in

Substrate control of sulphur utilisation and microbial stoichiometry in soil: Results of 13C, 15N, 14C, and 35S quad labelling

  • 1.

    Dong Y, Silbermann M, Speiser A, Forieri I, Linster E, Poschet G, et al. Sulfur availability regulates plant growth via glucose-TOR signaling. Nat Commun. 2017;8:1174.

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • 2.

    Freney JR, Melville GE, Williams CH. Soil organic matter fractions as sources of plant-available sulphur. Soil Biol Biochem. 1975;7:217–21.

    CAS 
    Article 

    Google Scholar 

  • 3.

    Kopittke PM, Dalal RC, Finn D, Menzies NW. Global changes in soil stocks of carbon, nitrogen, phosphorus, and sulphur as influenced by long‐term agricultural production. Global Change Biol. 2017;23:2509–19.

    Article 

    Google Scholar 

  • 4.

    Ciaffi M, Paolacci AR, Celletti S, Catarcione G, Kopriva S, Astolfi S. Transcriptional and physiological changes in the S assimilation pathway due to single or combined S and Fe deprivation in durum wheat (Triticum durum L.) seedlings. J Exp Bot. 2013;64:1663.

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • 5.

    Ma Q, Luo Y, Wen Y, Hill PW, Chadwick DR, Wu L, et al. Carbon and sulphur tracing from soil organic sulphur in plants and soil microorganisms. Soil Biol Biochem. 2020;150:107971.

    CAS 
    Article 

    Google Scholar 

  • 6.

    Piotrowska-Długosz A, Siwik-Ziomek A, Długosz J, Gozdowski D. Spatio-temporal variability of soil sulfur content and arylsulfatase activity at a conventionally managed arable field. Geoderma. 2017;295:107–18.

    Article 
    CAS 

    Google Scholar 

  • 7.

    Fitzgerald JW, Watwood ME. Amino-acid metabolism in forest soil—Isolation and turnover of organic matter covalently labelled with 35S-methionine. Soil Biol Biochem. 1988;20:833–8.

    CAS 
    Article 

    Google Scholar 

  • 8.

    Ma Q, Wen Y, Pan W, Macdonald A, Hill PW, Chadwick DR, et al. Soil carbon, nitrogen, and sulphur status affects the metabolism of organic S but not its uptake by microorganisms. Soil Biol Biochem. 2020;149:107943.

    CAS 
    Article 

    Google Scholar 

  • 9.

    Jan MT, Roberts P, Tonheim SK, Jones DL. Protein breakdown represents a major bottleneck in nitrogen cycling in grassland soils. Soil Biol Biochem. 2009;41:2272–82.

    CAS 
    Article 

    Google Scholar 

  • 10.

    Farrell M, Macdonald LM, Hill PW, Wanniarachchi SD, Farrar J, Bardgett RD, et al. Amino acid dynamics across a grassland altitudinal gradient. Soil Biol Biochem. 2014;76:179–82.

    CAS 
    Article 

    Google Scholar 

  • 11.

    Wilkinson A, Hill PW, Farrar JF, Jones DL, Bardgett RD. Rapid microbial uptake and mineralization of amino acids and peptides along a grassland productivity gradient. Soil Biol Biochem. 2014;72:75–83.

    CAS 
    Article 

    Google Scholar 

  • 12.

    Hill PW, Jones DL. Plant–microbe competition: does injection of isotopes of C and N into the rhizosphere effectively characterise plant use of soil N? N Phytol. 2018;221:796–806.

    Article 
    CAS 

    Google Scholar 

  • 13.

    Godwin CM, Cotner JB. Aquatic heterotrophic bacteria have highly flexible phosphorus content and biomass stoichiometry. ISME J. 2015;9:2324–27.

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • 14.

    Hartman WH, Ye R, Horwath WR, Tringe SG. A genomic perspective on stoichiometric regulation of soil carbon cycling. ISME J. 2017;11:2652–65.

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • 15.

    Manzoni S, Jackson RB, Trofymow JA, Porporato A. The global stoichiometry of litter nitrogen mineralization. Science. 2008;321:684–6.

    CAS 
    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 16.

