazen, R. M. Microbially induced sedimentary structures recording an ancient ecosystem in the ca. 3.48 billion-year-old Dresser Formation, Pilbara, Western Australia. Astrobiology 13, 1103–1124 (2013).
Dupraz, C. et al. Processes of carbonate precipitation in modern microbial mats. Earth Sci. Rev. 96, 141–162 (2009).
Sakurai, R., Ito, M., Ueno, Y., Kitajima, K. & Maruyama, S. Facies architecture and sequence-stratigraphic features of the Tumbiana Formation in the Pilbara Craton, northwestern Australia: implications for depositional environments of oxygenic stromatolites during the Late Archean. Precambrian Res. 138, 255–273 (2005).
Allwood, A. C., Walter, M. R., Kamber, B. S., Marshall, C. P. & Burch, I. W. Stromatolite reef from the Early Archaean era of Australia. Nature 441, 714–718 (2006).
Allwood, A. C., Rosing, M. T., Flannery, D., Hurowitz, J. & Heirwegh, C. M. Reassessing evidence of life in 3,700-million-year-old rocks of Greenland. Nature 563, 241–244 (2018).
Nutman, A. P., Bennett, V. C., Friend, C. R. L., Van Kranendonk, M. J. & Chivas., A. R. Rapid emergence of life shown by discovery of 3,700-million-year-old microbial structures. Nature 537, 535–538 (2016).
Lepot, K. et al. Extreme 13C-depletions and organic sulfur argue for S-fueled anaerobic methane oxidation in 2.72 Ga old stromatolites. Geochim. Cosmochim. Acta 244, 522–547 (2019).
Baumgartner, R. et al. Nano-porous pyrite and organic matter in 3.5 billion-year-old stromatolites record primordial life. Geology 47, 1039–1043 (2019).
Planavsky, N. J. et al. Evidence for oxygenic photosynthesis half a billion years before the great oxidation event. Nat. Geosci. 7, 283–286 (2014).
Lalonde, S. V. & Konhauser, K. O. Benthic perspective on Earth’s oldest evidence for oxygenic photosynthesis. Proc. Natl Acad. Sci. USA 112, 995–1000 (2015).
Bosak, T., Green, S. E. & Newman, D. K. A likely role for anoxygenic photosynthetic microbes in the formation of ancient stromatolites. Geobiology 5, 119–126 (2007).
Fischer, W. W., Hemp, J. & Johnson, J. E. Evolution of oxygenic photosynthesis. Annu. Rev. Earth Planet. Sci. 44, 647–683 (2016).
Kulp, T. R. et al. Arsenic(III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California. Science 321, 967–970 (2008).
Hoeft, S. E., Kulp, T. R., Han, S. Lanoil, B. & Oremland, R. S. Coupled arsenotrophy in a hot spring photosynthetic biofilm at Mono Lake, California. Appl. Environ. Microbiol. 76, 4633–4639 (2010).
McCann, S. H. et al. Arsenite as an electron donor for anoxygenic photosynthesis: description of three strains of Ectothiorhodospira from Mono Lake, California and Big Soda Lake, Nevada. Life 7, 1, https://doi.org/10.3390/life7010001 (2017).
Oremland, R. S., Saltikov, C. W., Wolfe-Simon, F. & Stolz, J. F. Arsenic in the evolution of earth and extraterrestrial ecosystems. Geomicrobiol. J. 26, 522–536 (2009).
Fru, E. C. et al. The rise of oxygen-driven arsenic cycling at ca. 2.48 Ga. Geology 47, 243–246 (2019).
Sforna, M. C. et al. Evidence for arsenic metabolism and cycling by microorganisms 2.7 billion years ago. Nat. Geosci. 7, 811–815 (2014).
Van Lis, R., Nitschke, W., Duval, S. & Schoepp-Cothenet, B. Arsenics as bioenergetic substrates. Biochim. Biophys. Acta 1827, 176–188 (2013).
Oremland, R. S. & Stolz, J. F. Arsenic, microbes and contaminated aquifers. Trends Microbiol. 13, 45–49 (2005).
Oremland, R. S. et al. A microbial arsenic cycle in a salt-saturated extreme environment. Science 308, 1305–1308 (2005).
Zhu, X. et al. Secondary minerals of weathered orpiment–realgar- bearing tailings in Shimen carbonate-type realgar mine, Changde, Central China. Mineral. Petrol. 109, 1–15 (2013).
Amend, J., Saltikov, C., Lu, G.-S. & Hernandez, J. Microbial arsenic metabolism and reaction energetics. Rev. Mineral. Geochem. 79, 391–433 (2014).
Oremland, R. S., Saltikov, C. W., Stolz, J. F. & Hollibaugh, J. T. Autotrophic microbial arsenotrophy in arsenic-rich soda lakes. FEMS Microbiol. Lett. 364, fnx146, https://doi.org/10.1093/femsle/fnx146 (2017).
