Newsome, S. D., Clementz, M. T. & Koch, P. L. Using stable isotope biogeochemistry to study marine mammal ecology. Mar. Mamm. Sci. 26, 509–572. https://doi.org/10.1111/j.1748-7692.2009.00354.x (2010).
Google Scholar
Layman, C. A. et al. Applying stable isotopes to examine food-web structure: An overview of analytical tools. Biol. Rev. Camb. Philos. Soc. 87, 545–562. https://doi.org/10.1111/j.1469-185X.2011.00208.x (2011).
Google Scholar
Larsen, T. et al. Tracing carbon sources through aquatic and terrestrial food webs using amino acid stable isotope fingerprinting. PLoS ONE 8, e73441. https://doi.org/10.1371/journal.pone.0073441 (2013).
Google Scholar
Post, D. M. Using stable isotopes to estimate trophic position: Models, methods and assumptions. Ecology 83, 703–718 (2002).
Google Scholar
Inger, R. & Bearhop, S. Applications of stable isotope analyses to avian ecology. Ibis 150, 447–461 (2008).
Google Scholar
McCutchan, J. H., Lewis, W. M., Kendall, C. & McGrath, C. C. Variation in trophic shift for stable isotope ratios of carbon, nitrogen, and sulfur. Oikos 102, 378–390 (2003).
Google Scholar
Olive, P. J. W., Pinnegar, J. K., Polunin, N. V. C., Richards, G. & Welch, R. Isotope trophic-step fractionation: A dynamic equilibrium model. J. Anim. Ecol. 72, 608–617 (2003).
Google Scholar
McMahon, K. W., Polito, M. J., Abel, S., McCarthy, M. D. & Thorrold, S. R. Carbon and nitrogen isotope fractionation of amino acids in an avian marine predator, the gentoo penguin (Pygoscelis papua). Ecol. Evol. 5, 1278–1290. https://doi.org/10.1002/ece3.1437 (2015).
Google Scholar
Webb, E. C. et al. Compound-specific amino acid isotopic proxies for distinguishing between terrestrial and aquatic resource consumption. Archaeol. Anthropol. Sci. 10, 1–18. https://doi.org/10.1007/s12520-015-0309-5 (2016).
Google Scholar
Whiteman, J. P., Kim, S. L., McMahon, K. W., Koch, P. L. & Newsome, S. D. Amino acid isotope discrimination factors for a carnivore: Physiological insights from leopard sharks and their diet. Oecologia 188, 977–989. https://doi.org/10.1007/s00442-018-4276-2 (2018).
Google Scholar
Rogers, M., Bare, R., Gray, A., Scott-Moelder, T. & Heintz, R. Assessment of two feeds on survival, proximate composition, and amino acid carbon isotope discrimination in hatchery-reared Chinook salmon. Fisher. Res. https://doi.org/10.1016/j.fishres.2019.06.001 (2019).
Google Scholar
Wang, Y. V., Wan, A. H. L., Krogdahl, A., Johnson, M. & Larsen, T. (13)C values of glycolytic amino acids as indicators of carbohydrate utilization in carnivorous fish. PeerJ 7, e7701. https://doi.org/10.7717/peerj.7701 (2019).
Google Scholar
McMahon, K. W., Fogel, M. L., Elsdon, T. S. & Thorrold, S. R. Carbon isotope fractionation of amino acids in fish muscle reflects biosynthesis and isotopic routing from dietary protein. J. Anim. Ecol. 79, 1132–1141. https://doi.org/10.1111/j.1365-2656.2010.01722.x (2010).
Google Scholar
McMahon, K. W., Thorrold, S. R., Houghton, L. A. & Berumen, M. L. Tracing carbon flow through coral reef food webs using a compound-specific stable isotope approach. Oecologia 180, 809–821. https://doi.org/10.1007/s00442-015-3475-3 (2016).
