Jaiswal, S. K., Msimbira, L. A. & Dakora, F. D. Phylogenetically diverse group of native bacterial symbionts isolated from root nodules of groundnut (Arachis hypogaea L.) in South Africa. Syst. Appl. Microbiol. 40, 215–226. https://doi.org/10.1016/j.syapm.2017.02.002 (2017).
Google Scholar
Tahir, M., Lv, Y., Gao, L., Hallett, P. D. & Peng, X. Soil water dynamics and availability for citrus and peanut along a hillslope at the Sunjia Red Soil Critical Zone Observatory (CZO). Soil Tillage Res. 163, 110–118. https://doi.org/10.1016/j.still.2016.05.017 (2016).
Google Scholar
Xiaogang, L. The composition of root exudates from two different resistant peanut cultivars and their effects on the growth of soil-borne pathogen. Int. J. Biol. Sci. https://doi.org/10.7150/ijbs.5579 (2013).
Google Scholar
Chen, M. et al. Dynamic succession of soil bacterial community during continuous cropping of peanut (Arachis hypogaea L.). PLoS ONE https://doi.org/10.1371/journal.pone.0101355 (2014).
Google Scholar
Huang, W. et al. Effects of continuous sugar beet cropping on rhizospheric microbial communities. Genes https://doi.org/10.3390/genes11010013 (2019).
Google Scholar
Wang, Y. et al. Effect of continuous cropping on the rhizosphere soil and growth of common buckwheat. Plant. Prod. Sci. 23, 81–90. https://doi.org/10.1080/1343943X.2019.1685895 (2020).
Google Scholar
Meng, L. B. et al. Changes in soil microbial diversity and control of Fusarium oxysporum in continuous cropping cucumber greenhouses following biofumigation. Emir. J. Food Agric. 30, 644–653. https://doi.org/10.9755/ejfa.2018.v30.i8.1752 (2018).
Google Scholar
Li, X., Ding, C., Zhang, T. & Wang, X. Fungal pathogen accumulation at the expense of plant-beneficial fungi as a consequence of consecutive peanut monoculturing. Soil Biol. Biochem. 72, 11–18. https://doi.org/10.1016/j.soilbio.2014.01.019 (2014).
Google Scholar
Wang, H. W. et al. Fungal endophyte Phomopsis liquidambari biodegrades soil resveratrol: A potential allelochemical in peanut monocropping systems. J. Sci. Food Agric. 99, 5899–5909. https://doi.org/10.1002/jsfa.9865 (2019).
Google Scholar
Huang, L. et al. Plant-soil feedbacks and soil sickness: From mechanisms to application in agriculture. J. Chem. Ecol. 39, 232–242. https://doi.org/10.1007/s10886-013-0244-9 (2013).
Google Scholar
Deng, J. J. et al. Autotoxicity of phthalate esters in tobacco root exudates: Effects on seed germination and seedling growth. Pedosphere 27, 1073–1082. https://doi.org/10.1016/s1002-0160(17)60374-6 (2017).
Google Scholar
Chen, S. L., Zhou, B. L., Lin, S. S., Li, X. & Ye, X. L. Accumulation of cinnamic acid and vanillin in eggplant root exudates and the relationship with continuous cropping obstacle. Afr. J. Biotechnol. 10, 2659–2665. https://doi.org/10.5897/AJB10.1338 (2011).
Google Scholar
Berendsen, R. L., Pieterse, C. M. J. & Bakker, P. A. H. M. The rhizosphere microbiome and plant health. Trends Plant Sci. 17, 478–486. https://doi.org/10.1016/j.tplants.2012.04.001 (2012).
Google Scholar
Wu, L. K. et al. Comparative metagenomic analysis of rhizosphere microbial community composition and functional potentials under Rehmannia glutinosa consecutive monoculture. Int. J. Mol. Sci. https://doi.org/10.3390/ijms19082394 (2018).
Google Scholar
Galazka, A., Gawryjolek, K., Perzynski, A., Galazka, R. & Ksiezak, J. Changes in enzymatic activities and microbial communities in soil under long-term maize monoculture and crop rotation. Pol. J. Environ. Stud. 26, 39–46. https://doi.org/10.15244/pjoes/64745 (2017).
Google Scholar
Wu, L. K. et al. Modification of rhizosphere bacterial community structure and functional potentials to control Pseudostellaria heterophylla replant disease. Plant Dis. 104, 25–34. https://doi.org/10.1094/pdis-04-19-0833-re (2020).
