2012 Recreational Water Quality Criteria. (U. S. Environmental Protection Agency, 2012).
Lee, C. M. et al. Persistence of fecal indicator bacteria in Santa Monica Bay beach sediments. Water Res. 40, 2593–2602 (2006).
Google Scholar
Luo, C. et al. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc. Natl. Acad. Sci. 108, 7200–7205 (2011).
Google Scholar
Ishii, S., Ksoll, W. B., Hicks, R. E. & Sadowsky, M. J. Presence and growth of naturalized Escherichia coli in temperate soils from lake superior watersheds. Appl. Environ. Microbiol. 72, 612–621 (2006).
Google Scholar
Rochelle-Newall, E., Nguyen, T. M. H., Le, T. P. Q., Sengtaheuanghoung, O. & Ribolzi, O. A short review of fecal indicator bacteria in tropical aquatic ecosystems: Knowledge gaps and future directions. Front. Microbiol. 6, 1–15 (2015).
Google Scholar
Tymensen, L. D. et al. Comparative accessory gene fingerprinting of surface water Escherichia coli reveals genetically diverse naturalized population. J. Appl. Microbiol. 119, 263–277 (2015).
Google Scholar
Ishii, S. & Sadowsky, M. J. Escherichia coli in the environment: Implications for water quality and human health. Microbes and environments / JSME 23, 101–108 (2008).
Google Scholar
Surbeck, C. Q., Jiang, S. C. & Grant, S. B. Ecological control of fecal indicator bacteria in an urban stream. Environ. Sci. Technol. 44, 631–637 (2010).
Google Scholar
Jang, J. et al. Environmental Escherichia coli: Ecology and public health implications—A review. J. Appl. Microbiol. 123(3), 570–581. https://doi.org/10.1111/jam.13468 (2017).
Google Scholar
Van Elsas, J. D., Semenov, A. V., Costa, R. & Trevors, J. T. Survival of Escherichia coli in the environment: Fundamental and public health aspects. ISME J. 5, 173–183 (2010).
Google Scholar
Jaureguy, F. et al. Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics 9, 560 (2008).
Google Scholar
Clermont, O. et al. Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential. Environ. Microbiol. 21, 3107–3117 (2019).
Google Scholar
Clermont, O., Christenson, J. K., Denamur, E. & Gordon, D. M. The Clermont Escherichia coli phylo-typing method revisited: Improvement of specificity and detection of new phylo-groups. Environ. Microbiol. Rep. https://doi.org/10.1111/1758-2229.12019 (2012).
Google Scholar
Ratajczak, M. et al. Influence of hydrological conditions on the Escherichia coli population structure in the water of a creek on a rural watershed. BMC Microbiol. 10, 1–10 (2010).
Google Scholar
Johnson, J. R. et al. Phylogenetic backgrounds and virulence associated traits of Escherichia coli isolates from surface waters and diverse animals in Minnesota and Wisconsin. Appl. Environ. Microbiol. 83, 1–33 (2017).
Google Scholar
Petit, F. et al. Change in the structure of Escherichia coli population and the pattern of virulence genes along a rural aquatic continuum. Front. Microbiol. 8, 1–14 (2017).
Google Scholar
Kraft, N. J. B. et al. Community assembly, coexistence and the environmental filtering metaphor. Funct. Ecol. 29, 592–599 (2015).
Google Scholar
Berthe, T., Ratajczak, M., Clermont, O., Denamur, E. & Petit, F. Evidence for coexistence of distinct Escherichia coli populations in various aquatic environments and their survival in estuary water. Appl. Environ. Microbiol. 79, 4684–4693 (2013).
Google Scholar
Méric, G., Kemsley, E. K., Falush, D., Saggers, E. J. & Lucchini, S. Phylogenetic distribution of traits associated with plant colonization in Escherichia coli. Environ. Microbiol. 15, 487–501 (2013).
Google Scholar
Walk, S. T. The “Cryptic” Escherichia. EcoSal Plus 6, 2 (2015).
Ingle, D. J. et al. Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp. Appl. Environ. Microbiol. 77, 2695–2700 (2011).
Google Scholar
Elmqvist, T. The Urban Planet: Knowledge Towards Sustainable Cities (Cambridge University Press, 2018).
Google Scholar
Hosen, J. D., Febria, C. M., Crump, B. C. & Palmer, M. A. Watershed urbanization linked to differences in stream bacterial community composition. Front. Microbiol. 8, 1–17 (2017).
Google Scholar
Wang, S.-Y., Sudduth, E. B., Wallenstein, M. D., Wright, J. P. & Bernhardt, E. S. Watershed urbanization alters the composition and function of stream bacterial communities. PLoS ONE 6, e22972 (2011).
