Alvares, F. et al. Old Wolrd Canis spp. with taxonomic ambiguity: Workshop conclusions and recommendations Vairao, Portugal, 28th–30th May 2019. Canid News (Online Edition) (2019).
Jackson, S. M. et al. Taxonomy of the dingo: It’s an ancient dog. Aust. Zool. 41, 347–357 (2021).
Stephens, D., Wilton, A. N., Fleming, P. J. S. & Berry, O. Death by sex in an Australian icon: A continent-wide survey reveals extensive hybridization between dingoes and domestic dogs. Mol. Ecol. 24, 5643–5656 (2015).
Google Scholar
Cairns, K. M., Shannon, L. M., Koler-Matznick, J., Ballard, J. W. O. & Boyko, A. R. Elucidating biogeographical patterns in Australian native canids using genome wide SNPs. PLoS ONE 13, e0198754 (2018).
Google Scholar
Fleming, P. J. S., Ballard, G. & Cutter, N. There is no Dingo dilemma: legislation facilitates culling, containment and conservation of Dingoes in New South Wales. Aust. Zool. 41, 408–416 (2021).
Corbett, L. K. The Dingo in Australia and Asia. Second edn, (JB Books Australia, 2001).
Newsome, T. M. et al. Making a new dog?. Bioscience 67, 374–381 (2017).
Wang, G.-D. et al. Out of southern East Asia: the natural history of domestic dogs across the world. Cell Res. 26, 21–33 (2016).
Google Scholar
Smith, B. The Dingo Debate: Origins, Behaviour and Conservation. (CSIRO Publishing, 2015).
Jackson, S. M. et al. The dogma of dingoes-taxonomic status of the dingo: A reply to Smith et al. Zootaxa 4564, 198–212 (2019).
Zhang, S. J. et al. Genomic regions under selection in the feralization of the dingoes. Nat. Commun. 11, 671 (2020).
Google Scholar
Balme, J. & O’Connor, S. Dingoes and Aboriginal social organization in Holocene Australia. J. Archaeol. Sci. Rep. 7, 775–781 (2016).
Cairns, K. M. What is a dingo – origins, hybridisation and identity. Aust. Zool. 41(3), 322–337 (2021).
Allen, B. L. & West, P. Influence of dingoes on sheep distribution in Australia. Aust. Vet. J. 91, 261–267 (2013).
Google Scholar
Fleming, P. J. S. in Carnivores of Australia: Past, Present and Future (eds A.S. Glen & C.R. Dickman) Ch. 6, 105–149 (CSIRO Publishing, 2014).
Stephens, D. The molecular ecology of Australian wild dogs: hybridisation, gene flow and genetic structure at multiple geographic scales, The University of Western Australia, (2011).
Cairns, K. M., Nesbitt, B. J., Laffan, S. W., Letnic, M. & Crowther, M. S. Geographic hot spots of dingo genetic ancestry in southeastern Australia despite hybridisation with domestic dogs. Conserv. Genet. 21, 77–90 (2020).
Google Scholar
Wilton, A. N., Steward, D. J. & Zafiris, K. Microsatellite variation in the Australian dingo. J. Hered. 90, 108–111 (1999).
Google Scholar
Allendorf, F. W., Leary, R. F., Spruell, P. & Wenburg, J. K. The problems with hybrids: Setting conservation guidelines. Trends Ecol. Evol. 16, 613–622 (2001).
Atkinson, J. An account of the state of agriculture & grazing in New South Wales. (J. Cross, 1826).
Massy, C. The Australian Merino: The Story of a Nation (Revised and updated). xxii,1262 (Random House Australia, 2007).
Cairns, K. M., Brown, S. K., Sacks, B. N. & Ballard, J. W. O. Conservation implications for dingoes from the maternal and paternal genome: Multiple populations, dog introgression, and demography. Ecol. Evol. 7, 9787–9807 (2017).