Saunders, J. K., Fuchsman, C. A., McKay, C. & Rocap, G. Complete arsenic-based respiratory cycle in the marine microbial communities of pelagic oxygen-deficient zones. Proc. Natl Acad. Sci. USA 116, 9925–9930 (2019).
Hu, S.-Y. et al. Life on the edge: microbial biomineralization in an arsenic- and lead-rich deep-sea hydrothermal vent. Chem. Geol. 533, 119438 (2020).
Ilyaletdinov, A. N. & Abdrashitova, S. A. Autotrophic oxidation of arsenic by a culture of Pseudomonas arsenioxidans. Mikrobiologiya 50, 135–140 (1981).
Oremland, R. S. et al. Anaerobic oxidation of arsenite in Mono Lake water and by a facultative chemoautotroph, strain MLHE-1. Appl. Environ. Microbiol. 68, 4795–4802 (2002).
Newman, D. K., Ahmann, D. & Morel, F. M. M. A brief review of microbial arsenate respiration. Geomicrobiol. J. 15, 255–268 (1998).
Hartley, A. J., Chong, G., Houston, J. & Mather, A. E. 50 million years of climatic stability: evidence from the Atacama Desert, northern Chile. J. Geol. Soc. Lond. 162, 421–424 (2005).
Farias, M. E. et al. Characterization of bacterial diversity associated with microbial mats, gypsum evaporites, and carbonate microbialites in thalassic wetlands: Tebenquiche and Brava, Salar de Atacama, Chile. Extremophiles 18, 311–329 (2014).
Farias, M. E. et al. Prokaryotic diversity and biogeochemical characteristics of benthic microbial ecosystems at La Brava, a hypersaline lake at Salar de Atacama, Chile. PLoS ONE 2, e0186867 (2017).
Sancho-Tomás, M. et al. Distribution, redox and (bio)geochemical implications of arsenic in living microbial mats of Laguna Brava, Salar de Atacama. Chem. Geol. 490, 13–21 (2018).
Deruelle, B. Petrology of the plio-quaternary volcanism of the South-Central and Meridional Andes. J. Volcanol. Geotherm. Res. 14, 77–124 (1982).
Green, O. Field staining techniques for determining calcite, dolomite and phosphate. In A Manual of Practical Laboratory and Field Techniques in Palaeobiology. 55–58 (Springer, Dordrecht, 2001).
Saona, L. A. et al. Analysis of co-regulated abundance of genes associated with arsenic and phosphate metabolism in Andean Microbial Ecosystems. https://doi.org/10.1101/870428 (2019).
Stüeken, E. E. et al. Environmental niches and metabolic diversity in Neoarchean lakes. Geobiology 15, 767–783 (2017).
Flannery, D. T. & Walter, M. R. Archean tufted microbial mats and the Great Oxidation Event: new insights into an ancient problem. Austral. J. Earth Sci. 59, 1–11 (2012).
Coffey, J. M., Flannery, D. T., Walter, M. R. & George, S. C. Sedimentology, stratigraphy and geochemistry of a stromatolite biofacies in the 2.72 Ga Tumbiana Formation, Fortescue Group, Western Australia. Precam. Res. 236, 282–296 (2013).
Awramik, S. M. & Buchheim, H. P. A giant, Late Archean lake system: the Mentheena Member (Tumbiana Formation; Fortescue Group), Western Australia. Precambrian Res. 174, 215–240 (2009).
Van Kranendonk, M. J., Webb, G. E. & Kamber, B. S. Geological and trace element evidence for a marine sedimentary environment of deposition and biogenicity of 3.45 Ga stromatolitic carbonates in the Pilbara Craton, and support for a reducing Archaean ocean. Geobiology 1, 91–108 (2003).
Bolhar, R. & van Kranendonk, M. J. A non-marine depositional setting, for the northern Fortescue Group, Pilbara Craton, inferred from trace element geochemistry of stromatolitic carbonates. Precambrian Res. 155, 229–250 (2007).
Stüeken, E. E., Buick, R. & Schauer, A. Nitrogen isotope evidence for alkaline lakes on late Archean continents. Earth Planet. Sci. Lett. 411, 1–10 (2015).
Hinrichs, K. Microbial fixation of methane carbon at 2.7 Ga; was an anaerobic mechanism possible? Geochem. Geophys. 3, 1–10 (2002).
Lepot, K., Benzerara, K., Brown, G. E. Jr & Philippot, P. (2008) Microbially influenced formation of 2,724-million-year-old stromatolites. Nat. Geosci. 1, 118–121 (2008).
