Grant, P. R. & Grant, B. R. How and why Species Multiply: The Radiation of Darwin’s Finches. (Princeton University Press, 2008).
Baldwin, B. G. & Sanderson, M. J. Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proc. Natl Acad. Sci. USA 95, 9402–9406 (1998).
Losos, J. B. & Ricklefs, R. E. Adaptation and diversification on islands. Nature 457, 830–836 (2009).
Macarthur, R. H. & Wilson, E. O. The Theory of Island Biogeography. (Princeton University Press, 1967).
Lewontin, R. C. The organism as the subject and object of evolution. Scientia 77, 65 (1983).
Blows, M. W. & Hoffmann, A. A. A reassessment of genetic limits to evolutionary change. Ecology 86, 1371–1384 (2005).
Hansen, T. F. & Houle, D. Measuring and comparing evolvability and constraint in multivariate characters. J. Evol. Biol. 21, 1201–1219 (2008).
West-Eberhard, M. J. Developmental Plasticity and Evolution. (Oxford University Press, 2003).
Wagner, G. P. & Altenberg, L. Perspective: complex adaptations and the evolution of evolvability. Evolution 50, 967–976 (1996).
Hendrikse, J. L., Parsons, T. E. & Hallgrímsson, B. Evolvability as the proper focus of evolutionary developmental biology. Evol. Dev. 9, 393–401 (2007).
Klingenberg, C. P. Studying morphological integration and modularity at multiple levels: concepts and analysis. Philos. Trans. R. Soc. B 369, 20130249 (2014).
Jablonski, D. Approaches to macroevolution: 1. General concepts and origin of variation. Evol. Biol. 44, 427–450 (2017).
Uller, T., Moczek, A. P., Watson, R. A., Brakefield, P. M. & Laland, K. N. Developmental bias and evolution: a regulatory network perspective. Genetics 209, 949–966 (2018).
Hansen, T. F. Is modularity necessary for evolvability? Remarks on the relationship between pleiotropy and evolvability. Biosystems 69, 83–94 (2003).
Goswami, A., Binder, W. J., Meachen, J. & O’Keefe, F. R. The fossil record of phenotypic and modularity: a deep-time perspective on developmental and evolutionary dynamics. Proc. Natl Acad. Sci. USA 112, 4891–4896 (2015).
Armbruster, W. S., Pelabon, C., Bolstad, G. H. & Hansen, T. F. Integrated phenotypes: understanding trait covariation in plants and animals. Philos. Trans. R. Soc. B 369, 20130245 (2014).
Felice, R. N., Randau, M. & Goswami, A. A fly in a tube: macroevolutionary expectations for integrated phenotypes. Evolution 72, 2580–2594 (2018).
Goswami, A., Smaers, J. B., Soligo, C. & Polly, P. D. The macroevolutionary consequences of phenotypic integration: from development to deep time. Philos. Trans. R. Soc. B 369, 20130254 (2014).
Cheverud, J. M. Phenotypic, genetic, and environmental morphological integration in the cranium. Evolution 36, 499–516 (1982).
Wagner, G. P., Pavlicev, M. & Cheverud, J. M. The road to modularity. Nat. Rev. Genet. 8, 921–931 (2007).
Melo, D., Porto, A., Cheverud, J. M. & Marroig, G. Modularity: genes, development and evolution. Annu. Rev. Ecol. Evol. Syst. 47, 463–486 (2016).
Gerhart, J. & Kirschner, M. The theory of facilitated variation. Proc. Natl Acad. Sci. USA 104, 8582–8589 (2007).
Villmoare, B., Fish, J. & Jungers, W. Selection, morphological integration, and strepsirrhine locomotor adaptations. Evol. Biol. 38, 88–99 (2011).
Navalon, G., Marugan-Lobon, J., Bright, J. A., Cooney, C. R. & Rayfield, E. J. The consequences of craniofacial integration for the adaptive radiations of Darwin’s finches and Hawaiian honeycreepers. Nat. Ecol. Evol. 4, 270–278 (2020).
Nicholson, K. E. et al. Mainland colonization by island lizards. J. Biogeogr. 32, 929–938 (2005).
Poe, S. et al. A phylogenetic, biogeographic, and taxonomic study of all extant species of Anolis (Squamata; Iguanidae). Syst. Biol. 66, 663–697 (2017).
Jackman, T., Losos, J. B., Larson, A. & de Queiroz, K. in Molecular Evolution and Adaptive Radiation (eds Givnish, T. & Systma, K.) 535–557 (Cambridge University Press, 1997).
