Larson, G. et al. Rethinking dog domestication by integrating genetics, archaeology, and biogeography. Proc. Natl. Acad. Sci. U. S. A.109, 8878–8883 (2012).
Shannon, L. M. Genetic structure in village dogs reveals a Central Asian domestication origin. Proc. Natl. Acad. Sci. U. S. A.112, 13639–13644 (2015).
Skoglund, P., Ersmark, E., Palkopoulou, E. & Dalén, L. Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds. Curr. Biol.25, 1–5 (2015).
Thalmann, O. et al. Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science342, 871–874 (2013).
Frantz, L. A. et al. Genomic and archaeological evidence suggests a dual origin of domestic dogs. Science352, 1228–1231 (2016).
Germonpré, M. et al. Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes. J. Archaeol. Sci.36, 473–490 (2009).
Germonpré, M. et al. Palaeolithic dogs and the early domestication of the wolf: a reply to the comments of Crockford and Kuzmin (2012). J. Archaeol. Sci.40, 786–792 (2013).
Gremonpré, M. et al. Palaeolithic dogs and Pleistocene wolves revisited: a reply to Morey (2014). J. Archaeol. Sci.54, 210–216 (2015).
Germonpré, M. et al. Palaeolithic and prehistoric dogs and Pleistocene wolves from Yakutia: identification of isolated skulls. J. Archaeol. Sci.78, 1–19 (2017).
Crockford, S. J. & Kuzmin, Y. V. Comments on Germonpré et al. (2012) Journal of Archaeological Science 36, 2009 “Fossil dogs and wolves from Palaeolithic sites in Belgium, the Ukraine and Russia: osteometry, ancient DNA and stable isotopes”, and Germonpré, Lázki cková-Galetová, and Sablin, Journal of Archaeological Science 39, 2012 “Palaeolithic dog skulls at the Gravettian Predmostí site, the Czech Republic”. J. Archaeol. Sci.39, 2797–2801 (2012).
Morey, D. F. In search of Paleolithic dogs: a quest with mixed results. J. Archaeol. Sci.52, 300–307 (2014).
Botigué, L. R. et al. Ancient European dog genomes reveal continuity since the Early Neolithic. Nat. Commun.8, 16082 (2017).
Camarós, E., Münzel, S. C., Cueto, M., Rivals, F. & Conard, N. J. The evolution of Paleolithic hominin–carnivore interaction written in teeth: stories from the Swabian Jura (Germany). J. Archaeol. Sci.6, 798–809 (2016).
Ovodov, N. D. et al. A 33,000-year-old incipient dog from the Altai Mountains of Siberia: evidence of the earliest domestication disrupted by the Last Glacial Maximum. PLoS ONE6, e22821 (2011).
Sablin, M. & Khlopachev, G. The earliest Ice Age dogs: evidence from Eliseevichi. Curr. Anthropol.43, 795–799 (2002).
Boudadi-Maligne, M. & Escarguel, G. A biometric re-evaluation of recent claims for Early Upper Palaeolithic wolf domestication in Eurasia. J. Archaeol. Sci.45, 80–89 (2014).
Drake, A. G., Coquerelle, M. & Colombeau, G. 3D morphometric analysis of fossil canid skulls contradicts the suggested domestication of dogs during the late Paleolithic. Sci. Rep.5, 8299 (2015).
Morey, D. F. & Jeger, R. Paleolithic dogs: why sustained domestication then?. J. Archaeol. Sci.3, 420–428 (2015).
Napierala, H. & Uerpmann, H. P. A ‘new’ palaeolithic dog from central Europe. Intl. J. Osteoarchaeol.22, 127–137 (2012).
Perri, A. R. A wolf in dog’s clothing: initial dog domestication and Pleistocene wolf variation. J. Archaeol. Sci.68, 1–4 (2016).
Janssens, L. et al. A new look at an old dog: Bonn-Oberkassel reconsidered. J. Archaeol. Sci.92, 126–138 (2018).
Pionnier-Capitan, M. et al. New evidence for Upper Palaeolithic small domestic dogs in South-Western Europe. J. Archaeol. Sci.38, 2123–2140 (2011).
Boudadi-Maligne, M., Mallye, J. B., Langlais, M. & Barshay-Szdmit, C. Des restes de chiens magdaléniens à l’abri du Morin (Gironde, France) Implications socio-économiques d’une innovation zootechnique. Paleo23, 39–54 (2012).
Thalmann, O. & Perri, A. R. Paleogenomics 273–306 (Springer, Cham, 2018).