Lepot, K. et al. Organic matter heterogeneities in 2.72 Ga stromatolites: Alteration versus preservation by sulfur incorporation. Geochim. Cosmochim. Acta 73, 6579–6599 (2009).
Stüeken, E. E., Catling, D. C. & Buick, R. Archean sulphur cycling by life on land. Nat. Geosci. 5, 722–725 (2012).
Marin-Carbonne, J. et al. Sulfur isotope’s signal of nanopyrites enclosed in 2.7 Ga stromatolitic organic remains reveal microbial sulfate reduction. Geobiolology 16, 121–138 (2017).
Buick, R. The antiquity of oxygenic photosynthesis: evidence from stromatolites in sulphate-deficient Archaean lakes. Science 255, 74–77 (1992).
Pavlov, A. A., Brown, L. L. & Kasting, J. F. UV shielding of NH3 and O2 by organic hazes in the Archean atmosphere. J. Geophys. Res. 106, 267–288 (2001).
Claire, M. W. et al. The evolution of solar flux from 0.1 nm to 160 μm: quantitative estimates for planetary studies. Astrophys. J. 757, 95. (12pp). (2012).
Cockell, C. S. & Raven, J. A. Ozone and life on the Archean Earth. Philos. Trans. R. Soc. A 365, 1889–1901 (2007).
Catling, D. C. & Zahnle, K. J. The Archean atmosphere. Sci. Adv. 6, eaax1420 (2020).
Risacher, F., Alonso, H. & Salazar, C. The origin of brines and salts in Chilean salars: a hydrochemical review. Earth-Sci. Rev. 63, 249–293 (2003).
Arrigada, C., Roperch, P., Mpodozis, C. & Fernandez, R. Paleomagnetism and tectonics of the southern Atacama Desert (25–28° S), northern Chile. Tectonics 25, TC4001 (2006).
Fernandez, A. B. et al. Microbial diversity in sediment ecosystems (evaporites, domes, microbial mats, and crusts) of hypersaline Laguna Tebenquiche, Salar de Atacama, Chile. Front. Microbiol. 7, 1284 (2016).
Corenthal, L. G., Boutt, D. F., Hynek, S. A. & Munk, L. A. Regional groundwater flow and accumulation of a massive evaporite deposit at the margin of the Chilean Altiplano. J. Geophys. Res. 43, 8017–8025 (2016).
Tapia, J. et al. Geology and geochemistry of the Atacama Desert. Ant. Leeuw. 111, 1273–1291 (2018).
Rasuk, M. C., P. T. Visscher, M. Contreras, M. E. Farias. Mats and microbialites from Laguna La Brava. In Extremophile microbial ecosystems in Central Andes Extreme Environments: Biofilms Microbial, Mats, Microbialites and Endoevaporites. (ed. Farias, M. E.) (Springer Verlag, 2020) https://doi.org/10.1007/978-3-030-36192-1.
Millero, F. J. The thermodynamics and kinetics of the hydrogen sulfide in natural waters. Mar. Chem. 18, 121–147 (1986).
Kondratieva, E. N., Zhukov, V. G., Ivanovsky, R. N., Petushkova, Y. P. & Monosov, E. Z. The capacity of the phototrophic sulfur bacterium Thiocapsa roseopersicina for chemosynthesis. Arch. Microbiol. 108, 287–292 (1976).
Megonigal, J. P., Hines, M. E. & Visscher, P. T. Anaerobic metabolism and production of trace gases. In Treatise on Geochemistry, Vol. 8. (eds Holland, H.D. & Turekian, K. K.) 317–424 (Elsevier, The Netherlands, 2003).
Gallagher, K. L., Kading, T. J., Braissant, O., Dupraz, C. & Visscher, P. T. Inside the alkalinity engine: the role of electron donors in the organomineralization potential of sulfate reducing bacteria. Geobiology 10, 518–530 (2012).
Stumm, W. & Morgan, J. J. Chemical equilibria and rates in natural waters. 3rd edn. 1040 (John Wiley, New York, 1995).
Franz, C. M., Petryshyn, V. A. & Corsetti, F. A. Grain trapping by filamentous cyanobacterial and algal mats: implications for stromatolite microfabrics through time. Geobiology 13, 409–423 (2015).
McCann, S. H. et al. Arsenite as an electron donor for anoxygenic photosynthesis: description of three strains of Ectothiorhodospira from Mono Lake, California and Big Soda Lake, Nevada. Life 7, 1, https://doi.org/10.3390/life7010001 (2016).
Hoeft, S. E. et al. Alkalilimnicola ehrlichii sp. nov., a novel, arsenite- oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor. Int. J. Syst. Evol. Microbiol. 57, 504–512 (2007).
Zerkle, A. L. & Mikhail, S. The geobiological nitrogen cycle: from microbes to the mantle. Geobiology 15, 343–352 (2017).