Google Scholar
Wang, Y. V. et al. Know your fish: A novel compound-specific isotope approach for tracing wild and farmed salmon. Food Chem 256, 380–389. https://doi.org/10.1016/j.foodchem.2018.02.095 (2018).
Google Scholar
Jim, S., Jones, V., Ambrose, S. H. & Evershed, R. P. Quantifying dietary macronutrient sources of carbon for bone collagen biosynthesis using natural abundance stable carbon isotope analysis. Br J. Nutr. 95, 1055–1062. https://doi.org/10.1079/bjn20051685 (2006).
Google Scholar
Newsome, S. D., Fogel, M. L., Kelly, L. & del Rio, C. M. Contributions of direct incorporation from diet and microbial amino acids to protein synthesis in Nile tilapia. Funct. Ecol. 25, 1051–1062. https://doi.org/10.1111/j.1365-2435.2011.01866.x (2011).
Google Scholar
Griffiths, H. Applications of stable isotope technology in physiological ecology. Funct. Ecol. 5, 254–269 (1991).
Google Scholar
Lorrain, A. et al. Differential δ13C and δ15N signatures among scallop tissues: Implications for ecology and physiology. J. Exp. Mar. Biol. Ecol. 275, 47–61 (2002).
Google Scholar
Li, P., Mai, K., Trushenski, J. & Wu, G. New developments in fish amino acid nutrition: Towards functional and environmentally oriented aquafeeds. Amino Acids 37, 43–53. https://doi.org/10.1007/s00726-008-0171-1 (2009).
Google Scholar
Boecklen, W. J., Yarnes, C. T., Cook, B. A. & James, A. C. On the use of stable isotopes in trophic ecology. Annu. Rev. Ecol. Evol. Syst. 42, 411–440. https://doi.org/10.1146/annurev-ecolsys-102209-144726 (2011).
Google Scholar
Perga, M. E. & Gerdeaux, D. “Are fish what they eat” all year round?. Oecologia 144, 598–606. https://doi.org/10.1007/s00442-005-0069-5 (2005).
Google Scholar
Sponheimer, M. et al. Turnover of stable carbon isotopes in the muscle, liver, and breath CO2 of alpacas (Lama pacos). Rapid Commun. Mass Spectrom. 20, 1395–1399. https://doi.org/10.1002/rcm.2454 (2006).
Google Scholar
Logan, J. M. & Lutcavage, M. E. Stable isotope dynamics in elasmobranch fishes. Hydrobiologia 644, 231–244. https://doi.org/10.1007/s10750-010-0120-3 (2010).
Google Scholar
Madigan, D. J. et al. Tissue turnover rates and isotopic trophic discrimination factors in the endothermic teleost, pacific bluefin tuna (Thunnus orientalis). PLoS ONE 7, e49220. https://doi.org/10.1371/journal.pone.0049220 (2012).
Google Scholar
Skinner, M. M., Cross, B. K. & Moore, B. C. Estimating in situ isotopic turnover in Rainbow Trout (Oncorhynchus mykiss) muscle and liver tissue. J. Freshw. Ecol. 32, 209–217. https://doi.org/10.1080/02705060.2016.1259127 (2016).
Google Scholar
Kaushik, S. J. & Seiliez, I. Protein and amino acid nutrition and metabolism in fish: Current knowledge and future needs. Aquac. Res. 41, 322–332. https://doi.org/10.1111/j.1365-2109.2009.02174.x (2010).
Google Scholar
Hou, Y., Hu, S., Li, X., He, W. & Wu, G. Amino Acid Metabolism in the Liver: Nutritional and Physiological Significance. Vol. 1265 (2020).
Gannes, L. Z., O’Brien, D. M. & Del Rio, C. M. Stable isotopes in animal ecology: Assumptions, caveats and a call for more laboratory experiments. Ecology 78, 1271–1276 (1997).