    Cui J, Zhu Z, Xu X, Liu S, Jones DL, Kuzyakov Y, et al. Carbon and nitrogen recycling from microbial necromass to cope with C:N stoichiometric imbalance by priming. Soil Biol Biochem. 2020;142:107720.

    CAS 
    Article 

    Google Scholar 

  • 17.

    Wei X, Zhu Z, Liu Y, Luo Y, Deng Y, Xu X, et al. C:N:P stoichiometry regulates soil organic carbon mineralization and concomitant shifts in microbial community composition in paddy soil. Biol Fert Soils. 2020;56:1093–107.

    Article 
    CAS 

    Google Scholar 

  • 18.

    Maria M, Wolfgang W, Sophie ZB, Andreas R. Stoichiometric imbalances between terrestrial decomposer communities and their resources: mechanisms and implications of microbial adaptations to their resources. Front Microbiol. 2014;5:22.

    Google Scholar 

  • 19.

    Qiao N, Xu XL, Hu YH, et al. Carbon and nitrogen additions induce distinct priming effects along an organic-matter decay continuum. Sci Rep-UK. 2016;6:19865.

    CAS 
    Article 

    Google Scholar 

  • 20.

    Kirkby CA, Kirkegaard JA, Richardson AE, Wade LJ, Blanchard C, Batten G. Stable soil organic matter: a comparison of C:N:P:S ratios in Australian and other world soils. Geoderma. 2011;163:197–208.

    CAS 
    Article 

    Google Scholar 

  • 21.

    Manzoni S, Čapek P, Mooshammer M, Lindahl BD, Richter A, Šantrůčková H. Optimal metabolic regulation along resource stoichiometry gradients. Ecol Lett. 2017;20:1182–91.

    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 22.

    Mooshammer M, Wanek W, Hämmerle I, Fuchslueger L, Hofhansl F, Knoltsch A, et al. Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling. Nat Commun. 2014;5:3694.

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • 23.

    Delgado-Baquerizo M, Reich PB, Khachane AN, Campbell CD, Thomas N, Freitag TE, et al. It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environ Microbiol. 2017;19:1176–88.

    CAS 
    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 24.

    Mayor JR, Mack MC, Schuur EAG. Decoupled stoichiometric, isotopic, and fungal responses of an ectomycorrhizal black spruce forest to nitrogen and phosphorus additions. Soil Biol Biochem. 2015;88:247–56.

    CAS 
    Article 

    Google Scholar 

  • 25.

    Mooshammer M, Hofhansl F, Frank AH, Wanek W, Hämmerle I, Leitner S, et al. Decoupling of microbial carbon, nitrogen, and phosphorus cycling in response to extreme temperature events. Sci Adv. 2017;3:e1602781.

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • 26.

    Chen J, Seven J, Zilla T, Dippold MA, Blagodatskaya E, Kuzyakov Y. Microbial C:N:P stoichiometry and turnover depend on nutrients availability in soil: A 14C, 15N and 33P triple labelling study. Soil Biol Biochem. 2019;131:206–16.

    CAS 
    Article 

    Google Scholar 

  • 27.

    Ma Q, Wu L, Wang J, Ma J, Zheng N, Hill PW, et al. Fertilizer regime changes the competitive uptake of organic nitrogen by wheat and soil microorganisms: An in-situ uptake test using 13C, 15N labelling, and 13C-PLFA analysis. Soil Biol Biochem. 2018;125:319–27.

    CAS 
    Article 

    Google Scholar 

  • 28.

    Jiang G, Zhang W, Xu M, Kuzyakov Y, Zhang X, Wang J, et al. Manure and Mineral Fertilizer Effects on Crop Yield and Soil Carbon Sequestration: a Meta‐Analysis and Modeling Across China. Glob Biogeochem Cy. 2018;32:1659–72.

    CAS 
    Article 

    Google Scholar 

  • 29.

    Liu S, Wang J, Pu S, Blagodatskaya E, Kuzyakov Y, Razavi BS. Impact of manure on soil biochemical properties: a global synthesis. Sci Total Environ. 2020;745:141003.

    CAS 
    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 30.

    Cheng L, Zhang N, Yuan M, Xiao J, Qin Y, Deng Y, et al. Warming enhances old organic carbon decomposition through altering functional microbial communities. ISME J. 2017;11:1825–35.

