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Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by Citrobacter rodentium

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  • Woodward SE, Krekhno Z, Finlay BB. Here, There, and Everywhere: How Pathogenic Escherichia coli Sense and Respond to Gastrointestinal Biogeography. Cell Microbiol. 2019;21:e13107.

    CAS 
    Article 

    Google Scholar 

  • Collins JW, Keeney KM, Crepin VF, Rathinam VAK, Fitzgerald KA, Finlay BB, et al. Citrobacter rodentium: Infection, Inflammation and the Microbiota. Nat Rev Microbiol. 2014;12:612–23.

    CAS 
    Article 

    Google Scholar 

  • Mowat AM, Agace WW. Regional Specialization Within the Intestinal Immune System. Nat Rev Immunol. 2014;14:nri3738.

    Article 

    Google Scholar 

  • Population Dynamics – Latest Research and News | Nature [Internet]. [cited 2017 Nov 5]. Available from: https://www.nature.com/subjects/population-dynamics

  • Abel S, Abel zur Wiesch P, Davis BM, Waldor MK. Analysis of Bottlenecks in Experimental Models of Infection. PLoS Pathog. 2015;11:e1004823.

  • Global Burden of Disease Study. 2013 Collaborators. Global, Regional, and National Incidence, Prevalence, and Years Lived with Disability for 301 Acute and Chronic Diseases and Injuries in 188 Countries, 1990-2013: A Systematic Analysis for the Global Burden of Disease Study 2013. Lancet Lond Engl 2015;386:743–800.

    Article 

    Google Scholar 

  • WHO | Diarrhoeal Disease [Internet]. WHO. [cited 2017 Oct 22]. Available from: http://www.who.int/mediacentre/factsheets/fs330/en/.

  • Crepin VF, Collins JW, Habibzay M, Frankel G. Citrobacter rodentium Mouse Model of Bacterial Infection. Nat Protoc. 2016;11:1851–76.

    CAS 
    Article 

    Google Scholar 

  • Bhinder G, Sham HP, Chan JM, Morampudi V, Jacobson K, Vallance BA. The Citrobacter rodentium Mouse Model: Studying Pathogen and Host Contributions to Infectious Colitis. J Vis Exp. 2013;19:e50222.

    Google Scholar 

  • Barthold SW, Coleman GL, Bhatt PN, Osbaldiston GW, Jonas AM. The Etiology of Transmissible Murine Colonic Hyperplasia. Lab Anim Sci. 1976;26:889–94.

    CAS 
    PubMed 

    Google Scholar 

  • Deng W, Vallance BA, Li Y, Puente JL, Finlay BB. Citrobacter rodentium Translocated Intimin Receptor (Tir) is an Essential Virulence Factor Needed for Actin Condensation, Intestinal Colonization and Colonic Hyperplasia in Mice. Mol Microbiol. 2003;48:95–115.

    CAS 
    Article 

    Google Scholar 

  • Schauer DB, Falkow S. Attaching and Effacing Locus of a Citrobacter freundii Biotype That Causes Transmissible Murine Colonic Hyperplasia. Infect Immun. 1993;61:2486–92.

    CAS 
    Article 

    Google Scholar 

  • Elliott SJ, Yu J, Kaper JB. The Cloned Locus of Enterocyte Effacement From Enterohemorrhagic Escherichia coli O157:H7 is Unable to Confer the Attaching and Effacing Phenotype Upon E. coli K-12. Infect Immun. 1999;67:4260–3.

    CAS 
    Article 

    Google Scholar 

  • Mellies JL, Elliott SJ, Sperandio V, Donnenberg MS, Kaper JB. The Per Regulon of Enteropathogenic Escherichia coli: Identification of a Regulatory Cascade and a Novel Transcriptional Activator, the Locus of Enterocyte Effacement (LEE)-Encoded Regulator (Ler). Mol Microbiol. 1999;33:296–306.