Google Scholar
Martinez del Rio, C. M., Wolf, N., Carleton, S. A. & Gannes, L. Z. Isotopic ecology ten years after a call for more laboratory experiments. Biol. Rev. Camb. Philos Soc. 84, 91–111. https://doi.org/10.1111/j.1469-185X.2008.00064.x (2009).
Google Scholar
Hendry, A. P., Peichel, C. L., Boughman, J. W., Matthews, B. & Nosil, P. Stickleback research: The now and the next. Evol. Ecol. Res. 15, 111–141 (2013).
Fang, B., Merila, J., Ribeiro, F., Alexandre, C. M. & Momigliano, P. Worldwide phylogeny of three-spined sticklebacks. Mol Phylogenet Evol 127, 613–625. https://doi.org/10.1016/j.ympev.2018.06.008 (2018).
Google Scholar
Kume, M. & Kitano, J. Genetic and stable isotope analyses of threespine stickleback from the Bering and Chukchi seas. Ichthyol. Res. 64, 478–480. https://doi.org/10.1007/s10228-017-0580-9 (2017).
Google Scholar
Reimchen, T. E., Ingram, T. & Hansen, S. C. Assessing niche differences of sex, armour and asymmetry phenotypes using stable isotope analyses in Haida Gwaii sticklebacks. Behaviour 145, 561–577 (2008).
Google Scholar
Pinnegar, J. Unusual stable isotope fractionation patterns observed for fish host–parasite trophic relationships. J. Fish Biol. 59, 494–503. https://doi.org/10.1006/jfbi.2001.1660 (2001).
Google Scholar
Power, M. & Klein, G. M. Fish host-cestode parasite stable isotope enrichment patterns in marine, estuarine and freshwater fishes from northern Canada. Isotopes Environ. Health Stud. 40, 257–266 (2004).
Google Scholar
Li, X., Zheng, S. & Wu, G. Nutrition and metabolism of glutamate and glutamine in fish. Amino Acids 52, 671–691. https://doi.org/10.1007/s00726-020-02851-2 (2020).
Google Scholar
Vander Zanden, M. J., Clayton, M. K., Moody, E. K., Solomon, C. T. & Weidel, B. C. Stable isotope turnover and half-life in animal tissues: A literature synthesis. PLoS ONE 10, e0116182. https://doi.org/10.1371/journal.pone.0116182 (2015).
Google Scholar
Newsome, S. D., del Rio, C. M., Bearhop, S. & Phillips, D. L. A niche for isotopic ecology. Front. Ecol. Environ. 5, 429–436. https://doi.org/10.1890/060150.01 (2007).
Google Scholar
Voigt, C. C., Rex, K., Michener, R. H. & Speakman, J. R. Nutrient routing in omnivorous animals tracked by stable carbon isotopes in tissue and exhaled breath. Oecologia 157, 31–40. https://doi.org/10.1007/s00442-008-1057-3 (2008).
Google Scholar
Tieszen, L. L., Boutton, T. W., Tesdahl, K. G. & Slade, N. A. Fractionation and turnover of stable carbon isotopes in animal tissues: Implications for δ13C analysis of diet. Oecologia 57, 21–37 (1983).
Google Scholar
Cerling, T. E. et al. Determining biological tissue turnover using stable isotopes: The reaction progress variable. Oecologia 151, 175–189. https://doi.org/10.1007/s00442-006-0571-4 (2007).
Google Scholar
Martínez del Rio, C. & Carleton, S. A. How fast and how faithful: The dynamics of isotopic incorporation into animal tissues: Fig. 1. J. Mammal. 93, 353–359. https://doi.org/10.1644/11-mamm-s-165.1 (2012).
Google Scholar
McCullagh, J. S., Juchelka, D. & Hedges, R. E. Analysis of amino acid 13C abundance from human and faunal bone collagen using liquid chromatography/isotope ratio mass spectrometry. Rapid Commun. Mass Spectrom. 20, 2761–2768. https://doi.org/10.1002/rcm.2651 (2006).
