Mittelbach, G. G. et al. Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol. Lett. 10, 315–331 (2007).
Google Scholar
Mannion, P. D., Upchurch, P., Benson, R. B. J. & Goswami, A. The latitudinal biodiversity gradient through deep time. Trends Ecol. Evol. 29, 42–50 (2014).
Google Scholar
Kinlock, N. L. et al. Explaining global variation in the latitudinal diversity gradient: meta‐analysis confirms known patterns and uncovers new ones. Glob. Ecol. Biogeogr. 27, 125–141 (2018).
Google Scholar
Wiens, J. J., Graham, C. H., Moen, D. S., Smith, S. A. & Reeder, T. W. Evolutionary and ecological causes of the latitudinal diversity gradient in hylid frogs: treefrog trees unearth the roots of high tropical diversity. Am. Nat. 168, 579–596 (2006).
Google Scholar
Wiens, J. J., Sukumaran, J., Pyron, R. A. & Brown, R. M. Evolutionary and biogeographic origins of high tropical diversity in old world frogs (Ranidae). Evolution 63, 1217–1231 (2009).
Google Scholar
Jansson, R., Rodríguez-Castañeda, G. & Harding, L. E. What can multiple phylogenies say about the latitudinal diversity gradient? A new look at the tropical conservatism, out of the tropics, and diversification rate hypotheses: phylogenies and the latitudinal diversity gradient. Evolution 67, 1741–1755 (2013).
Google Scholar
Economo, E. P., Narula, N., Friedman, N. R., Weiser, M. D. & Guénard, B. Macroecology and macroevolution of the latitudinal diversity gradient in ants. Nat. Commun. 9, 1778 (2018).
Google Scholar
Stephens, P. R. & Wiens, J. J. Explaining species richness from continents to communities: the time‐for‐speciation effect in Emydid turtles. Am. Nat. 161, 112–128 (2003).
Google Scholar
Wiens, J. J. & Donoghue, M. J. Historical biogeography, ecology and species richness. Trends Ecol. Evol. 19, 639–644 (2004).
Google Scholar
Morley, R. J. Cretaceous and Tertiary climate change and the past distribution of megathermal rainforests. In Tropical Rainforest Responses to Climatic Change 1–31 (Springer Berlin Heidelberg, 2007). https://doi.org/10.1007/978-3-540-48842-2_1.
Jablonski, D., Roy, K. & Valentine, J. W. Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient. Science 314, 102–106 (2006).
Google Scholar
Condamine, F. L., Sperling, F. A. H., Wahlberg, N., Rasplus, J.-Y. & Kergoat, G. J. What causes latitudinal gradients in species diversity? Evolutionary processes and ecological constraints on swallowtail biodiversity: phylogeny and latitudinal diversity gradient. Ecol. Lett. 15, 267–277 (2012).
Google Scholar
Rolland, J., Condamine, F. L., Beeravolu, C. R., Jiguet, F. & Morlon, H. Dispersal is a major driver of the latitudinal diversity gradient of Carnivora: dispersal and the latitudinal gradient of Carnivora. Glob. Ecol. Biogeogr. 24, 1059–1071 (2015).
Google Scholar
Fischer, A. G. Latitudinal variations in organic diversity. Evolution 14, 64 (1960).
Google Scholar
Rolland, J., Condamine, F. L., Jiguet, F. & Morlon, H. Faster speciation and reduced extinction in the tropics contribute to the mammalian latitudinal diversity gradient. PLoS Biol. 12, e1001775 (2014).
Google Scholar
Rosenzweig, M. L. Species diversity in space and time. (Cambridge University Press, 1995). https://doi.org/10.1017/CBO9780511623387.
Allen, A. P., Gillooly, J. F., Savage, V. M. & Brown, J. H. Kinetic effects of temperature on rates of genetic divergence and speciation. Proc. Natl Acad. Sci. 103, 9130–9135 (2006).
Google Scholar
Schemske, D. W. Ecological and evolutionary perspectives on the origins of tropical diversity. In Foundations of tropical forest biology (eds Chazdon, R. & Whitmore, T.) 163–173 (University of Chicago Press, Chicago, IL, 2002).
Janzen, D. H. Why mountain passes are higher in the tropics. Am. Nat. 101, 233–249 (1967).
Google Scholar
Wahlberg, N. et al. Nymphalid butterflies diversify following near demise at the Cretaceous/Tertiary boundary. Proc. R. Soc. B. 276, 4295–4302 (2009).
