Urban, M. C. & Skelly, D. K. Evolving metacommunities: Toward an evolutionary perspective on metacommunities. Ecology 87, 1616–1626 (2006).
Google Scholar
Cortez, M. H. & Ellner, S. P. Understanding rapid evolution in predator-prey interactions using the theory of fast-slow dynamical systems. Am. Nat. 176, E109–E127. https://doi.org/10.1086/656485 (2010).
Google Scholar
Ellner, S. P., Geber, M. A. & Hairston, N. G. Does rapid evolution matter? Measuring the rate of contemporary evolution and its impacts on ecological dynamics. Ecol. Lett. 14, 603–614. https://doi.org/10.1111/j.1461-0248.2011.01616.x (2011).
Google Scholar
Yoder, J. B. et al. Ecological opportunity and the origin of adaptive radiations. J. Evol. Biol. 23, 1581–1596. https://doi.org/10.1111/j.1420-9101.2010.02029.x (2010).
Google Scholar
Losos, J. B. Adaptive radiation, ecological opportunity, and evolutionary determinism. Am. Nat. 175, 623–639. https://doi.org/10.1086/652433 (2010).
Google Scholar
Meyer, J. R. & Kassen, R. The effects of competition and predation on diversification in a model adaptive radiation. Nature 446, 432–435. https://doi.org/10.1038/nature05599 (2007).
Google Scholar
Stroud, J. T. & Losos, J. B. Ecological opportunity and adaptive radiation. Annu. Rev. Ecol. Evol. Syst. 47(47), 507–532. https://doi.org/10.1146/annurev-ecolsys-121415-032254 (2016).
Google Scholar
Keller, I. & Seehausen, O. Thermal adaptation and ecological speciation. Mol. Ecol. 21, 782–799. https://doi.org/10.1111/j.1365-294X.2011.05397.x (2012).
Google Scholar
Schluter, D., Price, T. D. & Grant, P. R. ecological character displacement in Darwin Finches. Science 227, 1056–1059. https://doi.org/10.1126/science.227.4690.1056 (1985).
Google Scholar
Munkemuller, T. & Gallien, L. VirtualCom: A simulation model for eco-evolutionary community assembly and invasion. Methods Ecol. Evol. 6, 735–743. https://doi.org/10.1111/2041-210x.12364 (2015).
Google Scholar
Munoz, F. et al. ecolottery: Simulating and assessing community assembly with environmental filtering and neutral dynamics in R. Methods Ecol. Evol. 9, 693–703. https://doi.org/10.1111/2041-210x.12918 (2018).
Google Scholar
Ruffley, M., Peterson, K., Week, B., Tank, D. C. & Harmon, L. J. Identifying models of trait-mediated community assembly using random forests and approximate Bayesian computation. Ecol. Evol. 9, 13218–13230. https://doi.org/10.1002/ece3.5773 (2019).
Google Scholar
van der Plas, F. et al. A new modeling approach estimates the relative importance of different community assembly processes. Ecology 96, 1502–1515. https://doi.org/10.1890/14-0454.1 (2015).
Google Scholar
Stegen, J. C. et al. Quantifying community assembly processes and identifying features that impose them. ISME J. 7, 2069–2079. https://doi.org/10.1038/ismej.2013.93 (2013).
Google Scholar
Dieckmann, U. & Doebeli, M. On the origin of species by sympatric speciation. Nature 400, 354–357 (1999).
Google Scholar
Geritz, S. A. H., Kisdi, E., Meszena, G. & Metz, J. A. J. Evolutionarily singular strategies and the adaptive growth and branching of the evolutionary tree. Evol. Ecol. 12, 35–57 (1998).
Google Scholar
Vellend, M. Conceptual synthesis in community ecology. Q. R. Biol. 85, 183–206 (2010).
Google Scholar
Urban, M. C. et al. The evolutionary ecology of metacommunities. Trends Ecol. Evol. 23, 311–317 (2008).
Google Scholar
Pausas, J. G. & Verdu, M. The jungle of methods for evaluating phenotypic and phylogenetic structure of communities. Bioscience 60, 614–625. https://doi.org/10.1525/bio.2010.60.8.7 (2010).
Google Scholar
Mouquet, N. et al. Ecophylogenetics: Advances and perspectives. Biol. Rev. 87, 769–785. https://doi.org/10.1111/j.1469-185X.2012.00224.x (2012).
Google Scholar
Kraft, N. J. B., Cornwell, W. K., Webb, C. O. & Ackerly, D. D. Trait evolution, community assembly, and the phylogenetic structure of ecological communities. Am. Nat. 170, 271–283. https://doi.org/10.1086/519400 (2007).