Mariotti Lippi, M., Foggi, B., Aranguren, B., Ronchitelli, A. & Revedin, A. Multistep food plant processing at Grotta Paglicci (Southern Italy) around 32,600 cal B.P.. Proc. Natl. Acad. Sci. U. S. A.112, 12075–12080 (2015).
Mezzena, F. & Palma di Cesnola, A. Industria acheulena “in situ” nei depositi esterni della Grotta Paglicci (Rignano Garganico – Foggia). Riv. Sci. Preist.26, 3–30 (1971).
Crezzini, J. et al. A spotted hyaena den in the Middle Palaeolithic of Grotta Paglicci (Gargano promontory, Apulia, Southern Italy). Archaeol. Anthropol. Sci.8, 227–240 (2016).
Palma di Cesnola, A. L’Aurignacien et le Gravettien ancien de la grotte Paglicci au Mont Gargano. L’Anthropologie110, 355–370 (2006).
PalmadiCesnola, A. Le Paléolithique supérieur en Italie (Jérôme Millon, Grenoble, 2001).
Berto, C., Boscato, P., Boschin, F., Luzi, E. & Ronchitelli, A. Paleoenvironmental and paleoclimatic context during the Upper Paleolithic (late Upper Pleistocene) in the Italian Peninsula. The small mammal record from Grotta Paglicci (Rignano Garganico, Foggia, Southern Italy). Quat. Sci. Rev.168, 30–41 (2017).
Boschin, F. et al. The palaeoecological meaning of macromammal remains from archaeological sites exemplified by the case study of Grotta Paglicci (Upper Palaeolithic, southern Italy). Quat. Res.90, 470–482 (2018).
Borgia, V., Boschin, F. & Ronchitelli, A. Bone and antler working at Grotta Paglicci (Rignano Garganico, Foggia, southern Italy). Quat. Int.403, 23–39 (2016).
Condemi, S. et al. I resti umani rinvenuti a Paglicci (Rignano Garganico – FG): nota preliminare. Annali dell’Uiversità di Ferrara, Museologia Scientifica e Naturalistica10(2), 233–238 (2014).
Arrighi, S., Borgia, V., d’Errico, F. & Ronchitelli, A. I ciottoli decorati di Paglicci: raffigurazioni e utilizzo. Riv. Sci. Preist.58, 39–58 (2008).
Arrighi, S., Borgia, V., d’Errico, F., Ricci, S. & Ronchitelli, A. Manifestazioni d’arte inedite e analisi tecnologica dell’arte mobiliare di Grotta Paglicci (Rignano Garganico – Foggia). Preist. Alpina46, 49–58 (2012).
Arrighi, S. et al. Grotta Paglicci (Rignano Garganico, Foggia): analisi sulle materie coloranti. Preist. Alpina46, 91–92 (2012).
Ronchitelli, A. et al. When technology joins symbolic behaviour: the gravettian burials at Grotta Paglicci (Rignano Garganico – Foggia – southern Italy). Quat. Int.359–360, 423–441 (2015).
Cassoli, P. F., Fiore, I. & Tagliacozzo, A. Butchering and exploitation of large mammals in the Epigravettian levels of Grotta Romanelli (Apulia, Italy). Anthropozoologica25–26, 309–318 (1997).
Sardella, R. et al. Grotta Romanelli (southern Italy, Apulia): legacies and issues in excavating a key site for the Pleistocene of the Mediterranean. Riv. Ital. Paleontol. Strat.124, 247–264 (2018).
Sardella, R. et al. Grotta Romanelli (Lecce, Southern Italy) between past and future: new studies and perspectives for an archaeo-geosite symbol of the Palaeolithic in Europe. Geoheritage11, 1413–1432 (2019).
Calcagnile, L. et al. New radiocarbon dating results from the Upper Paleolithic–Mesolithic levels in Grotta Romanelli (Apulia, southern Italy). Radiocarbon61, 1211–1220 (2019).
Cassoli, P.F., Gala, M. & Tagliacozzo, A. In Grotta Romanelli nel centenario della sua scoperta (1900–2000). Conference Proceedings (eds Fabbri, P.F., Ingravallo, E., Mangia, A.) 91–111 (Congedo Editore, Galatina, 2003).
Tagliacozzo, A. Grotta Romanelli nel centenario della sua scoperta (1900–2000). Conference Proceedings (eds Fabbri, P.F., Ingravallo, E., Mangia, A.) 169–216 (Congedo Editore, Galatina, 2003).
Boschin, F., Bernardini, F., Zanolli, C. & Tuniz, C. MicroCT imaging of red fox talus: a non-invasive approach to evaluate age at death. Archaeometry57, 194–211 (2015).