Google Scholar
Aduse-Poku, K. et al. Systematics and historical biogeography of the old world butterfly subtribe Mycalesina (Lepidoptera: Nymphalidae: Satyrinae). BMC Evol. Biol. 15, 167 (2015).
Google Scholar
Kozak, K. M. et al. Multilocus species trees show the recent adaptive radiation of the mimetic Heliconius butterflies. Syst. Biol. 64, 505–524 (2015).
Google Scholar
Chazot, N. et al. Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation. Glob. Ecol. Biogeogr. 28, 1118–1132 (2019).
Google Scholar
Chazot, N. et al. Priors and posteriors in Bayesian timing of divergence analyses: the age of butterflies revisited. Syst. Biol. 68, 797–813 (2019).
Google Scholar
Wahlberg, N., Wheat, C. W. & Peña, C. Timing and patterns in the taxonomic diversification of Lepidoptera (Butterflies and Moths). PLoS ONE 8, e80875 (2013).
Google Scholar
Heikkilä, M., Kaila, L., Mutanen, M., Peña, C. & Wahlberg, N. Cretaceous origin and repeated tertiary diversification of the redefined butterflies. Proc. R. Soc. B. 279, 1093–1099 (2012).
Google Scholar
Condamine, F. L., Nabholz, B., Clamens, A.-L., Dupuis, J. R. & Sperling, F. A. H. Mitochondrial phylogenomics, the origin of swallowtail butterflies, and the impact of the number of clocks in Bayesian molecular dating: mito-phylogenomics of swallowtail butterflies. Syst. Entomol. 43, 460–480 (2018).
Google Scholar
Espeland, M. et al. A comprehensive and dated phylogenomic analysis of butterflies. Curr. Biol. 28, 770–778 (2018). e5.
Google Scholar
Ree, R. H. & Smith, S. A. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 57, 4–14 (2008).
Google Scholar
Crisp, M. & Cook, L. Do early branching lineages signify ancestral traits? Trends Ecol. Evol. 20, 122–128 (2005).
Google Scholar
Meseguer, A. S. & Condamine, F. L. Ancient tropical extinctions at high latitudes contributed to the latitudinal diversity gradient*. Evolution 74, 1966–1987 (2020).
Google Scholar
Ziegler, A. et al. Tracing the tropics across land and sea: Permian to present. Lethaia 36, 227–254 (2003).
Google Scholar
Meng, J. & McKenna, M. C. Faunal turnovers of Palaeogene mammals from the Mongolian Plateau. Nature 394, 364–367 (1998).
Google Scholar
Archibald, S. B., Bossert, W. H., Greenwood, D. R. & Farrell, B. D. Seasonality, the latitudinal gradient of diversity, and Eocene insects. Paleobiology 36, 374–398 (2010).
Google Scholar
Baker, W. J. & Couvreur, T. L. P. Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography. J. Biogeogr. 40, 274–285 (2013).
Google Scholar
Liu, Z. et al. Global cooling during the Eocene-Oligocene climate transition. Science 323, 1187–1190 (2009).
Google Scholar
Eldrett, J. S., Greenwood, D. R., Harding, I. C. & Huber, M. Increased seasonality through the Eocene to Oligocene transition in northern high latitudes. Nature 459, 969–973 (2009).
Google Scholar
Saupe, E. E. et al. Climatic shifts drove major contractions in avian latitudinal distributions throughout the Cenozoic. Proc. Natl Acad. Sci. USA 116, 12895–12900 (2019).
Google Scholar
Hawkins, B. A. & DeVries, P. J. Tropical niche conservatism and the species richness gradient of North American butterflies. J. Biogeogr. 36, 1698–1711 (2009).
Google Scholar
Mayr, G. Two-phase extinction of “Southern Hemispheric” birds in the Cenozoic of Europe and the origin of the Neotropic avifauna. Palaeobio. Palaeoenv. 91, 325–333 (2011).
Google Scholar
Veizer, J. & Prokoph, A. Temperatures and oxygen isotopic composition of Phanerozoic oceans. Earth-Sci. Rev. 146, 92–104 (2015).
Google Scholar
Zhang, Z. et al. Aridification of the Sahara desert caused by Tethys Sea shrinkage during the Late Miocene. Nature 513, 401–404 (2014).
Google Scholar
Feakins, S. J. et al. Northeast African vegetation change over 12 m.y. Geology 41, 295–298 (2013).
