Gibney, E. R. & Nolan, C. M. Epigenetics and gene expression. Heredity 105, 4–13 (2010).
Google Scholar
Vogt, G. Facilitation of environmental adaptation and evolution by epigenetic phenotype variation: Insights from clonal, invasive, polyploid, and domesticated animals. Environ. Epigenet. 3, 1–17 (2017).
Beal, A., Rodriguez-Casariego, J., Rivera-Casas, C., Suarez-Ulloa, V. & Eirin-Lopez, J. M. Environmental Epigenomics and Its Applications in Marine Organisms 325–359 (Springer, 2018). https://doi.org/10.1007/13836_2018_28.
Google Scholar
Hofmann, G. E. Ecological epigenetics in marine metazoans. Front. Mar. Sci. 4, 1–7 (2017).
Google Scholar
Richards, C. L. et al. Ecological plant epigenetics: Evidence from model and non-model species, and the way forward. Ecol. Lett. 20, 1576–1590 (2017).
Google Scholar
Ryu, T., Veilleux, H. D., Donelson, J. M., Munday, P. L. & Ravasi, T. The epigenetic landscape of transgenerational acclimation to ocean warming. Nat. Clim. Chang. 8, 504–509 (2018).
Google Scholar
Liew, Y. J. et al. Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral. Sci. Adv. 4, 6 (2018).
Anastasiadi, D., Díaz, N. & Piferrer, F. Small ocean temperature increases elicit stage-dependent changes in DNA methylation and gene expression in a fish, the European sea bass. Sci. Rep. 7, 1–12 (2017).
Google Scholar
Strader, M. E., Wong, J. M., Kozal, L. C., Leach, T. S. & Hofmann, G. E. Parental environments alter DNA methylation in offspring of the purple sea urchin, Strongylocentrotus purpuratus. J. Exp. Mar. Bio. Ecol. 517, 54–64 (2019).
Rey, O. et al. Linking epigenetics and biological conservation: Towards a conservation epigenetics perspective. Funct. Ecol. 34, 414–427 (2020).
Eirin-Lopez, J. M. & Putnam, H. Editorial: Marine environmental epigenetics. Front. Mar. Sci. 8, 5 (2021).
Herrera, C. M. & Bazaga, P. Untangling individual variation in natural populations: Ecological, genetic and epigenetic correlates of longterm inequality in herbivory. Mol. Ecol. 20, 1675–1688 (2011).
Google Scholar
Varriale, A. DNA methylation, epigenetics, and evolution in vertebrates: Facts and challenges. Int. J. Evol. Biol. 2014, 1–7 (2014).
Liebl, A. L., Wesner, J. S., Russell, A. F. & Schrey, A. W. Methylation patterns at fledging predict delayed dispersal in a cooperatively breeding bird. PLoS ONE 16, e0252227 (2021).
Google Scholar
Metzger, D. C. H. & Schulte, P. M. Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback (Gasterosteus aculeatus). Proc. R. Soc. B Biol. Sci. 284, 5 (2017).
Putnam, H. M., Davidson, J. M. & Gates, R. D. Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals. Evol. Appl. 9, 1165–1178 (2016).
Google Scholar
Watson, R. G. A., Baldanzi, S., Pérez-Figueroa, A., Gouws, G. & Porri, F. Morphological and epigenetic variation in mussels from contrasting environments. Mar. Biol. 165, 8 (2018).
Baldanzi, S., Watson, R., McQuaid, C. D., Gouws, G. & Porri, F. Epigenetic variation among natural populations of the South African sandhopper Talorchestia capensis. Evol. Ecol. 31, 77–91 (2017).
Ardura, A., Zaiko, A., Morán, P., Planes, S. & Garcia-Vazquez, E. Epigenetic signatures of invasive status in populations of marine invertebrates. Sci. Rep. 7, 5 (2017).
Baldanzi, S., Storch, D., Navarrete, S. A., Graeve, M. & Fernández, M. Latitudinal variation in maternal investment traits of the kelp crab Taliepus dentatus along the coast of Chile. Mar. Biol. 165, 1 (2018).
Sobarzo, M., Bravo, L., Donoso, D., Garcés-Vargas, J. & Schneider, W. Coastal upwelling and seasonal cycles that influence the water column over the continental shelf off central Chile. Prog. Oceanogr. 75, 363–382 (2007).
Google Scholar
Letelier, J., Pizarro, O. & Nuñez, S. Seasonal variability of coastal upwelling and the upwelling front off central Chile. J. Geophys. Res. Ocean. 114, 12009 (2009).