Boschin, F., Zanolli, C., Bernardini, F., Princivalle, F. & Tuniz, C. A Look from the inside: MicroCT analysis of burned bones. Ethnobiol. Lett.6, 41–49 (2015).
Geiger, M. et al. Unaltered sequence of dental, skeletal, and sexual maturity in domestic dogs compared to the wolf. Zool. Lett.2, 16 (2016).
Payne, S. & Bull, G. Components of variation in measurements of pig bones and teeth, and the use of measurements to distinguish wild from domestic pig remains. Archaeozoologia2, 27–66 (1988).
Zanolli, C. et al. Inner tooth morphology of Homo erectus from Zhoukoudian. New evidence from an old collection housed at Uppsala University, Sweden. J. Hum. Evol.116, 1–13 (2018).
Zanolli, C. et al. Evidence for increased hominid diversity in the Early to Middle Pleistocene of Indonesia. Nat. Ecol. Evol. https://doi.org/10.1038/s41559-019-0860-z (2019).
Maricic, T., Whitten, M. & Pääbo, S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE5, e14004 (2010).
Hefner, R. & Geffen, E. Group size and home range of the Arabian wolf (Canis lupus) in Southern Israel. J. Mammal.80, 611–619 (1999).
Gaubert, P. et al. Reviving the African Wolf Canis lupus lupaster in North and West Africa: a mitochondrial lineage ranging more than 6,000 km wide. PLoS ONE7, e42740 (2012).
Prothero, D. R. et al. Size and shape stasis in late Pleistocene mammals and birds from Rancho La Brea during the Last Glacial-Interglacial cycle. Quat. Sci. Rev.56, 1–10 (2012).
Payne, S. Paleolithic site of Douara Cave and Paleogeography of Palmyra Basin in Syria, part III: animal bones and further analysis of archeological materials 1–108 (University of Tokyo Press, Tokyo, 1983).
Mecozzi, B. & Lucenti, S. B. The Late Pleistocene Canis lupus (Canidae, Mammalia) from Avetrana (Apulia, Italy): reappraisal and new insights on the European glacial wolves, I. J. Geosci.137, 138–150 (2018).
Rustioni, M., Ferretti, M. P., Mazza, P., Pavia, M. & Varola, A. The vertebrate fauna from Cardamone (Apulia, southern Italy): an example of Mediterranean mammoth fauna. Deinsea9, 395–404 (2003).
Sardella, R. et al. The wolf from Grotta Romanelli (Apulia, Italy) and its implications in the evolutionary history of Canis lupus in the Late Pleistocene of Southern Italy. Quat. Int.328–329, 179–195 (2014).
Trut, L. N. The Genetics of the Dog 15–42 (CABI Publishing, New York, 2001).
Hare, B., Wobber, V. & Wrangham, R. The self-domestication hypothesis: evolution of bonobo psychology is due to selection against aggression. Anim. Behav.83, 573–585 (2012).
Lord, K. A., Larson, G., Coppinger, R. P. & Karlsson, E. The history of farm foxes undermines the animal domestication syndrome. Trends Ecol.35, 125–136 (2020).
Marshall-Pescini, S., Cafazzo, S., Virány, Z. & Range, F. Integrating social ecology in explanation of wolf-dog behavioural differences. Curr. Opin. Behav. Sci.16, 80–86 (2017).
Leonard, J. A., Vilà, C., Fox-Dobbs, K., Koch, P. L. & Wayne, R. K. Megafaunal extinctions and the disappearance of a specialized wolf ecomorph. Curr. Biol.17, 1146–1150 (2007).
Hare, B., Brown, M., Williamson, C. & Tommasello, M. The domestication of social cognition in dogs. Science298, 1634–1636 (2002).
Wobber, V. et al. Breed differences in domestic dogs’ (Canis familiaris) comprehension of human communicative signals. Interact. Stud.10, 206–224 (2009).
Riedel, A. I resti animali della grotta delle Ossa (Škocjan). Atti del Museo Civico di Storia Naturale di Trieste30, 125–208 (1977).
Detry, C. & Cardoso, J. L. On some remains of dog (Canis familiaris) from the Mesolithic shell-middens of Muge, Portugal. J. Archaeol. Sci.37, 2762–2774 (2010).
von den Driesch, A. A guide to measurement of animal bones from archaeological sites. Peabody Mus. Bull.1, 1–148 (1976).
Tuniz, C. et al. The ICTP-Elettra X-ray laboratory for cultural heritage and archaeology. Nucl. Instrum. Methods Phys. Res. A711, 106–110 (2013).