Google Scholar
Jacobs, B. F. Palaeobotanical studies from tropical Africa: relevance to the evolution of forest, woodland and savannah biomes. Philos. Trans. R. Soc. Lond. B 359, 1573–1583 (2004).
Google Scholar
Jaramillo, C. Cenozoic plant diversity in the Neotropics. Science 311, 1893–1896 (2006).
Google Scholar
Stebbins, G. L. Flowering plants: evolution above the species level. (Harvard University Press, 1974). https://doi.org/10.4159/harvard.9780674864856.
Wahlberg, N. & Wheat, C. W. Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of Lepidoptera. Syst. Biol. 57, 231–242 (2008).
Google Scholar
Philippe, H. et al. Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 9, e1000602 (2011).
Google Scholar
Nee, S. Birth-Death models in macroevolution. Annu. Rev. Ecol. Evol. Syst. 37, 1–17 (2006).
Google Scholar
Ricklefs, R. E. Estimating diversification rates from phylogenetic information. Trends Ecol. Evol. 22, 601–610 (2007).
Google Scholar
Crisp, M. D. & Cook, L. G. Explosive radiation or cryptic mass extinction? Interpreting signatures in molecular phylogenies. Evolution 63, 2257–2265 (2009).
Google Scholar
Lambert, A. & Stadler, T. Birth–death models and coalescent point processes: the shape and probability of reconstructed phylogenies. Theor. Popul. Biol. 90, 113–128 (2013).
Google Scholar
Rabosky, D. L. Extinction rates should not be estimated from molecular phylogenies: estimating extinction from molecular phylogenies. Evolution 64, 1816–1824 (2010).
Google Scholar
Quental, T. B. & Marshall, C. R. Diversity dynamics: molecular phylogenies need the fossil record. Trends Ecol. Evol. 25, 434–441 (2010).
Google Scholar
Burin, G., Alencar, L. R. V., Chang, J., Alfaro, M. E. & Quental, T. B. How well can we estimate diversity dynamics for clades in diversity decline? Syst. Biol. 68, 47–62 (2019).
Google Scholar
Louca, S. & Pennell, M. W. Extant timetrees are consistent with a myriad of diversification histories. Nature 580, 502–505 (2020).
Google Scholar
Sohn, J.-C., Labandeira, C. C. & Davis, D. R. The fossil record and taphonomy of butterflies and moths (Insecta, Lepidoptera): implications for evolutionary diversity and divergence-time estimates. BMC Evol. Biol. 15, 12 (2015).
Google Scholar
de Jong, R. Fossil butterflies, calibration points and the molecular clock (Lepidoptera: Papilionoidea). Zootaxa 4270, 1 (2017).
Google Scholar
Edger, P. P. et al. The butterfly plant arms-race escalated by gene and genome duplications. Proc. Natl Acad. Sci. USA 112, 8362–8366 (2015).
Google Scholar
Allio, R. et al. Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants. Nat. Commun. 12, 354 (2021).
Google Scholar
Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312–1313 (2014).
Google Scholar
Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969–1973 (2012).
Google Scholar
Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T. & Calcott, B. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol. Biol. Evol. 34, 772–773. https://doi.org/10.1093/molbev/msw260 (2016).
Smith, S. A. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographical analysis of the Northern Hemisphere plant clade Caprifolieae. J. Biogeogr. 36, 2324–2337 (2009).
Google Scholar
Beeravolu Reddy, C. & Condamine, F. An extended maximum likelihood inference of geographic range evolution by dispersal, local extinction and cladogenesis. bioRxiv. https://doi.org/10.1101/038695 (2016).
Rabosky, D. L. Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. PLoS ONE 9, e89543 (2014).
Google Scholar
Rabosky, D. L. et al. BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees. Methods Ecol. Evol. 5, 701–707 (2014).
Google Scholar
Rabosky, D. L., Mitchell, J. S. & Chang, J. Is BAMM flawed? theoretical and practical concerns in the analysis of multi-rate diversification models. Syst. Biol. 66, 477–498 (2017).
Google Scholar
Dudas, G. et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature 544, 309–315 (2017).
Google Scholar
Morlon, H., Parsons, T. L. & Plotkin, J. B. Reconciling molecular phylogenies with the fossil record. Proc. Natl Acad. Sci. 108, 16327–16332 (2011).
Google Scholar
Morlon, H. et al. RPANDA: an R package for macroevolutionary analyses on phylogenetic trees. Methods Ecol. Evol. 7, 589–597 (2016).
Google Scholar
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