Google Scholar
Wilson, J. B., Weiher, E. & Keddy, P. Assembly Rules in Plant Communities (Cambridge University Press, 1999).
Google Scholar
MacArthur, R. H. & Levins, R. Limiting similarity convergence and divergence of coexisting species. Am. Nat. 101, 377–385 (1967).
Google Scholar
Webb, C. O., Ackerly, D. D., McPeek, M. A. & Donoghue, M. J. Phylogenies and community ecology. Annu. Rev. Ecol. Syst. 33, 475–505. https://doi.org/10.1146/annurev.ecolysis.33.010802.150448 (2002).
Google Scholar
Pontarp, M., Brännström, A. & Petchey, O. L. Inferring community assembly processes from macroscopic patterns using dynamic eco-evolutionary models and Approximate Bayesian Computation (ABC). Methods Ecol. Evol. 10, 450–460. https://doi.org/10.1111/2041-210x.13129 (2019).
Google Scholar
Mittelbach, G. G. & Schemske, D. W. Ecological and evolutionary perspectives on community assembly. Trends Ecol. Evol. 30, 241–247. https://doi.org/10.1016/j.tree.2015.02.008 (2015).
Google Scholar
Cavender-Bares, J., Kozak, K. H., Fine, P. V. A. & Kembel, S. W. The merging of community ecology and phylogenetic biology. Ecol. Lett. 12, 693–715. https://doi.org/10.1111/j.1461-0248.2009.01314.x (2009).
Google Scholar
Pontarp, M. & Petchey, O. L. Ecological opportunity and predator–prey interactions: Linking eco-evolutionary processes and diversification in adaptive radiations. Proc. R. Soc. B Biol. Sci. https://doi.org/10.1098/rspb.2017.2550 (2018).
Google Scholar
Seehausen, O. African cichlid fish: A model system in adaptive radiation research. Proc. R. Soc. B Biol. Sci. 273, 1987–1998. https://doi.org/10.1098/rspb.2006.3539 (2006).
Google Scholar
Schluter, D. The Ecology of Adaptive Radiation (Columbia University Press, 2000).
Nosil, P. Ecological Speciation (Oxford University Press, 2012).
Google Scholar
Christiansen, F. B. & Loeschcke, V. Evolution and intraspecific exploitative competition I. One-locus theory for small additive gene effects. Theor. Popul. Biol. 18, 297–313 (1980).
Google Scholar
Brown, J. S. & Vincent, T. L. A theory for the evolutionary game. Theor. Popul. Biol. 31, 140–166 (1987).
Google Scholar
Doebeli, M. & Dieckmann, U. Speciation along environmental gradients. Nature 421, 259–264. https://doi.org/10.1038/Nature01274 (2003).
Google Scholar
Brose, U., Williams, R. J. & Martinez, N. D. Allometric scaling enhances stability in complex food webs. Ecol. Lett. 9, 1228–1236. https://doi.org/10.1111/j.1461-0248.2006.00978.x (2006).
Google Scholar
Leyequien, E., de Boer, W. F. & Cleef, A. Influence of body size on coexistence of bird species. Ecol. Res. 22, 735–741. https://doi.org/10.1007/s11284-006-0311-6 (2007).
Google Scholar
Yvon-Durocher, G. et al. Across ecosystem comparisons of size structure: Methods, approaches and prospects. Oikos 120, 550–563. https://doi.org/10.1111/j.1600-0706.2010.18863.x (2011).
Google Scholar
Rudolf, V. H. W. Seasonal shifts in predator body size diversity and trophic interactions in size-structured predator-prey systems. J. Anim. Ecol. 81, 524–532. https://doi.org/10.1111/j.1365-2656.2011.01935.x (2012).
Google Scholar
DeLong, J. P. & Vasseur, D. A. A dynamic explanation of size-density scaling in carnivores. Ecology 93, 470–476 (2012).
Google Scholar
DeLong, J. P. & Vasseur, D. A. Size-density scaling in protists and the links between consumer-resource interaction parameters. J. Anim. Ecol. 81, 1193–1201. https://doi.org/10.1111/j.1365-2656.2012.02013.x (2012).
Google Scholar
Violle, C. et al. Let the concept of trait be functional!. Oikos 116, 882–892. https://doi.org/10.1111/j.2007.0030-1299.15559.x (2007).
Google Scholar
Pontarp, M., Ripa, J. & Lundberg, P. On the origin of phylogenetic structure in competitive metacommunities. Evol. Ecol. Res. 14, 269–284 (2012).
Pontarp, M., Ripa, J. & Lundberg, P. The biogeography of adaptive radiations and the geographic overlap of sister species. Am. Nat. 186, 565–581 (2015).