Wong, H. L. et al. Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes. ISME J. https://doi.org/10.1038/s41396-018-0208-8 (2018).
Poulton, S. W., Fralick, P. W. & Canfield, D. E. The transition to a sulphidic ocean ~1.84 billion years ago. Nature 431, 173–177 (2004).
Kral, T. A., Brink, K. M., Miller, S. L. & McKay, C. P. Hydrogen consumption by methanogens on the early Earth. Org. Life Evol. Biosph. 28, 311–319 (1998).
Vignais, P. M. & Biloud, B. Occurrence, classification and biological function of hydrogenases: an overview. Chem. Rev. 107, 4206–4272 (2007).
Ward, L. M., Rasmussen, B. & Fischer, W. W. Primary productivity was limited by electron donors prior to the advent of oxygenic photosynthesis. J. Geophys. Res. Biogeosci. 124, 211–226 (2019).
Czaja, A. D. et al. Biological Fe oxidation controlled deposition of banded iron formation in the ca. 3770 Ma Isua Supracrustal Belt (West Greenland). Earth Planet. Sci. Lett. 363, 192–203 (2013).
Tice, M. M. & Lowe, D. R. Photosynthetic microbial mats in the 3,416-Myr-old ocean. Nature 431, 549–552 (2004).
Halama, M., Swanner, E. D., Konhauser, K. O. & Kappler, A. Evaluation of siderite and magnetite formation in BIFs by pressure-temperature experiments of Fe(III) minerals and microbial biomass. Earth Planet. Sci. Lett. 450, 243–253 (2016).
Martin, W. F., Bryant, D. A. & Beatty, J. T. A physiological perspective on the origin and evolution of photosynthesis. FEMS Microbiol. Rev. 42, 205–231 (2018).
Duda, J. P. et al. A rare glimpse of paleoarchean life: geobiology of an exceptionally preserved microbial mat facies from the 3.4 Ga Strelley Pool Formation, Western Australia. PLoS ONE 11, e0147629 (2016).
Fru, C. et al. Arsenic stress after Proterozoic glaciations. Sci. Rep. 5, 17789 (2015).
Miralles-Robledillo, J. M., Torregrosa, J., Martinez-Espinosa, R. M. & Pire, C. DMSO reductase family: phylogenetics and applications of extremophiles. Int. J. Mol. Sci. 20, https://doi.org/10.3390/ijms20133349 (2019).
Dupraz, C., Fowler, A., Tobias, C. & Visscher, P. T. Stromatolitic knobs in Storr’s Lake (San Salvador, Bahamas): a model system for formation and alteration of laminae. Geobiology 11, 527–548 (2013).
Pace, A. et al. Formation of stromatolite lamina at the interface of oxygenic-anoxygenic photosynthesis. Geobiology 16, 378–398 (2018).
Mitchell, M. K. & Stapp, W. Field manual for water quality monitoring. 5th edn. (Thomson Shore Printers, Dexter, MI, 1986).
Stal, L. J., van Gemerden, H. & Krumbein, W. E. The simultaneous assay of chlorophyll and bacteriochlorophyll in natural microbial communities. J. Microbiol. Methods 2, 295–306 (1984).
Visscher, P. T., Beukema, J. & van Gemerden, H. In situ characterization of sediments: Measurements of oxygen and sulfide profiles with a novel combined needle electrode. Limnol. Oceanogr. 36, 1476–1480 (1991).
Pagès, A. et al. Diel fluctuations in solute distributions and biogeochemical cycling in a hypersaline microbial mat from Shark Bay, WA. Mar. Chem. 167, 102–112 (2014).
Visscher, P. T. et al. Formation of lithified micritic laminae in modern marine stromatolites (Bahamas): the role of sulfur cycling. Am. Mineral. 83, 1482–1494 (1998).
Epping, H. G., Khalili, A. & Thar, R. Photosynthesis and the dynamics of oxygen consumption in a microbial mat as calculated from transient oxygen microprofiles. Limnol. Oceanogr. 44, 1936–1948 (1999).
Bednar, A. J., Garbino, J. R., Ranville, J. F. & Wildeman, T. R. Preserving the distribution of inorganic arsenic species in groundwater and acid mine drainage samples. Environ. Sci. Technol. 36, 2213–2218 (2002).
Somogyi, A. et al. Optical design and multi-length-scale scanning spectro-microscopy possibilities at the Nanoscopium beamline of synchrotron Soleil. J. Synchrotron. Radiat. 22, 1118–1129 (2015).
Visscher, P. T. et al. Dimethyl sulfide and methanethiol formation in microbial mats: Potential pathways for biogenic signatures. Environ. Microbiol. 5, 296–308 (2003).
Kurth, D. et al. Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis. Sci. Rep. 7, 1024 (2017).
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