Fajardo, R. J., Ryan, T. M. & Kappelman, J. Assessing the accuracy of high resolution X-ray computed tomography of primate trabecular bone by comparisons with histological sections. Am. J. Phys. Anthropol.118, 1–10 (2002).
Coleman, M. N. & Colbert, M. W. CT thresholding protocols for taking measurements on three-dimensional models. Am. J. Phys. Anthropol.133, 723–725 (2007).
Bouxsein, M. et al. Guidelines for assessment of bone microstructure in rodents using micro-computed tomography. J. Bone Miner. Res.25, 1468–1486 (2010).
Shipman, P., Foster, G. & Schoeninger, M. Burnt bones and teeth: an experimental study of color, morphology, crystal structure and shrinkage. J. Archaeol. Sci.11, 307–325 (1984).
Ghezzo, E. & Rook, L. Cuon alpinus (Pallas, 1811) (Mammalia, Carnivora) from Equi (Late Pleistocene, Massa-Carrara, Italy): anatomical analysis and palaeoethological contextualisation. Rend. Fis. Acc. Lincei25, 492–504 (2014).
Gunz, P. & Mitteroecker, P. Semilandmarks: a method for quantifying curves and surfaces. Hystrix24, 103–109 (2013).
Adams, D.C., Collyer, D.L., Kaliontzopoulou, A. & Sherratt, E. Geomorph: software for geometric morphometric analyses. R package version 3.0.5. https://cran.r-project.org/package=geomorph (2017).
Schlager, S. Statistical Shape and Deformation Analysis 217–256 (Academic Press, London, 2017).
Mitteroecker, P. & Bookstein, F. L. Linear discrimination, ordination, and the visualization of selection gradients in modern morphometrics. Evol. Biol.38, 100–114 (2011).
Dray, S. & Dufour, A. B. The ade4 package: implementing the duality diagram for ecologists. J. Stat. Softw.22, 1–20 (2007).
Bookstein, F. L. Morphometric Tools for Landmark Data: Geometry and Biology (Cambridge University Press, Cambridge, 1991).
Dabney, J. et al. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc. Natl. Acad. Sci. U. S. A.110, 15758–15763 (2013).
Meyer, M. & Kircher, M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. https://doi.org/10.1101/pdb.prot5448 (2010).
Peltzer, G. et al. EAGER: efficient ancient genome reconstruction. Genome Biol.17, 60 (2016).
Kim, K. S., Lee, S. E., Jeong, H. W. & Ha, J. H. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Mol. Phylogenet. Evol.10, 210–220 (1998).
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics25, 1754–1760 (2009).
Schubert, M. et al. Improving ancient DNA read mapping against modern reference genomes. BMC Genom.13, 178 (2012).
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics25, 2078–2079 (2009).
Jonsson, H., Ginolhac, A., Schubert, M., Johnson, P. L. & Orlando, L. mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics29, 1682–1684 (2013).
Loog, L. et al. Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Mol Ecol.00, 1–15. https://doi.org/10.1111/mec.15329 (2019).
Kumar, S., Stecher, G. & Tamura, K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol.33, 1870–1874 (2016).
Edgar, C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res.32, 1792–1797 (2004).
Bouckaert, R. et al. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput. Biol.10, e1003537 (2014).
Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. Tracer v1.6. https://tree.bio.ed.ac.uk/software/tracer (2014)
Bronk Ramsey, C. Bayesian analysis of radiocarbon dates. Radiocarbon51, 337–360 (2009).
Reimer, P. J. et al. IntCal13 and Marine13 radiocarbon age calibration curves 0–50,000 years cal BP. Radiocarbon55, 1869–1887 (2013).
Street, M., Napierala, H. & Janssens, L. The late Palaeolithic dog from Bonn-Oberkassel in context. Rheinische Ausgrabungen72, 253–274 (2015).
Bronk Ramsey, C., Higham, T., Bowles, A. & Hedges, R. Improvements to the pretreatment of bones at Oxford. Radiocarbon46(1), 155–163 (2004).
Fedi, M. E., Cartocci, A., Manetti, M., Taccetti, F. & Mandò, P. A. The 14C AMS facility at LABEC, Florence. Nucl. Instrum. Methods Phys. Res. B259, 18–22 (2007).
Boschin, F. Exploitation of carnivores, lagomorphs and rodents at Grotta Paglicci during the Epigravettian: the dawn of a new subsistence strategy?. J. Archaeol. Sci. Rep.26, 101871 (2019).
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