Google Scholar
Barabás, G., Pigolotti, S., Gyllenberg, M., Dieckmann, U. & Meszéna, G. Continuous coexistence or discrete species? A new review of an old question. (2012).
Brännström, A. et al. Modelling the ecology and evolution of communities: A review of past achievements, current efforts, and future promises. Evol. Ecol. Res. 14, 601–625 (2012).
Emerson, B. C. & Gillespie, R. G. Phylogenetic analysis of community assembly and structure over space and time. Trends Ecol. Evol. 23, 619–630 (2008).
Google Scholar
Vamosi, S. M., Heard, S. B., Vamosi, J. C. & Webb, C. O. Emerging patterns in the comparative analysis of phylogenetic community structure. Mol. Ecol. 18, 572–592. https://doi.org/10.1111/j.1365-294X.2008.04001.x (2009).
Google Scholar
Sjödin, H., Ripa, J. & Lundberg, P. Principles of niche expansion. Proc. R. Soc. B Biol. Sci. https://doi.org/10.1098/rspb.2018.2603 (2018).
Google Scholar
Ackermann, M. & Doebeli, M. Evolution of niche width and adaptive diversification. Evolution 58, 2599–2612 (2004).
Google Scholar
Urban, M. C. & De Meester, L. Community monopolization: Local adaptation enhances priority effects in an evolving metacommunity. Proc. R. Soc. B. Biol. Sci. 276, 4129–4138 (2009).
Google Scholar
Urban, M. C., De Meester, L., Vellend, M., Stoks, R. & Vanoverbeke, J. A crucial step toward realism: responses to climate change from an evolving metacommunity perspective. Evol. Appl. 5, 154–167. https://doi.org/10.1111/j.1752-4571.2011.00208.x (2012).
Google Scholar
Pontarp, M. & Wiens, J. J. The origin of species richness patterns along environmental gradients: Uniting explanations based on time, diversification rate and carrying capacity. J. Biogeogr. 44, 722–735. https://doi.org/10.1111/jbi.12896 (2017).
Google Scholar
Pontarp, M. & Petchey, O. L. Community trait overdispersion due to trophic interactions: Concerns for assembly process inference. Proc. R. Soc. B Biol. Sci. https://doi.org/10.1098/rspb.2016.1602 (2016).
Google Scholar
Pontarp, M. et al. The latitudinal diversity gradient: Novel understanding through mechanistic eco-evolutionary. Trends Ecol. Evol. 34, 211–223. https://doi.org/10.1016/j.tree.2018.11.009 (2019).
Google Scholar
Case, T. J. An Illustrated Guide to Theoretical Ecology (Oxford University Press, Inc, 2000).
Barabas, G., Michalska-Smith, M. J. & Allesina, S. The effect of intra- and interspecific competition on coexistence in multispecies communities. Am. Nat. 188, E1–E12. https://doi.org/10.1086/686901 (2016).
Google Scholar
Heinz, S. K., Mazzucco, R. & Dieckmann, U. Speciation and the evolution of dispersal along environmental gradients. Evol. Ecol. 23, 53–70. https://doi.org/10.1007/s10682-008-9251-7 (2009).
Google Scholar
Metz, J. A. J., Nisbet, R. M. & Geritz, S. A. H. How should we define fitness for general ecolgical scenarios. Trends Ecol. Evol. 7, 198–202. https://doi.org/10.1016/0169-5347(92)90073-k (1992).
Google Scholar
Doebeli, M. & Dieckmann, U. Evolutionary branching and sympatric speciation caused by different types of ecological interactions. Am. Nat. 156, S77–S101. https://doi.org/10.1086/303417 (2000).
Google Scholar
Ito, H. C. & Dieckmann, U. A new mechanism for recurrent adaptive Radiations. Am. Nat. 170, E96–E111. https://doi.org/10.1086/521229 (2007).
Google Scholar
Cressman, R. et al. Unlimited niche packing in a Lotka-Volterra competition game. Theor. Popul. Biol. 116, 1–17 (2017).
Google Scholar
Webb, C. O., Ackerly, D. D. & Kembel, S. W. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24, 2098–2100. https://doi.org/10.1093/bioinformatics/btn358 (2008).
Google Scholar
Harmon-Threatt, A. N. & Ackerly, D. D. Filtering across spatial scales: Phylogeny, biogeography and community structure in bumble bees. PLoS ONE https://doi.org/10.1371/journal.pone.0060446 (2013).
Google Scholar
Pybus, O. G. & Harvey, P. H. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. B Biol. Sci. 267, 2267–2272. https://doi.org/10.1098/rspb.2000.1278 (2000).
Google Scholar
Source: Ecology - nature.com