Google Scholar
Raghavan, M., McCullagh, J. S., Lynnerup, N. & Hedges, R. E. Amino acid δ13C analysis of hair proteins and bone collagen using liquid chromatography/isotope ratio mass spectrometry: Paleodietary implications from intra-individual comparisons. Rapid Commun. Mass Spectrom. 24, 541–548. https://doi.org/10.1002/rcm.4398 (2010).
Google Scholar
Newsome, S. D., Wolf, N., Peters, J. & Fogel, M. L. Amino acid δ13C analysis shows flexibility in the routing of dietary protein and lipids to the tissue of an omnivore. Integr. Comp. Biol. 54, 890–902. https://doi.org/10.1093/icb/icu106 (2014).
Google Scholar
Walton, M. J. & Cowey, C. B. Aspects of intermediary metabolism in salmonid fish. Comp. Biochem. Physiol. 73B, 59–79 (1982).
Google Scholar
Fernandes, R., Nadeau, M.-J. & Grootes, P. M. Macronutrient-based model for dietary carbon routing in bone collagen and bioapatite. Archaeol. Anthropol. Sci. 4, 291–301. https://doi.org/10.1007/s12520-012-0102-7 (2012).
Google Scholar
Ohkouchi, N., Ogawa, N. O., Chikaraishi, Y., Tanaka, H. & Wada, E. Biochemical and physiological bases for the use of carbon and nitrogen isotopes in environmental and ecological studies. Prog. Earth Planet Sci. 2, 1–17. https://doi.org/10.1186/s40645-015-0032-y (2015).
Google Scholar
Wu, G. & Morris, M. Arginine metabolism: Nitric oxide and beyond. Biochem. J. 336, 1–17 (1998).
Google Scholar
Metges, C. C., Petzke, K. J. & Henning, U. Gas chromatography/combustion/isotope ratio mass spectrometric comparison of N-acetyl- and N-pivaloyl amino acid esters to measure 15N isotopic abundances in physiological samples : A pilot study on amino acid synthesis in the upper gastro-intestinal tract of minipigs. J. Mass Spectrom. 31, 367–376 (1996).
Google Scholar
Dunn, P. J., Honch, N. V. & Evershed, R. P. Comparison of liquid chromatography-isotope ratio mass spectrometry (LC/IRMS) and gas chromatography-combustion-isotope ratio mass spectrometry (GC/C/IRMS) for the determination of collagen amino acid δ13C values for palaeodietary and palaeoecological reconstruction. Rapid Commun. Mass Spectrom. 25, 2995–3011. https://doi.org/10.1002/rcm.5174 (2011).
Google Scholar
Ayayee, P. A., Jones, S. C. & Sabree, Z. L. Can (13)C stable isotope analysis uncover essential amino acid provisioning by termite-associated gut microbes?. PeerJ 3, e1218. https://doi.org/10.7717/peerj.1218 (2015).
Google Scholar
Ayayee, P. A., Larsen, T. & Sabree, Z. Symbiotic essential amino acids provisioning in the American cockroach, Periplaneta americana (Linnaeus) under various dietary conditions. PeerJ 4, e2046. https://doi.org/10.7717/peerj.2046 (2016).
Google Scholar
Larsen, T. et al. The dominant detritus-feeding invertebrate in Arctic peat soils derives its essential amino acids from gut symbionts. J. Anim. Ecol. 85, 1275–1285. https://doi.org/10.1111/1365-2656.12563 (2016).
Google Scholar
Romero-Romero, S., Miller, E. C., Black, J. A., Popp, B. N. & Drazen, J. C. Abyssal deposit feeders are secondary consumers of detritus and rely on nutrition derived from microbial communities in their guts. Sci. Rep. 11, 12594. https://doi.org/10.1038/s41598-021-91927-4 (2021).
Google Scholar
McCullagh, J. S. Mixed-mode chromatography/isotope ratio mass spectrometry. Rapid Commun. Mass Spectrom. 24, 483–494. https://doi.org/10.1002/rcm.4322 (2010).