Underwood, G. The anoles of the Eastern Caribbean (Sauria, Iguanidae). Revisionary notes. Bull. Mus. Comp. Zool., Part III 121, 191–226 (1959).
Losos, J. B. Lizards in an Evolutionary Tree: Ecology and Adaptive Radiation of Anoles. Vol. 10 (University of California Press, 2009).
Pinto, G., Mahler, D. L., Harmon, L. J. & Losos, J. B. Testing the island effect in adaptive radiation: rates and patterns of morphological diversification in Caribbean and mainland Anolis lizards. Proc. R. Soc. B 275, 2749–2757 (2008).
Poe, S. & Anderson, C. G. The existence and evolution of morphotypes in Anolis lizards: coexistence patterns, not adaptive radiations, distinguish mainland and island faunas. PeerJ 6, e6040 (2019).
Irschick, D. J., Vitt, L. J., Zani, P. A. & Losos, J. B. A comparison of evolutionary radiations in mainland and Caribbean Anolis lizards. Ecology 78, 2191–2203 (1997).
Macrini, T. E., Irschick, D. J. & Losos, J. B. Ecomorphological differences in toepad characteristics between mainland and island anoles. J. Herpetol. 37, 52–58 (2003).
Velasco, J. A. & Herrel, A. Ecomorphology of Anolis lizards of the Choco’ region in Colombia and comparisons with Greater Antillean ecomorphs. Biol. Biol. J. Linn. Soc. 92, 403–403 (2007).
Williams, E. E. in Evol. Biol. Vol. 6 (eds Theodosius Dobzhansky, MaxK Hecht, & WilliamC Steere) Ch. 3, 47–89 (Springer US, 1972).
Williams, E. E. in Lizard ecology: studies of a model organism (eds Pianka, E. R., Huey, R. B. & Schoener, T. W.) 326–370 (Harvard University Press, 1983).
Losos, J. B., Jackman, T. R., Larson, A., Queiroz, K. & Rodriguez-Schettino, L. Contingency and determinism in replicated adaptive radiations of island lizards. Science 279, 2115–2118 (1998).
Tinius, A. & Russell, A. P. Geometric morphometric analysis of the breast-shoulder apparatus of lizards: a test case using Jamaican anoles (Squamata: Dactyloidae). Anat. Rec. 297, 410–432 (2014).
Tinius, A., Russell, A. P., Jamniczky, H. A. & Anderson, J. S. What is bred in the bone: ecomorphological associations of pelvic girdle form in greater Antillean Anolis lizards. J. Morphol. 279, 1016–1030 (2018).
Adams, D. C. & Collyer, M. L. Phylogenetic comparative methods and the evolution of multivariate phenotypes. Annu. Rev. Ecol. Evol. Syst. 50, 405–425 (2019).
Legendre, P. & Legendre, L. Numerical Ecology. (Elsevier, 2012).
Collyer, M. L., Davis, M. A. & Adams, D. C. Making heads or tails of combined landmark configurations in geometric morphometric data. Evol. Biol. 47, 193–205 (2020).
Kumar, S., Stecher, G., Suleski, M. & Hedges, S. B. TimeTree: a resource for timelines, timetrees, and divergence times. Mol. Biol. Evol. 34, 1812–1819 (2017).
Nishimoto, S. & Logan, M. P. O. Subdivision of the lateral plate mesoderm and specification of the forelimb and hindlimb forming domains. Semin. Cell Dev. Biol. 49, 102–108 (2016).
Shou, S., Scott, V., Reed, C., Hitzemann, R. & Stadler, H. S. Transcriptome analysis of the murine forelimb and hindlimb autopod. Dev. Dyn. 234, 74–89 (2005).
Margulies, E. H., Kardia, S. L. R. & Innis, J. W. A comparative molecular analysis of developing mouse forelimbs and hindlimbs using Serial Analysis of Gene Expression (SAGE). Genome Res. 11, 1686–1698 (2001).
Adams, D. C. & Collyer, M. L. On the comparison of the strength of morphological integration across morphometric datasets. Evolution 70, 2623–2631 (2016).
Adams, D. C. Evaluating modularity in morphometric data: challenges with the RV coefficient and a new test measure. Methods Ecol. Evol. 7, 565–572 (2016).
Adams, D. C. & Collyer, M. L. Comparing the strength of modular signal, and evaluating alternative modular hypotheses, using covariance ratio effect sizes with morphometric data. Evolution 73, 2352–2367 (2019).
