Pfeffer C, Larsen S, Song J, Dong M, Besenbacher F, Meyer RL, et al. Filamentous bacteria transport electrons over centimetre distances. Nature. 2012;491:218–21.
Google Scholar
Meysman FJR, Cornelissen R, Trashin S, Bonné R, Martinez SH, van der Veen J, et al. A highly conductive fibre network enables centimetre-scale electron transport in multicellular cable bacteria. Nat Commun. 2019;10:4120.
Google Scholar
Nielsen LP, Risgaard-Petersen N, Fossing H, Christensen PB, Sayama M. Electric currents couple spatially separated biogeochemical processes in marine sediment. Nature. 2010;463:1071–4.
Google Scholar
Malkin SY, Rao AM, Seitaj D, Vasquez-Cardenas D, Zetsche EM, Hidalgo-Martinez S, et al. Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor. Isme J. 2014;8:1843–54.
Google Scholar
Burdorf LDW, Tramper A, Seitaj D, Meire L, Hidalgo-Martinez S, Zetsche EM, et al. Long-distance electron transport occurs globally in marine sediments. Biogeosciences. 2017;14:683–701.
Google Scholar
Marzocchi U, Bonaglia S, van de Velde S, Hall POJ, Schramm A, Risgaard-Petersen N, et al. Transient bottom water oxygenation creates a niche for cable bacteria in long-term anoxic sediments of the Eastern Gotland Basin. Environ Microbiol. 2018;20:3031–41.
Google Scholar
Risgaard-Petersen N, Kristiansen M, Frederiksen RB, Dittmer AL, Bjerg JT, Trojan D, et al. Cable bacteria in freshwater sediments. Appl Environ Microbiol. 2015;81:6003–11.
Google Scholar
Risgaard-Petersen N, Revil A, Meister P, Nielsen LP. Sulfur, iron-, and calcium cycling associated with natural electric currents running through marine sediment. Geochim Cosmochim Acta. 2012;92:1–13.
Google Scholar
Seitaj D, Schauer R, Sulu-Gambari F, Hidalgo-Martinez S, Malkin SY, Burdorf LD, et al. Cable bacteria generate a firewall against euxinia in seasonally hypoxic basins. Proc Natl Acad Sci USA. 2015;112:13278–83.
Google Scholar
Sulu-Gambari F, Seitaj D, Meysman FJR, Schauer R, Polerecky L, Slomp CP. Cable bacteria control iron–phosphorus dynamics in sediments of a coastal hypoxic basin. Environ Sci Technol. 2016;50:1227–33.
Google Scholar
Marzocchi U, Trojan D, Larsen S, Meyer RL, Revsbech NP, Schramm A, et al. Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment. ISME J. 2014;8:1682–90.
Google Scholar
Risgaard-Petersen N, Damgaard LR, Revil A, Nielsen LP. Mapping electron sources and sinks in a marine biogeobattery. J Geophys Res Biogeosci. 2014;119:1475–86.
Google Scholar
Kessler AJ, Wawryk M, Marzocchi U, Roberts KL, Wong WW, Risgaard‐Petersen N, et al. Cable bacteria promote DNRA through iron sulfide dissolution. Limnol Oceanogr. 2018;64:1228–38.
Google Scholar
Kjeldsen KU, Schreiber L, Thorup CA, Boesen T, Bjerg JT, Yang T, et al. On the evolution and physiology of cable bacteria. Proc Natl Acad Sci USA. 2019;116:19116–25.
Google Scholar
MacGregor BJ, Biddle JF, Siebert JR, Staunton E, Hegg EL, Matthysse AG, et al. Why orange Guaymas Basin Beggiatoa spp. are orange: single-filament-genome-enabled identification of an abundant octaheme cytochrome with hydroxylamine oxidase, hydrazine oxidase, and nitrite reductase activities. Appl Environ Microbiol. 2013;79:1183–90.
Google Scholar
Buckley A, MacGregor B, Teske A. Identification, expression and activity of candidate nitrite reductases from orange Beggiatoaceae, Guaymas Basin. Front Microbiol. 2019;10:644.
Google Scholar
Sandfeld T, Marzocchi U, Petro C, Schramm A, Risgaard-Petersen N. Electrogenic sulfide oxidation mediated by cable bacteria stimulates sulfate reduction in freshwater sediments. ISME J. 2020;14:1233–46.
Google Scholar
Damgaard LR, Risgaard‐Petersen N, Nielsen LP. Electric potential microelectrode for studies of electrobiogeophysics. J Geophys Res Biogeosci. 2014;119:1906–17.
Google Scholar
Archie GE. The electrical resistivity log as an aid in determining some reservoir characteristics. T Am I Min Met Eng. 1942;146:54–61.
Nielsen LP. Denitrification in sediment determined from nitrogen isotope pairing. Fems Microbiol Ecol. 1992;86:357–62.
Google Scholar
Risgaard-Petersen N, Rysgaard S. Nitrate reduction in sediments and waterlogged soil measured by 15N techniques. In: Alef K, Nannipieri P, editors. Methods in applied soil microbiology and biochemistry. Academic Press; 1995. p. 287–95.
Risgaard-Petersen N, Rysgaard S, Revsbech NP. Combined microdiffusion-hypobromite oxidation method for determining N-15 isotope in ammonium. Soil Sci Soc Am J. 1995;59:1077–80.
Google Scholar
Bower CE, Holmhansen T. A salicylate-hypochlorite method for determining ammonia in seawater. Can J Fish Aquat Sci. 1980;37:794–8.
Google Scholar
Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15:550.
Google Scholar
Bushmanova E, Antipov D, Lapidus A, Prjibelski AD. rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data. Gigascience. 2019; 8:giz100.