    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • 31.

    Ma Q, Wen Y, Wang D, Sun X, Hill PW, Macdonald A, et al. Farmyard manure applications stimulate soil carbon and nitrogen cycling by boosting microbial biomass rather than changing its community composition. Soil Biol Biochem. 2020;144:107760.

    CAS 
    Article 

    Google Scholar 

  • 32.

    Ma Q, Wen Y, Ma J, Macdonald A, Hill PW, Chadwick DR, et al. Long-term farmyard manure application affects soil organic phosphorus cycling: a combined metagenomic and 33P/14C labelling study. Soil Biol Biochem. 2020;149:107959.

    CAS 
    Article 

    Google Scholar 

  • 33.

    Jones DL, Hill PW, Smith AR, Farrell M, Ge T, Banning NC, et al. Role of substrate supply on microbial carbon use efficiency and its role in interpreting soil microbial community-level physiological profiles (CLPP). Soil Biol Biochem. 2018;123:1–6.

    CAS 
    Article 

    Google Scholar 

  • 34.

    Jones DL, Magthab EA, Gleeson DB, Hill PW, Sánchez-Rodríguez AR, Roberts P, et al. Microbial competition for nitrogen and carbon is as intense in the subsoil as in the topsoil. Soil Biol Biochem. 2018;117:72–82.

    CAS 
    Article 

    Google Scholar 

  • 35.

    Mariano E, Jones DL, Hill PW, Trivelin PCO. Mineralisation and sorption of dissolved organic nitrogen compounds in litter and soil from sugarcane fields. Soil Biol Biochem. 2016;103:522–32.

    CAS 
    Article 

    Google Scholar 

  • 36.

    Corre M, Brumme R, Veldkamp EF. Changes in nitrogen cycling and retention processes in soils under spruce forests along a nitrogen enrichment gradient in Germany. Glob Change Biol. 2010;13:1509–27.

    Article 

    Google Scholar 

  • 37.

    Spohn M, Kuzyakov Y. Phosphorus mineralization can be driven by microbial need for carbon. Soil Biol Biochem. 2013;61:69–75.

    CAS 
    Article 

    Google Scholar 

  • 38.

    Wu J, Joergensen RG, Pommerening B, Chaussod R, Brookes PC. Measurement of soil microbial biomass C by fumigation-extraction—an automated procedure. Soil Biol Biochem. 1990;22:1167–9.

    CAS 
    Article 

    Google Scholar 

  • 39.

    Glanville H, Hill PW, Schnepf A, Oburger E, Jones DL. Combined use of empirical data and mathematical modelling to better estimate the microbial turnover of isotopically labelled carbon substrates in soil. Soil Biol Biochem. 2015;94:154–68.

    Article 
    CAS 

    Google Scholar 

  • 40.

    Greenfield LM, Hill PW, Paterson E, Baggs EM, Jones DL. Methodological bias associated with soluble protein recovery from soil. Sci Rep-UK. 2018;8:11186.

    Article 
    CAS 

    Google Scholar 

  • 41.

    Näsholm T, Kielland K, Ganeteg U. Uptake of organic nitrogen by plants. N Phytol. 2010;182:31–48.

    Article 
    CAS 

    Google Scholar 

  • 42.

    Farrell M, Prendergast-Miller M, Jones DL, Hill PW, Condron LM. Soil microbial organic nitrogen uptake is regulated by carbon availability. Soil Biol Biochem. 2014;77:261–7.

    CAS 
    Article 

    Google Scholar 

  • 43.

    Niknahad-Gharmakher H, Piutti S, Machet JM, Benizri E, Recous S. Mineralization-immobilization of sulphur in a soil during decomposition of plant residues of varied chemical composition and S content. Plant Soil. 2012;360:391–404.

    CAS 
    Article 

    Google Scholar 

  • 44.

    Vong PC, Piutti S, Slezackdeschaumes S, Benizri E, Guckert A. Effects of low-molecular-weight organic compounds on sulphur immobilization and re-mineralization and extraction of immobilized sulphur by hot-water and acid hydrolysis. Eur J Soil Sci. 2010;61:287–97.