Dellinger, A. S. et al. Modularity increases rate of floral evolution and adaptive success for functionally specialized pollination systems. Commun. Biol. 2, 453 (2019).
Venditti, C., Meade, A. & Pagel, M. Multiple routes to mammalian diversity. Nature 479, 393–396 (2011).
Cooney, C. R. et al. Mega-evolutionary dynamics of the adaptive radiation of birds. Nature 542, 344 (2017).
Marki, P. Z., Kennedy, J. D., Cooney, C. R., Rahbek, C. & Fjeldsa, J. Adaptive radiation and the evolution of nectarivory in a large songbird clade. Evolution 73, 1226–1240 (2019).
Brown, R. L. What evolvability really is. Br. J. Philos. Sci. 65, 549–572 (2013).
Watson, R. A. & Szathmary, E. How can evolution learn? Trends Ecol. Evol. 31, 147–157 (2016).
Young, N. M. & Hallgrimsson, B. Serial homology and the evolution of mammalian limb covariation structure. Evolution 59, 2691–2704 (2005).
Young, N. M., Wagner, G. P. & Hallgrimsson, B. Development and the evolvability of human limbs. Proc. Natl Acad. Sci. USA 107, 3400–3405 (2010).
Kelly, E. M. & Sears, K. E. Reduced phenotypic covariation in marsupial limbs and the implications for mammalian evolution. Biol. J. Linn. Soc. 102, 22–36 (2011).
Bennett, C. V. & Goswami, A. Does developmental strategy drive limb integration in marsupials and monotremes? Mamm. Biol. 76, 79–83 (2011).
Martin-Serra, A. & Benson, R. B. J. Developmental constraints do not influence long-term phenotypic evolution of marsupial forelimbs as revealed by interspecific disparity and integration patterns. Am. Nat. 195, 547–560 (2020).
Parter, M., Kashtan, N. & Alon, U. Facilitated variation: how evolution learns from past environments to generalize to new environments. PLoS Comp. Biol. 4, e1000206 (2008).
Kouvaris, K., Clune, J., Kounios, L., Brede, M. & Watson, R. A. How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation. PLoS Comp. Biol. 13, e1005358 (2017).
Brun-Usan, M., Rago, A., Thies, C., Uller, T. & Watson, R. A. Developmental models reveal the role of phenotypic plasticity in explaining genetic evolvability. bioRxiv https://doi.org/10.1101/2020.06.29.179226 (2020).
Shanahan, T. Phylogenetic inertia and Darwin’s higher law. Stud. Hist. Philos. Sci. Part C 42, 60–68 (2011).
Houle, D., Bolstad, G. H., van der Linde, K. & Hansen, T. F. Mutation predicts 40 million years of fly wing evolution. Nature 548, 447–450 (2017).
Braendle, C., Baer, C. F. & Felix, M. A. Bias and evolution of the mutationally accessible phenotypic space in a developmental system. PLoS Genet. 6, e1000877 (2010).
Haber, A. Phenotypic covariation and morphological diversification in the ruminant skull. Am. Nat. 187, 576–591 (2016).
Schluter, D. Adaptive radiation along genetic lines of least resistance. Evolution 50, 1766–1774 (1996).
Hanot, P., Herrel, A., Guintard, C. & Cornette, R. The impact of artificial selection on morphological integration in the appendicular skeleton of domestic horses. J. Anat. 232, 657–673 (2018).
Penna, A., Melo, D., Bernardi, S., Oyarzabal, M. I. & Marroig, G. The evolution of phenotypic integration: How directional selection reshapes covariation in mice. Evolution 71, 2370–2380 (2017).
Watson, R. A., Wagner, G. P., Pavlicev, M., Weinreich, D. M. & Mills, R. The evolution of phenotypic correlations and “developmental memory”. Evolution 68, 1124–1138 (2014).
Donihue, C. M. et al. Hurricane effects on Neotropical lizards span geographic and phylogenetic scales. Proc. Natl Acad. Sci. USA 117, 10429–10434 (2020).
Feiner, N., Jackson, I. S. C., Munch, K. L., Radersma, R. & Uller, T. Plasticity and evolutionary convergence in the locomotor skeleton of Greater Antillean Anolis lizards. eLife 9, e57468 (2020).
Vanhooydonck, B. & Irschick, D. in Topics in functional and ecological vertebrate morphology (eds Aerts, P., D’Août, K., Herrel, A. & Van Damme, R.) (Shaker Publishing, 2002).