Google Scholar
Bernhardt, E. S., Band, L. E., Walsh, C. J. & Berke, P. E. Understanding, managing, and minimizing urban impacts on surface water nitrogen loading. Ann. N. Y. Acad. Sci. 1134, 61–96 (2008).
Google Scholar
Hosen, J. D., McDonough, O. T., Febria, C. M. & Palmer, M. A. Dissolved organic matter quality and bioavailability changes across an urbanization gradient in headwater streams. Environ. Sci. Technol. 48, 7817–7824 (2014).
Google Scholar
Hatt, B. E., Fletcher, T. D., Walsh, C. J. & Taylor, S. L. The influence of urban density and drainage infrastructure on the concentrations and loads of pollutants in small streams. Environ. Manage. 34, 112–124 (2004).
Google Scholar
Smith, R. M., Kaushal, S. S., Beaulieu, J. J., Pennino, M. J. & Welty, C. Influence of infrastructure on water quality and greenhouse gas dynamics in urban streams. Biogeosciences 14, 2831–2849 (2017).
Google Scholar
Handler, N. B., Paytan, A., Higgins, C. P., Luthy, R. G. & Boehm, A. B. Human development is linked to multiple water body impairments along the California coast. Estuar. Coasts 29, 860–870 (2006).
Google Scholar
Ishii, S. et al. Factors controlling long-term survival and growth of naturalized Escherichia coli populations in temperate field soils. Microbes Environ. 25, 8–14 (2010).
Google Scholar
Whitman, R. L. et al. Microbes in beach sands: Integrating environment, ecology and public health. Rev. Environ. Sci. Biotechnol. 13, 329–368 (2014).
Google Scholar
Kleinheinz, G. et al. Effect of aquatic macrophytes on the survival of Escherichia coli in a laboratory microcosm. Lake Reserv. Manage. 25, 149–154 (2009).
Google Scholar
Moreira, S. et al. Persistence of Escherichia coli in freshwater periphyton: Biofilm-forming capacity as a selective advantage. FEMS Microbiol. Ecol. 79, 608–618 (2012).
Google Scholar
Pachepsky, Y. A. & Shelton, D. R. Escherichia coli and fecal coliforms in freshwater and estuarine sediments. Crit. Rev. Environ. Sci. Technol. 41, 1067–1110 (2011).
Google Scholar
Walsh, C. J. & Kunapo, J. The importance of upland flow paths in determining urban effects on stream ecosystems. J. N. Am. Benthol. Soc. 28, 977–990 (2009).
Google Scholar
McLellan, S. L., Fisher, J. C. & Newton, R. J. The microbiome of urban waters. Int. Microbiol. 18, 141–149 (2015).
Google Scholar
Newton, R. J. et al. Sewage reflects the microbiomes of human populations. MBio 6, 1–9 (2015).
Google Scholar
Richards, S., Paterson, E., Withers, P. J. A. & Stutter, M. Septic tank discharges as multi-pollutant hotspots in catchments. Sci. Total Environ. 542, 854–863 (2016).
Google Scholar
Sowah, R. A., Habteselassie, M. Y., Radcliffe, D. E., Bauske, E. & Risse, M. Isolating the impact of septic systems on fecal pollution in streams of suburban watersheds in Georgia, United States. Water Res. 108, 330–338 (2017).
Google Scholar
Ly, D. K. & Chui, T. F. M. Modeling sewage leakage to surrounding groundwater and stormwater drains. Water Sci. Technol. 66, 2659–2665 (2012).
Google Scholar
Graziano, M., Giorgi, A. & Feijoó, C. Science of the Total Environment Multiple stressors and social-ecological traps in Pampean streams (Argentina): A conceptual model. Sci. Total Environ. 765, 142785 (2020).
Google Scholar
Graziano, M. et al. Fostering urban transformations in Latin America: Lessons around the ecological management of an urban stream in coproduction with a social movement (Buenos Aires, Argentina). Ecol. Soc. 24, 13 (2019).
Google Scholar
Cirelli, A. F. & Ojeda, C. Wastewater management in Greater Buenos Aires, Argentina. Desalination 218, 52–61 (2008).
Google Scholar
Elordi, M. L., Lerner, J. E. C. & Porta, A. Evaluación del impacto antrópico sobre la calidad del agua del arroyo Las Piedras, Quilmes, Buenos Aires, Argentina. Acta Bioquimica Clinica Latinoamericana 50, 669–677 (2016).