Google Scholar
Becker, J., Rodibaugh, K., Hahn, D. & Nowlin, W. Bacterial community composition and carbon metabolism in a subtropical riverscape. Hydrobiologia 792, 209–226. https://doi.org/10.1007/s10750-016-3058-2 (2017).
Google Scholar
Zheng, Q. et al. Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity. Soil Biol. Biochem. 136, 107521. https://doi.org/10.1016/j.soilbio.2019.107521 (2019).
Google Scholar
Berg, G. & Smalla, K. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol. Ecol. 68, 1–13. https://doi.org/10.1111/j.1574-6941.2009.00654.x (2009).
Google Scholar
Yang, D., Liu, Y., Wang, Y., Gao, F. & Li, X. Effects of soil tillage, management practices, and mulching film application on soil health and peanut yield in a continuous cropping system. Front. Microbiol. 11, 570924. https://doi.org/10.3389/fmicb.2020.570924 (2020).
Google Scholar
Li, J. et al. Variations of rhizospheric soil microbial communities in response to continuous Andrographis paniculata cropping practices. Bot. Stud. https://doi.org/10.1186/s40529-020-00295-1 (2020).
Google Scholar
Xiong, W. et al. Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease. Soil Biol. Biochem. 107, 198–207. https://doi.org/10.1016/j.soilbio.2017.01.010 (2017).
Google Scholar
Wu, L. et al. Barcoded pyrosequencing reveals a shift in the bacterial community in the rhizosphere and rhizoplane of Rehmannia glutinosa under consecutive monoculture. Int. J. Mol. Sci. 19, 850. https://doi.org/10.3390/ijms19030850 (2018).
Google Scholar
Zhao, Q. et al. Long-term coffee monoculture alters soil chemical properties and microbial communities. Sci. Rep. https://doi.org/10.1038/s41598-018-24537-2 (2018).
Google Scholar
Dong, L. et al. High-throughput sequencing technology reveals that continuous cropping of American ginseng results in changes in the microbial community in arable soil. Chin. Med. https://doi.org/10.1186/s13020-017-0139-8 (2017).
Google Scholar
Dong, L., Xu, J., Feng, G., Li, X. & Chen, S. Soil bacterial and fungal community dynamics in relation to Panax notoginseng death rate in a continuous cropping system. Sci. Rep. https://doi.org/10.1038/srep31802 (2016).
Google Scholar
Gao, Z. et al. Effects of continuous cropping of sweet potato on the fungal community structure in rhizospheric soil. Front. Microbiol. https://doi.org/10.3389/fmicb.2019.02269 (2019).
Google Scholar
Wu, L. et al. Effects of consecutive monoculture of Pseudostellaria heterophylla on soil fungal community as determined by pyrosequencing. Sci. Rep. 6, 26601. https://doi.org/10.1038/srep26601 (2016).
Google Scholar
Yao, Q. et al. Dynamics of soil properties and fungal community structure in continuous-cropped alfalfa fields in Northeast China. PeerJ 7, 7125. https://doi.org/10.7717/peerj.7127 (2019).
Google Scholar
Zhu, B., Wu, J., Ji, Q., Wu, W. & Qin, L. Diversity of rhizosphere and endophytic fungi in Atractylodes macrocephala during continuous cropping. PeerJ 8, e8905. https://doi.org/10.7717/peerj.8905 (2020).
Google Scholar
Janssen, P. H. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl. Environ. Microb. 72, 1719–1728 (2006).
Google Scholar
Mendes, R. et al. Deciphering the rhizosphere microbiome for disease-sppressive bacteria. Science https://doi.org/10.1126/science.1203980 (2011).
Google Scholar
Zhou, H. et al. Changes in the soil microbial communities of alpine steppe at Qinghai-Tibetan Plateau under different degradation levels. Sci. Total Environ. 651, 2281–2291. https://doi.org/10.1016/j.scitotenv.2018.09.336 (2019).
Google Scholar
Chen, J., Gong, J. L. & Xu, M. G. Implications of continuous and rotational cropping practices on soil bacterial communities in pineapple cultivation. Eur. J. Soil Biol. 97, 103172. https://doi.org/10.1016/j.ejsobi.2020.103172 (2020).
Google Scholar
Li, W., Liu, Q. & Chen, P. Effect of long-term continuous cropping of strawberry on soil bacterial community structure and diversity. J. Integr. Agr. 17, 206–218. https://doi.org/10.1016/S2095-3119(18)61944-6 (2018).
Google Scholar
Liu, X. et al. Microbial community diversities and taxa abundances in soils along a seven-year gradient of potato monoculture using high throughput pyrosequencing approach. PLoS ONE 9, e86610–e86610. https://doi.org/10.1371/journal.pone.0086610 (2014).