Schluter, D. The Ecology of Adaptive Radiation. (Oxford: Oxford University Press, 2000).
Roughgarden, J. Anolis Lizards of the Caribbean: Ecology, Evolution, and Plate Tectonics. (Oxford University Press, 1995).
Stacklies, W., Redestig, H., Scholz, M., Walther, D. & Selbig, J. pcaMethods-a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23, 1164–1167 (2007).
Losos, J. B. et al. Evolutionary implications of phenotypic plasticity in the hindlimb of the lizard Anolis sagrei. Evolution 54, 301–305 (2000).
Tinius, A. Geometric morphometric analysis of the breast-shoulder apparatus of Greater Antillean anole ecomorphs PhD thesis, (University of Calgary, 2016).
Cignoni, P. et al. in Eurographics Italian Chapter Conference (eds Scarano, V., De Chiara, R. & Erra, U.) (The Eurographics Association, 2008).
Geomorph: Software for geometric morphometric analyses. R package version 3.1.0. (2019).
Olsen, A. M. & Westneat, M. W. StereoMorph: an R package for the collection of 3D landmarks and curves using a stereo camera set-up. Methods Ecol. Evol. 6, 351–356 (2015).
Mahler, D. L., Ingram, T., Revell, L. J. & Losos, J. B. Exceptional convergence on the macroevolutionary landscape in island lizard radiations. Science 341, 292–295 (2013).
Rohlf, F. J. Shape statistics: procrustes superimpositions and tangent spaces. J. Classif. 16, 197–223 (1999).
Uetz, P., Freed, P. & Hosek, J. The Reptile Database http://www.reptile-database.org (2019).
Pyron, R. A., Burbrink, F. T. & Wiens, J. J. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evol. Biol. 13, 93 (2013).
Köhler, G. & Hedges, S. B. A revision of the green anoles of Hispaniola with description of eight new species (Reptilia, Squamata, Dactyloidae). Nov. Carib. 9, 1–135 (2016).
Hofmann, E. P. & Townsend, J. H. Origins and biogeography of the Anolis crassulus subgroup (Squamata: Dactyloidae) in the highlands of Nuclear Central America. BMC Evol. Biol. 17, 267 (2017).
Mahler, D. L. et al. Discovery of a giant chameleon-like lizard (Anolis) on hispaniola and its significance to understanding replicated adaptive radiations. Am. Nat. 188, 357–364 (2016).
Kohler, J., Hahn, M. & Kohler, G. Divergent evolution of hemipenial morphology in two cryptic species of mainland anoles related to Anolis polylepis. Salamandra 48, 1–11 (2012).
Kohler, G., Perez, R. G. T., Petersen, C. B. P. & De la Cruz, F. R. M. A revision of the Mexican Anolis (Reptilia, Squamata, Dactyloidae) from the Pacific versant west of the Isthmus de Tehuantepec in the states of Oaxaca, Guerrero, and Puebla, with the description of six new species. Zootaxa 3862, 1 (2014).
Revell, L. J. phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3, 217–223 (2012).
Nicholson, K. E., Crother, B. I., Guyer, C. & Savage, J. M. It is time for a new classification of anoles (Squamata: Dactyloidae). Zootaxa 3477, 1–108 (2012).
Goswami, A. & Finarelli, J. A. EMMLi: a maximum likelihood approach to the analysis of modularity. Evolution 70, 1622–1637 (2016).
Bookstein, F. L. et al. Cranial integration in Homo: singular warps analysis of the midsagittal plane in ontogeny and evolution. J. Hum. Evol. 44, 167–187 (2003).
Adams, D. C. Quantifying and comparing phylogenetic evolutionary rates for shape and other high-dimensional phenotypic data. Syst. Biol. 63, 166–177 (2014).
Xie, W. G., Lewis, P. O., Fan, Y., Kuo, L. & Chen, M. H. Improving marginal likelihood estimation for bayesian phylogenetic model selection. Syst. Biol. 60, 150–160 (2011).
Brown, M. B. & Forsythe, A. B. Robust tests for the equality of variances. J. Am. Stat. Assoc. 69, 364–367 (1974).
Levene, H. in Contributions to Probability and Statistics (Stanford University Press, 1960).
Kruskal, W. H. & Wallis, W. A. Use of ranks in one-criterion variance analysis. J. Am. Stat. Assoc. 47, 583–621 (1952).
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