Google Scholar
Tsai, Y. et al. Histamine contents of fermented fish products in Taiwan and isolation of histamine-forming bacteria. Food Chem. 98, 64–70. https://doi.org/10.1016/j.foodchem.2005.04.036 (2006).
Google Scholar
Landete, J. M., De Las Rivas, B., Marcobal, A. & Munoz, R. Updated molecular knowledge about histamine biosynthesis by bacteria. Crit. Rev. Food Sci. Nutr. 48, 697–714. https://doi.org/10.1080/10408390701639041 (2008).
Google Scholar
Kanki, M., Yoda, T., Tsukamoto, T. & Baba, E. Histidine decarboxylases and their role in accumulation of histamine in tuna and dried saury. Appl. Environ. Microbiol. 73, 1467–1473. https://doi.org/10.1128/AEM.01907-06 (2007).
Google Scholar
Fernandez-Salguero, J. & Mackie, I. M. Histidine metabolism in mackerel (Scomber scombrus). Studies on histidine decarboxylase activity and histamine formation during storage of flesh and liver under sterile and non-sterile conditions. J. Fd Technol. 14, 131–139 (1979).
Google Scholar
Sánchez-Muros, M.-J., Barroso, F. G. & Manzano-Agugliaro, F. Insect meal as renewable source of food for animal feeding: A review. J. Clean. Prod. 65, 16–27. https://doi.org/10.1016/j.jclepro.2013.11.068 (2014).
Google Scholar
Khan, M. A. Histidine requirement of cultivable fish species: A review. Oceanogr Fish Open Access J. 8, 1–7. https://doi.org/10.19080/ofoaj.2018.08.555746 (2018).
Google Scholar
Hatch, K. A. in Comparative Physiology of Fasting, Starvation, and Food Limitation Ch. Chapter 20, 337–364 (2012).
Bertinetto, C., Engel, J. & Jansen, J. ANOVA simultaneous component analysis: A tutorial review. Anal. Chim. Acta X 6, 100061. https://doi.org/10.1016/j.acax.2020.100061 (2020).
Google Scholar
Nogales-Mérida, S. et al. Insect meals in fish nutrition. Rev. Aquac. 11, 1080–1103. https://doi.org/10.1111/raq.12281 (2018).
Google Scholar
Thongprajukaew, K., Pettawee, S., Muangthong, S., Saekhow, S. & Phromkunthong, W. Freeze-dried forms of mosquito larvae for feeding of Siamese fighting fish (Betta splendens Regan, 1910). Aquac. Res. 50, 296–303. https://doi.org/10.1111/are.13897 (2018).
Google Scholar
Jackson, G. P., An, Y., Konstantynova, K. I. & Rashaid, A. H. Biometrics from the carbon isotope ratio analysis of amino acids in human hair. Sci. Justice 55, 43–50. https://doi.org/10.1016/j.scijus.2014.07.002 (2015).
Google Scholar
Werner, R. A. & Brand, W. A. Referencing strategies and techniques in stable isotope ratio analysis. Rapid. Commun. Mass Spectrom. 15, 501–519. https://doi.org/10.1002/rcm.258 (2001).
Google Scholar
Marks, R. G. H., Jochmann, M. A., Brand, W. A. & Schmidt, T. C. How to couple LC-IRMS with HRMS─a proof-of-concept study. Anal. Chem. 94, 2981–2987 (2022).
Google Scholar
Lynch, A. H., McCullagh, J. S. & Hedges, R. E. Liquid chromatography/isotope ratio mass spectrometry measurement of δ13C of amino acids in plant proteins. Rapid Commun. Mass Spectrom. 25, 2981–2988. https://doi.org/10.1002/rcm.5142 (2011).
Google Scholar
Falco, F., Stincone, P., Cammarata, M. & Brandelli, A. Amino acids as the main energy source in fish tissues. Aquac. Fish Stud. 3, 1–11 (2020).
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