Rho M, Tang H, Ye Y. FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res. 2010;38:e191.
Google Scholar
Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, et al. FunGene: the functional gene pipeline and repository. Front Microbiol. 2013;4:291.
Google Scholar
Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA. Refined NrfA phylogeny improves PCR-based nrfA gene detection. Appl Environ Micro. 2014;80:2110–9.
Google Scholar
Jepson BJN, Marietou A, Mohan S, Cole JA, Butler CS, Richardson DJ. Evolution of the soluble nitrate reductase: defining the monomeric periplasmic nitrate reductase subgroup. Biochem Soc T. 2006;34:122–6.
Google Scholar
Haase D, Hermann B, Einsle O, Simon J. Epsilonproteobacterial hydroxylamine oxidoreductase (epsilon Hao): characterization of a ‘missing link’ in the multihaem cytochrome c family. Mol Microbiol. 2017;105:127–38.
Google Scholar
Klotz MG, Schmid MC, Strous M, op den Camp HJ, Jetten MS, Hooper AB. Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria. Environ Microbiol. 2008;10:3150–63.
Google Scholar
Betlach MR, Tiedje JM. Kinetic explanation for accumulation of nitrite, nitric-oxide, and nitrous-oxide during bacterial denitrification. Appl Environ Micro. 1981;42:1074–84.
Google Scholar
Simon J, Klotz MG. Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations. BBA Bioenerg. 2013;1827:114–35.
Google Scholar
Hermans M, Lenstra WK, Hidalgo-Martinez S, van Helmond N, Witbaard R, Meysman FJR, et al. Abundance and biogeochemical impact of cable bacteria in Baltic sea sediments. Environ Sci Technol. 2019;53:7494–503.
Google Scholar
Marshall IPG, Starnawski P, Cupit C, Fernandez Caceres E, Ettema TJG, Schramm A, et al. The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins. Environ Microbiol Rep. 2017;9:397–403.
Google Scholar
Lefevre CT, Frankel RB, Abreu F, Lins U, Bazylinski DA. Culture-independent characterization of a novel, uncultivated magnetotactic member of the Nitrospirae phylum. Environ Microbiol. 2011;13:538–49.
Google Scholar
Logares R, Brate J, Bertilsson S, Clasen JL, Shalchian-Tabrizi K, Rengefors K. Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol. 2009;17:414–22.
Google Scholar
Trojan D, Schreiber L, Bjerg JT, Boggild A, Yang T, Kjeldsen KU, et al. A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema. Syst Appl Microbiol. 2016;39:297–306.
Google Scholar
Dam AS, Marshall IPG, Risgaard-Petersen N, Burdorf LDW, Marzocchi U. Effect of salinity on cable bacteria species composition and diversity. Environ Microbiol. 2021;23:2605–16.
Google Scholar
Jones CM, Stres B, Rosenquist M, Hallin S. Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Mol Biol Evol. 2008;25:1955–66.
Google Scholar
Graf DR, Jones CM, Hallin S. Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions. PLoS ONE. 2014;9:e114118.
Google Scholar
Kraft B, Strous M, Tegetmeyer HE. Microbial nitrate respiration – Genes, enzymes and environmental distribution. J Biotechnol. 2011;155:104–17.
Google Scholar
Simon J, Sänger M, Schuster SC, Gross R. Electron transport to periplasmic nitrate reductase (NapA) of Wolinella succinogenes is independent of a NapC protein. Mol Microbiol. 2003;49:69–79.
Google Scholar
Bjerg JT, Boschker HTS, Larsen S, Berry D, Schmid M, Millo D, et al. Long-distance electron transport in individual, living cable bacteria. Proc Natl Acad Sci USA. 2018;115:5786–91.
Google Scholar
Venceslau SS, Lino RR, Pereira IAC. The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration. J Biol Chem. 2010;285:22774–83.
Google Scholar
Meysman FJR, Risgaard-Petersen N, Malkin SY, Nielsen LP. The geochemical fingerprint of microbial long-distance electron transport in the seafloor. Geochim Cosmochim Ac. 2015;152:122–42.
Google Scholar
Kern M, Simon J. Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria. Biochim Biophys Acta. 2009;1787:646–56.
Google Scholar
Chen Y, Wang F. Insights on nitrate respiration by Shewanella. Front Mar Sci. 2015; 1:80.
Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, et al. Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. ISME J. 2009;3:966–76.
Google Scholar
Geerlings NMJ, Karman C, Trashin S, As KS, Kienhuis MVM, Hidalgo-Martinez S, et al. Division of labor and growth during electrical cooperation in multicellular cable bacteria. Proc Natl Acad Sci USA. 2020;117:5478–85.
Google Scholar
Scilipoti S, Koren K, Risgaard-Petersen N, Schramm A, Nielsen LP. Oxygen consumption of individual cable bacteria. Sci Adv. 2021; 7:eabe1870.
Bjerg JT, Damgaard LR, Holm SA, Schramm A, Nielsen LP. Motility of electric cable bacteria. Appl Environ Microbiol. 2016;82:3816–21.
Google Scholar
Dam A-S, Marshall IPG, Petersen NR, Burdorf LDW, Marzocchi U. Effect of salinity on cable bacteria species composition and diversity. Environ Microbiol. 2021;23:2605–16.
Westram R, Bader K, Pruesse E, Kumar Y, Meier H, Glöckner FO, et al. ARB: a software environment for sequence data. In: de Bruijn FJ, editor. Handbook of molecular microbial ecology I: metagenomics and complementary approaches. John Wiley & Sons, Inc.; Hoboken, New Jersey; 2011. p. 399–406.
Source: Ecology - nature.com