Censo nacional de población, hogares y viviendas 2010 : censo del Bicentenario : resultados definitivos, Serie B nº 2. (Instituto Nacional de Estadística y Censos, 2012).
Gordon, N. D., McMahon, T. A., Finlayson, B. L., Gippel, C. J. & Nathan, R. J. Stream Hydrology: An Introduction for Ecologists (Wiley, 2004).
Elosegui, A., Sabater, S. (eds.). Conceptos y técnicas en ecología fluvial. 243-251. (Fundación BBVa, 2009)
Baird, R. B., Eaton, A. D., Rice, E. W., & Bridgewater, L. (eds.)Standard methods for the examination of water and wastewater, 23. (American Public Health Association, 2017).
Clermont, O., Bonacorsi, S., Bingen, E. & Bonacorsi, P. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66, 4555–4558 (2000).
Google Scholar
Clermont, O., Gordon, D. M., Brisse, S., Walk, S. T. & Denamur, E. Characterization of the cryptic Escherichia lineages: Rapid identification and prevalence. Environ. Microbiol. 13, 2468–2477 (2011).
Google Scholar
Lescat, M. et al. Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure. Environ. Microbiol. Rep. 5, 9–57 (2013).
Google Scholar
Clermont, O. et al. Evidence for a human-specific Escherichia coli clone. Environ. Microbiol. 10, 1000–1006 (2008).
Google Scholar
Congedo, L. Semi-automatic classification plugin for QGIS. Sapienza Univ, 1-25 (2013).
Blanchet, F. G., Legendre, P. & Borcard, D. Forward selection of explanatory variables. Ecology 89, 2623–2632 (2008).
Google Scholar
Borcard, D., Gillet, F. & Lengendre, P. Numerical Ecology with R (Springer, 2018).
Google Scholar
Legendre, P., Borcard, D. & Roberts, D. W. Variation partitioning involving orthogonal spatial eigenfunction submodels. Ecology 93, 1234–1240 (2012).
Google Scholar
Bivand, R. S. & Wong, D. W. S. Comparing implementations of global and local indicators of spatial association. TEST 27, 716–748 (2018).
Google Scholar
Magurran, A. E. Measuring Biological Diversity (Wiley, Hoboken, 2004).
Oksanen, J. et al. Vegan: Ecological Diversity. R Project, 368. http://cran.r-project.org (2013)
Wilkinson, L. & Friendly, M. History corner the history of the cluster heat map. Am. Stat. 63, 179–184 (2009).
Google Scholar
Wei, T. et al. Visualization of a correlation matrix. Statistician 56, 316–324 (2017).
Robinaugh, D. J., Millner, A. J. & McNally, R. J. Identifying highly influential nodes in the complicated grief network. J. Abnormal Psychol. 125(6), 747 (2016).
Google Scholar
Peres-Neto, P. R., Legendre, P. L., Dray, S. & Borcard, D. Variation partitioning of species data matrices: Estimation and comparison of fractions. Ecology 87, 2614–2625 (2006).
Google Scholar
Legendre, P. & Gallagher, E. D. Ecologically meaningful transformations for ordination of species data. Oecologia 129, 271–280 (2001).
Google Scholar
Lepš, J. & Šmilauer, P. Multivariate Analysis of Ecological Data Using CANOCO (Cambridge University Press, Cambridge, 2003).
Google Scholar
Simpson, G. Restricted permutations; using the permute package. http://cran.r-project.org (2012).
Booth, D. B., Roy, A. H., Smith, B. & Capps, K. A. Global perspectives on the urban stream syndrome. Freshw. Sci. 35, 412–420 (2016).
Google Scholar
Peipoch, M., Brauns, M., Hauer, F. R., Weitere, M. & Valett, H. M. Ecological simplification: Human influences on Riverscape complexity. Bioscience 65, 1057–1065 (2015).
Google Scholar
Stoppe, N. D. C. et al. Worldwide phylogenetic group patterns of Escherichia coli from commensal human and wastewater treatment plant isolates. Front. Microbiol. 8, 2512 (2017).
Google Scholar
Escobar-Páramo, P. et al. Large-scale population structure of human commensal Escherichia coli isolates. Appl. Environ. Microbiol. 70, 5698–5700 (2004).
Google Scholar
Walk, S. T., Alm, E. W., Calhoun, L. M., Mladonicky, J. M. & Whittam, T. S. Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. Environ. Microbiol. 9, 2274–2288 (2007).
Google Scholar
Touchon, M. et al. Phylogenetic background and habitat drive the genetic diversification of Escherichia coli. PLoS Genet. 16, e1008866 (2020).
Google Scholar
R Core Team. R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, 2019).
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