Google Scholar
Kopelman, N. M., Mayzel, J., Jakobsson, M., Rosenberg, N. A. & Mayrose, I. Clumpak: A program for identifying clustering modes and packaging population structure inferences across K. Mol. Ecol. Resour. 15, 1179–1191 (2015).
Google Scholar
Driscoll, C., Yamaguchi, N., O’Brien, S. J. & Macdonald, D. W. A suite of genetic markers useful in assessing wildcat (Felis silvestris ssp.)-domestic cat (Felis silvestris catus) admixture. J. Hered. 102(1), S87–S90 (2011).
Google Scholar
Bohling, J. H. & Waits, L. P. Factors influencing red wolf–coyote hybridization in eastern North Carolina USA. Biol. Conserv. 184, 108–116 (2015).
Fleming, P., Corbett, L., Harden, R. & Thomson, P. in Managing the Impacts of Dingoes and Other Wild Dogs. (Bureau of Rural Sciences, Canberra, 2001).
Van Veldhuisen, R. Pipe dreams: A history of water supply in the Wimmera-Mallee (Wimmera Mallee Water, 2001).
Newsome, A. The distribution of red kangaroos, Megaleia rufa (Desmarest), about sources of persistent food and water in central Australia. Aust. J. Zool. 13, 289–300 (1965).
James, C. D., Landsberg, J. & Morton, S. R. Provision of watering points in the Australian arid zone: A review of effects on biota. J. Arid Environ. 41, 87–121 (1999).
Google Scholar
Robinson, J. A., Brown, C., Kim, B. Y., Lohmueller, K. E. & Wayne, R. K. Purging of strongly deleterious mutations explains long-term persistence and absence of inbreeding depression in island foxes. Curr. Biol. 28, 3487-3494.e3484 (2018).
Google Scholar
Benazzo, A. et al. Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers. PNAS 114, E9589–E9597 (2017).
Google Scholar
Mattucci, F. et al. Genomic approaches to identify hybrids and estimate admixture times in European wildcat populations. Sci. Rep. 9, 11612 (2019).
Google Scholar
Thomson, P. C., Rose, K. & Kok, N. E. The behavioural ecology of dingoes in north-western Australia. VI. Temporary extra-terrestrial movements and dispersal. Wildl. Res. 19, 585–595 (1992).
Newsome, T. M., Ballard, G.-A., Dickman, C. R., Fleming, P. J. S. & van de Ven, R. Home range, activity and sociality of a top predator, the dingo: A test of the Resource Dispersion Hypothesis. Ecography 36, 914–925 (2013).
Giglio, R. M., Rocke, T. E., Osorio, J. E. & Latch, E. K. Characterizing patterns of genomic variation in the threatened Utah prairie dog: Implications for conservation and management. Evol. Appl. 14, 1036–1051 (2021).
Google Scholar
Conroy, G. C. et al. Conservation concerns associated with low genetic diversity for K’gari–Fraser Island dingoes. Sci. Rep. 11, 9503 (2021).
Google Scholar
Frankham, R. Do island populations have less genetic variation than mainland populations?. Heredity 78, 311–327 (1997).
Google Scholar
Funk, W. C. et al. Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis). Mol. Ecol. 25, 2176–2194 (2016).
Google Scholar
Behrendorff, L. Best-practice dingo management: six lessons from K’gari (Fraser Island). Aust. Zool. 41, 521–533 (2021).
van Eeden, L. M., Smith, B. P., Crowther, M. S., Dickman, C. R. & Newsome, T. M. ‘The dingo menace’: An historic survey on graziers’ management of an Australian carnivore. Pac. Conserv. Biol. 25, 245–256 (2019).
Whiting, S. D., Long, J. L., Hadden, K. M., Lauder, A. D. K. & Koch, A. U. Insights into size, seasonality and biology of a nesting population of the Olive Ridley turtle in northern Australia. Wildl. Res. 34, 200–210 (2007).