Google Scholar
Xiong, W. et al. The effect of long-term continuous cropping of black pepper on soil bacterial communities as determined by 454 pyrosequencing. PLoS ONE 10, e0136946. https://doi.org/10.1371/journal.pone.0136946 (2015).
Google Scholar
Tan, Y. et al. Diversity and composition of rhizospheric soil and root endogenous bacteria in Panax notoginseng during continuous cropping practices. J. Basic Microb. 57, 337. https://doi.org/10.1002/jobm.201600464 (2017).
Google Scholar
Fierer, N., Bradford, M. A. & Jackson, R. B. Toward an ecological classification of soil bacteria. Ecology 88, 1354–1364. https://doi.org/10.1890/05-1839 (2007).
Google Scholar
Yang, Y. et al. Effects of microbiological fertilizer on rhizosphere soil fungus communities under long-term continuous cropping of protected Hami melon. Chin. J. App. Environ. Biol. https://doi.org/10.19675/j.cnki.1006-687x.2017.03014 (2018).
Google Scholar
Schoch, C. L. et al. The Ascomycota tree of life: A phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst. Biol. 58, 224–239. https://doi.org/10.1093/sysbio/syp020 (2009).
Google Scholar
Hayat, R., Ali, S., Amara, U., Khalid, R. & Ahmed, I. Soil beneficial bacteria and their role in plant growth promotion: A review. Ann. Microbiol. 60, 579–598. https://doi.org/10.1007/s13213-010-0117-1 (2010).
Google Scholar
Jann Lasse, G., Hurek, T., Wiebke, B. & Reinhold-Hurek, B. Bradyrhizobium vignae sp. nov., a nitrogen-fixing symbiont isolated from effective nodules of Vigna and Arachis. Int. J. Syst. Evol. Microbiol. 66, 62. https://doi.org/10.1099/ijsem.0.000674 (2015).
Google Scholar
Ormeo-Orrillo, E. & Esperanza, M.-R. A genomotaxonomy view of the bradyrhizobium genus. Front. Microbiol. https://doi.org/10.3389/fmicb.2019.01334 (2019).
Google Scholar
Palaniappan, P., Chauhan, P. S., Saravanan, V. S., Anandham, R. & Sa, T. Isolation and characterization of plant growth promoting endophytic bacterial isolates from root nodule of Lespedeza sp. Biol. Fertil. Soils 46, 807–816. https://doi.org/10.1007/s00374-010-0485-5 (2010).
Google Scholar
Wang, H. et al. Impact of soybean nodulation phenotypes and nitrogen fertilizer levels on the rhizosphere bacterial community. Front. Microbiol. https://doi.org/10.3389/fmicb.2020.00750 (2020).
Google Scholar
Wang, M. X. et al. Streptomyces lydicusM01 regulates soil microbial community and alleviates foliar disease caused by Alternaria alternataon cucumbers. Front. Microbiol. https://doi.org/10.3389/fmicb.2020.00942 (2020).
Google Scholar
Li, Y. S. et al. Biological fertilizer containing Bacillus subtilis BY-2 for control of Sclerotinia sclerotiorum on oilseed rape. Crop Prot. https://doi.org/10.1016/j.cropro.2020.105340 (2020).
Google Scholar
Kim, M. J. et al. Enhancement of seed dehiscence by seed treatment with talaromyces flavus GG01 and GG04 in ginseng (Panax ginseng). Plant Pathol. J. 33, 1–8. https://doi.org/10.5423/ppj.Oa.06.2016.0146 (2017).
Google Scholar
Chen, W. et al. Occurrence and characterization of fungi and mycotoxins in contaminated medicinal herbs. Toxins 12, 30. https://doi.org/10.3390/toxins12010030 (2020).
Google Scholar
Naeem, M. et al. Characterization and pathogenicity of fusarium species associated with soybean pods in maize/soybean strip intercropping. Pathogens 8, 117. https://doi.org/10.3390/pathogens8040245 (2019).
Google Scholar
Desjardins, A. Gibberella from A (Venaceae) to Z (eae). Ann. Rev. Phytopathol. 41, 177–198. https://doi.org/10.1146/annurev.phyto.41.011703.115501 (2003).
Google Scholar
Mingna, C. et al. Soil eukaryotic microorganism succession as affected by continuous cropping of peanut: Pathogenic and beneficial fungi were selected. PLoS ONE 7, e40659. https://doi.org/10.1371/journal.pone.0040659 (2012).
Google Scholar
Arafat, Y. et al. Long-term monoculture negatively regulates fungal community composition and abundance of tea orchards. Agronomy https://doi.org/10.3390/agronomy9080466 (2019).