    CAS 
    Article 

    Google Scholar 

  • 45.

    Takriti M, Wild B, Schnecker J, Mooshammer M, Knoltsch A, Lashchinskiy N, et al. Soil organic matter quality exerts a stronger control than stoichiometry on microbial substrate use efficiency along a latitudinal transect. Soil Biol Biochem. 2018;121:212–20.

    CAS 
    Article 

    Google Scholar 

  • 46.

    Zhu Z, Ge T, Luo Y, Liu S, Xu X, Tong C, et al. Microbial stoichiometric flexibility regulates rice straw mineralization and its priming effect in paddy soil. Soil Biol Biochem. 2018;121:67–76.

    CAS 
    Article 

    Google Scholar 

  • 47.

    Xu X, Hui D, King AW, Song X, Thornton PE, Zhang L. Convergence of microbial assimilations of soil carbon, nitrogen, phosphorus and sulfur in terrestrial ecosystems. Sci Rep-UK. 2015;5:17445.

    CAS 
    Article 

    Google Scholar 

  • 48.

    Fanin N, Fromin N, Buatois B, Ttenschwiler SH. An experimental test of the hypothesis of non-homeostatic consumer stoichiometry in a plant litter-microbe system. Ecol Lett. 2013;16:764–72.

    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 49.

    Peters MK, Hemp A, Appelhans T, Becker JN, Behler C, Classen A, et al. Climate–land-use interactions shape tropical mountain biodiversity and ecosystem functions. Nature. 2019;568:88–92.

    CAS 
    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 50.

    Kaiser C, Franklin O, Dieckmann U, Richter A. Microbial community dynamics alleviate stoichiometric constraints during litter decay. Ecol Lett. 2014;17:680–90.

    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • 51.

    Xu X, Schimel JP, Thornton PE, Song X, Yuan F, Goswami S. Substrate and environmental controls on microbial assimilation of soil organic carbon: a framework for Earth system models. Ecol Lett. 2014;17:547–55.

    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 52.

    Apostel C, Dippold M, Kuzyakov Y. Biochemistry of hexose and pentose transformations in soil analyzed by position-specific labeling and 13C-PLFA. Soil Biol Biochem. 2015;80:199–208.

    CAS 
    Article 

    Google Scholar 

  • 53.

    Manzoni S, Taylor P, Richter A, Porporato A, Ågren GI. Environmental and stoichiometric controls on microbial carbon‐use efficiency in soils. N Phytol. 2012;196:79–91.

    CAS 
    Article 

    Google Scholar 

  • 54.

    Fitzgerald JW, Hale DD, Swank WT. Sulphur-containing amino acid metabolism in surface horizons of a hardwood forest. Soil Biol Biochem. 1988;20:825–31.

    CAS 
    Article 

    Google Scholar 

  • 55.

    Akashi H, Gojobori T. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. P Natl Acad Sci USA. 2002;99:3695–700.

    CAS 
    Article 

    Google Scholar 

  • 56.

    Nozaki T, Ali V, Tokoro M. Sulfur-Containing Amino Acid Metabolism in Parasitic Protozoa. Adv Parasit. 2005;60:1–99.

    Article 

    Google Scholar 

  • 57.

    Takagi H, Ohtsu I. l-Cysteine Metabolism and Fermentation in Microorganisms. Adv Biochem Eng Biotechnol. 2016;159:129–51.

    Google Scholar 

  • 58.

    Bustos I, Miguel AM, Fouad A, Carmen P, Teresa R, CM M. Volatile sulphur compounds-forming abilities of lactic acid bacteria: C-S lyase activities. Int J Food Microbiol. 2011;148:121–7.

    CAS 
    PubMed 
    Article 
    PubMed Central 

    Google Scholar 

  • 59.

    Assefa MK, Tucher SV, Schmidhalter U. Soil sulfur availability due to mineralization: soil amended with biogas residues. J Soil Sci Enviro Manag. 2014;5:13–9.

    CAS 
    Article 

    Google Scholar 


  • Source: Ecology - nature.com

    Analytics platform for coastal desalination plants wins 2021 Water Innovation Prize

    Supplementation of Lactobacillus early in life alters attention bias to threat in piglets