Banks, S. C., Hoyle, S. D., Horsup, A., Sunnucks, P. & Taylor, A. C. Demographic monitoring of an entire species (the northern hairy-nosed wombat, Lasiorhinus krefftii) by genetic analysis of non-invasively collected material. Anim. Conserv. 6, 101–107 (2003).
Parker, H. G. et al. Genomic analyses reveal the influence of geographic origin, migration, and hybridization on modern dog breed development. Cell Rep. 19, 697–708 (2017).
Google Scholar
Thackway, R. & Cresswell, I. An Interim Biogeographic Regionalisation for Australia: A Framework for Setting Priorities in the National Reserves System Cooperative Program. Version 4, (Australian Nature Conservation Agency, Reserve Systems Unit, 1995).
Bureau of Meteorology & CSIRO. (Bureau of Meteorology, CSIRO and Farmlink, http://www.bom.gov.au/climate/climate-guides/guides/01-Mallee-VIC-Climate-Guide.pdf, 2019).
Rowan, J. N. & Downes, R. G. in Soil Conservation Authority of Victoria (ed Brookes, A.C.) 1–55 (Govt. Printer, Melbourne, 1963).
Longmire, J. L., Maltbie, M. & Baker, R. J. Use of “lysis buffer” in DNA isolation and its implications for museum collections. Occas. Pap. Mus. Tex. Tech. Univ. 163, 1–3 (1997).
Tatler, J., Prowse, T. A. A., Roshier, D. A., Cairns, K. M. & Cassey, P. Phenotypic variation and promiscuity in a wild population of pure dingoes (Canis dingo). J. Zool. Syst. Evol. Res. 59, 311–322 (2020).
Pritchard, J. K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000).
Google Scholar
Francis, R. M. pophelper: An R package and web app to analyse and visualize population structure. Mol. Ecol. Resour. 17, 27–32 (2017).
Google Scholar
Wang, J. The computer program structure for assigning individuals to populations: Easy to use but easier to misuse. Mol. Ecol. Resour. 17, 981–990 (2017).
Google Scholar
Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software structure: A simulation study. Mol. Ecol. 14, 2611–2620 (2005).
Google Scholar
Earl, D. A. & von Holdt, B. M. Structure harvester: A website and program for visualizing structure output and implementing the Evanno method. Conserv. Genet. Resour. 4, 359–361 (2012).
Verity, R. & Nichols, R. A. Estimating the number of subpopulations (K) in structured populations. Genetics 203, 1827–1839 (2016).
Google Scholar
Jombart, T. adegenet: A R package for the multivariate analysis of genetic markers. Bioinformatics 24, 1403–1405 (2008).
Google Scholar
Jombart, T., Devillard, S. & Balloux, F. Discriminant analysis of principal components: A new method for the analysis of genetically structured populations. BMC Genet. 11, 94 (2010).
Google Scholar
Keenan, K. et al. diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors. Methods Ecol. Evol. 4, 782–788 (2013).
Peakall, R. & Smouse, P. E. genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6, 288–295 (2006).
Peakall, R. & Smouse, P. E. GenAlEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research—an update. Bioinformatics 28, 2537–2539 (2012).
Google Scholar
Lynch, M. & Ritland, K. Estimation of pairwise relatedness with molecular markers. Genetics 152, 1753–1766 (1999).
Google Scholar
Weir, B. S. & Cockerham, C. C. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358–1370 (1984).
Google Scholar
Jost, L. GST and its relatives do not measure differentiation. Mol. Ecol. 17, 4015–4026 (2008).
Google Scholar
Do, C. et al. NeEstimator v2: Re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Mol. Ecol. Resour. 14, 209–214 (2014).
Google Scholar
Shirk, A. J. & Cushman, S. A. sGD: Software for estimating spatially explicit indices of genetic diversity. Mol. Ecol. Resour. 11, 922–934 (2011).
Google Scholar
Schnute, J., Boers, N., Haigh, R. & Couture-Beil, A. Introduction to PBSmapping. (2016).
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