Google Scholar
Zhou, X. G. & Wu, F. Z. Changes in soil chemical characters and enzyme activities during continuous monocropping of cucumber (Cucumis sativus). Pak. J. Bot. 47, 691–697 (2015).
Google Scholar
Shao, S., Chen, M., Liu, W., Hu, X. & Li, Y. Long-term monoculture reduces the symbiotic rhizobial biodiversity of peanut. Syst. Appl. Microbiol. 43, 126101. https://doi.org/10.1016/j.syapm.2020.126101 (2020).
Google Scholar
Zhang, Y., Zheng, Y. J., Xia, P. G., Xun, L. L. & Liang, Z. S. Impact of continuous Panax notoginseng plantation on soil microbial and biochemical properties. Sci. Rep. https://doi.org/10.1038/s41598-019-49625-9 (2019).
Google Scholar
Zhang, L. C. et al. Comparison of soil enzyme activity and microbial community structure between rapeseed-rice and rice-rice plantings. Int. J. Agric. Biol. 20, 1801–1808. https://doi.org/10.17957/ijab/15.0692 (2018).
Google Scholar
Hansen, J. C., Schillinger, W. F., Sullivan, T. S. & Paulitz, T. C. Soil microbial biomass and fungi reduced with canola introduced into long-term monoculture wheat rotations. Front. Microbiol. https://doi.org/10.3389/fmicb.2019.01488 (2019).
Google Scholar
Guo, Z. B. et al. Fertilization regime has a greater effect on soil microbial community structure than crop rotation and growth stage in an agroecosystem. Appl. Soil. Ecol. https://doi.org/10.1016/j.apsoil.2020.103510 (2020).
Google Scholar
Zhao, H. L. et al. Effect of different straw return modes on soil bacterial community, enzyme activities and organic carbon fractions. Soil Sci. Soc. Am. J. 83, 638–648. https://doi.org/10.2136/sssaj2018.03.0101 (2019).
Google Scholar
Agomoh, I. V., Drury, C. F., Phillips, L. A., Reynolds, W. D. & Yang, X. Increasing crop diversity in wheat rotations increases yields but decreases soil health. Soil Sci. Soc. Am. J. https://doi.org/10.1002/saj2.20000 (2020).
Google Scholar
Liu, Z. X. et al. Long-term continuous cropping of soybean is comparable to crop rotation in mediating microbial abundance, diversity and community composition. Soil Tillage Res. https://doi.org/10.1016/j.still.2019.104503 (2020).
Google Scholar
Powlson, D. S., Prookes, P. C. & Christensen, B. T. Measurement of soil microbial biomass provides an early indication of changes in total soil organic matter due to straw incorporation. Soil Biol. Biochem. 19, 159–164. https://doi.org/10.1016/0038-0717(87)90076-9 (1987).
Google Scholar
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335–336. https://doi.org/10.1038/nmeth.f.303 (2010).
Google Scholar
Magoc, T. & Salzberg, S. L. FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957–2963. https://doi.org/10.1093/bioinformatics/btr507 (2011).
Google Scholar
Edgar, R. C. UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996–998. https://doi.org/10.1038/nmeth.2604 (2013).
Google Scholar
Quast, C. et al. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Nucleic Acids Res. 41, D590–D596. https://doi.org/10.1093/nar/gks1219 (2013).
Google Scholar
Kõljalg, U. et al. Towards a unified paradigm for sequence-based identification of fungi. Mol. Ecol. 22, 5271–5277. https://doi.org/10.1111/mec.12481 (2013).
Google Scholar
Bao, S. Soil and Agricultural Chemistry Analysis (Agriculture Press Publisher, 2013).
Guan, S. Y., Zhang, D. & Zhang, Z. Soil Enzyme and its Research Methods (Springer, 1986).
Sinha, A. K. Colorimetric assay of catalase. Anal. Biochem. 47, 389–394. https://doi.org/10.1016/0003-2697(72)90132-7 (1972).
Google Scholar
Schinner, F. & Mersi, W. V. Xylanase-, CM-cellulase- and invertase activity in soil: An improved method. Soil Biol. Biochem. 22, 511–515. https://doi.org/10.1016/0038-0717(90)90187-5 (1990).
Google Scholar
Tabatabai, M. A. & Bremner, J. M. Use of p-nitrophenyl phosphate for assay of soil phosphatase activity. Soil Biol. Biochem. 1, 301–307. https://doi.org/10.1016/0038-0717(69)90012-1 (1969).
Google Scholar
Source: Ecology - nature.com