    CAS 
    Article 

    Google Scholar 

  • Jarvis KG, Girón JA, Jerse AE, McDaniel TK, Donnenberg MS, Kaper JB. Enteropathogenic Escherichia coli Contains a Putative Type III Secretion System Necessary for the Export of Proteins Involved in Attaching and Effacing Lesion Formation. Proc Natl Acad Sci. 1995;92:7996–8000.

    CAS 
    Article 

    Google Scholar 

  • Moon HW, Whipp SC, Argenzio RA, Levine MM, Giannella RA. Attaching and Effacing Activities of Rabbit and Human Enteropathogenic Escherichia coli in Pig and Rabbit Intestines. Infect Immun. 1983;41:1340–51.

    CAS 
    Article 

    Google Scholar 

  • Abel S, Abel zur Wiesch P, Chang HH, Davis BM, Lipsitch M, Waldor MK. Sequence Tag–based Analysis of Microbial Population Dynamics. Nat Methods. 2015;12:223–6.

    CAS 
    Article 

    Google Scholar 

  • Cavalli-Sforza LL, Edwards AW. Phylogenetic analysis. Models and Estimation Procedures. Am J Hum Genet. 1967;19:233–57. 3.

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Zhang T, Abel S, Abel Zur Wiesch P, Sasabe J, Davis BM, Higgins DE, et al. Deciphering the Landscape of Host Barriers to Listeria monocytogenes Infection. Proc Natl Acad Sci . 2017;114:6334–9.

    CAS 
    Article 

    Google Scholar 

  • Hullahalli K, Waldor MK. Pathogen Clonal Expansion Underlies Multiorgan Dissemination and Organ-Specific Outcomes During Murine Systemic Infection. eLife 2021;10:e70910.

    CAS 
    Article 

    Google Scholar 

  • Petty NK, Feltwell T, Pickard D, Clare S, Toribio AL, Fookes M, et al. Citrobacter rodentium is an Unstable Pathogen Showing Evidence of Significant Genomic Flux. PLOS Pathog. 2011;7:e1002018.

    CAS 
    Article 

    Google Scholar 

  • Yasutomi E, Hoshi N, Adachi S, Otsuka T, Kong L, Ku Y, et al. Proton Pump Inhibitors Increase the Susceptibility of Mice to Oral Infection with Enteropathogenic Bacteria. Dig Dis Sci. 2018;63:881–9.

    CAS 
    Article 

    Google Scholar 

  • Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. DADA2: High-Resolution Sample Inference From Illumina Amplicon Data. Nat Methods. 2016;13:581–3.

    CAS 
    Article 

    Google Scholar 

  • Krimbas CB, Tsakas S. The Genetics of Dacus Oleae. v. Changes of Esterase Polymorphism in a Natural Population Following Insecticide Control-Selection or Drift? Evol Int J Org Evol. 1971;25:454–60.

    Article 

    Google Scholar 

  • Peter BM, Slatkin M. Detecting Range Expansions From Genetic Data. Evol Int J Org Evol. 2013;67:3274–89.

    Article 

    Google Scholar 

  • Schwarz R, Kaspar A, Seelig J, Künnecke B. Gastrointestinal Transit Times in Mice and Humans Measured with 27Al and 19F Nuclear Magnetic Resonance. Magn Reson Med. 2002;48:255–61.

    Article 

    Google Scholar 

  • McMurdie PJ, Holmes S. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PloS One. 2013;8:e61217.

    CAS 
    Article 

    Google Scholar 

  • Petty NK, Bulgin R, Crepin VF, Cerdeño-Tárraga AM, Schroeder GN, Quail MA, et al. The Citrobacter rodentium Genome Sequence Reveals Convergent Evolution with Human Pathogenic Escherichia coli. J Bacteriol. 2010;192:525–38.

    CAS 
    Article 

    Google Scholar 

  • Mundy R, Pickard D, Wilson RK, Simmons CP, Dougan G, Frankel G. Identification of a Novel Type IV Pilus Gene Cluster Required for Gastrointestinal Colonization of Citrobacter rodentium. Mol Microbiol. 2003;48:795–809.

    CAS 
    Article 

    Google Scholar 

  • Darwin AJ, Miller VL. Identification of Yersinia enterocolitica Genes Affecting Survival in an Animal Host Using Signature-Tagged Transposon Mutagenesis. Mol Microbiol. 1999;32:51–62.

    CAS 
    Article 

    Google Scholar 

  • Maroncle N, Balestrino D, Rich C, Forestier C. Identification of Klebsiella pneumoniae Genes Involved in Intestinal Colonization and Adhesion Using Signature-Tagged Mutagenesis. Infect Immun. 2002;70:4729–34.

    CAS 
    Article 

    Google Scholar 

  • Wiles S, Dougan G, Frankel G. Emergence of a ‘Hyperinfectious’ Bacterial State After Passage of Citrobacter rodentium Through the Host Gastrointestinal Tract. Cell Microbiol. 2005;7:1163–72.

    CAS 
    Article 

    Google Scholar 

  • Wiles S, Clare S, Harker J, Huett A, Young D, Dougan G, et al. Organ Specificity, Colonization and Clearance Dynamics In Vivo Following Oral Challenges with the Murine Pathogen Citrobacter rodentium. Cell Microbiol. 2004;6:963–72.

    CAS 
    Article 

    Google Scholar 

  • Kitamoto S, Nagao-Kitamoto H, Kuffa P, Kamada N. Regulation of Virulence: The Rise and Fall of Gastrointestinal Pathogens. J Gastroenterol. 2016;51:195–205.

    Article 

    Google Scholar 

  • Takumi K, de Jonge R, Havelaar A. Modelling Inactivation of Escherichia coli by Low pH: Application to Passage Through the Stomach of Young and Elderly People. J Appl Microbiol. 2000;89:935–43.

    CAS 
    Article 

    Google Scholar 

  • Pienaar JA, Singh A, Barnard TG. Acid-Happy: Survival and Recovery of Enteropathogenic Escherichia coli (EPEC) in Simulated Gastric Fluid. Micro Pathog. 2019;128:396–404.

    CAS 
    Article 

    Google Scholar 

  • McConnell EL, Basit AW, Murdan S. Measurements of Rat and Mouse Gastrointestinal pH, Fluid and Lymphoid Tissue, and Implications for In-Vivo Experiments. J Pharm Pharm. 2008;60:63–70.

    CAS 
    Article 

    Google Scholar 

  • Tan A, Petty NK, Hocking D, Bennett-Wood V, Wakefield M, Praszkier J, et al. Evolutionary Adaptation of an AraC-Like Regulatory Protein in Citrobacter rodentium and Escherichia Species. Infect Immun. 2015;83:1384–95.

    CAS 
    Article 

    Google Scholar 

  • Sanchez KK, Chen GY, Schieber AMP, Redford SE, Shokhirev MN, Leblanc M, et al. Cooperative Metabolic Adaptations in the Host Can Favor Asymptomatic Infection and Select for Attenuated Virulence in an Enteric Pathogen. Cell 2018;175:146–.e15.

    CAS 
    Article 

    Google Scholar 

  • Cunningham R, Jones L, Enki DG, Tischhauser R. Proton Pump Inhibitor Use as a Risk Factor for Enterobacteriaceal Infection: A Case-Control Study. J Hosp Infect. 2018;100:60–4.

    CAS 
    Article 

    Google Scholar 

  • Kelly OB, Dillane C, Patchett SE, Harewood GC, Murray FE. The Inappropriate Prescription of Oral Proton Pump Inhibitors in the Hospital Setting: A Prospective Cross-Sectional Study. Dig Dis Sci. 2015;60:2280–6.

    CAS 
    Article 

    Google Scholar 

  • Federici S, Suez J, Elinav E. Our Microbiome: On the Challenges, Promises, and Hype. Results Probl Cell Differ. 2020;69:539–57.

    CAS 
    Article 

    Google Scholar 


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