Google Scholar
Vargas, C. A. et al. Species-specific responses to ocean acidification should account for local adaptation and adaptive plasticity. Nat. Ecol. Evol. 1, 1–7 (2017).
Google Scholar
Pérez, C. A. et al. Influence of climate and land use in carbon biogeochemistry in lower reaches of rivers in central southern Chile: Implications for the carbonate system in river-influenced rocky shore environments. J. Geophys. Res. Biogeosciences 120, 673–692 (2015).
Google Scholar
Saldías, G. S. et al. Satellite-measured interannual variability of turbid river plumes off central-southern Chile: Spatial patterns and the influence of climate variability. Prog. Oceanogr. 146, 212–222 (2016).
Google Scholar
Lara, C. et al. Coastal biophysical processes and the biogeography of rocky intertidal species along the south-eastern Pacific. J. Biogeogr. 46, 420–431 (2019).
Wieters, E. A. Upwelling control of positive interactions over mesoscales: A new link between bottom-up and top-down processes on rocky shores. Mar. Ecol. Prog. Ser. 301, 43–54 (2005).
Google Scholar
Pérez-Matus, A., Carrasco, S. A., Gelcich, S., Fernandez, M. & Wieters, E. A. Exploring the effects of fishing pressure and upwelling intensity over subtidal kelp forest communities in Central Chile. Ecosphere 8, e01808 (2017).
Iranon, N. N. & Miller, D. L. Interactions between oxygen homeostasis, food availability, and hydrogen sulfide signaling. Front. Genet. 3, 5 (2012).
Ramajo, L., Lagos, N. A. & Duarte, C. M. Seagrass Posidonia oceanica diel pH fluctuations reduce the mortality of epiphytic forams under experimental ocean acidification. Mar. Pollut. Bull. 146, 247–254 (2019).
Google Scholar
Aiken, C. & Navarrete, S. Environmental fluctuations and asymmetrical dispersal: Generalized stability theory for studying metapopulation persistence and marine protected areas. Mar. Ecol. Prog. Ser. 428, 77–88 (2011).
Google Scholar
Baldanzi, S. et al. Combined effects of temperature and hypoxia shape female brooding behaviors and the early ontogeny of the Chilean kelp crab Taliepus dentatus. Mar. Ecol. Prog. Ser. 646, 93–107 (2020).
Google Scholar
Moran, A. L. & McAlister, J. S. Egg size as a life history character of marine invertebrates: Is it all it’s cracked up to be?. Biol. Bull. 216, 226–242 (2009).
Google Scholar
Doherty-Weason, D. et al. Bioenergetics of parental investment in two polychaete species with contrasting reproductive strategies: The planktotrophic Boccardia chilensis and the poecilogonic Boccardia wellingtonensis (Spionidae). Mar. Ecol. 41, 1 (2020).
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B 57, 289–300 (1995).
Google Scholar
Steneck, R. S. et al. Kelp forest ecosystems: Biodiversity, stability, resilience and future. Environ. Conserv. 29, 436–459 (2002).
Sayols-Baixeras, S., Irvin, M. R., Arnett, D. K., Elosua, R. & Aslibekyan, S. W. Epigenetics of lipid phenotypes. Curr. Cardiovasc. Risk Rep. 10, 1–205 (2016).
Adam, A. C. et al. Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid. PLoS ONE 14, e0220934 (2019).
Google Scholar
García-Fernández, P., García-Souto, D., Almansa, E., Morán, P. & Gestal, C. Epigenetic DNA methylation mediating Octopus vulgaris early development: Effect of essential fatty acids enriched diet. Front. Physiol. 8, 1–9 (2017).
Hearn, J., Pearson, M., Blaxter, M., Wilson, P. J. & Little, T. J. Genome-wide methylation is modified by caloric restriction in Daphnia magna. BMC Genomics 20, 1–11 (2019).
Palma, A. T., Henríquez, L. A. & Ojeda, F. P. Phytoplanktonic primary production modulated by coastal geomorphology in a highly dynamic environment of central Chile. Rev. Biol. Mar. Oceanogr. 44, 325–334 (2009).
Faúndez-Báez, P., Morales, C. E. & Arcos, D. Variabilidad espacial y temporal en la hidrografía invernal del sistema de bahías frente a la VIII región (Chile centro-sur). Rev. Chil. Hist. Nat. 74, 817–831 (2001).
Osma, N. et al. Response of phytoplankton assemblages from naturally acidic coastal ecosystems to elevated pCO2. Front. Mar. Sci. 1, 323 (2020).
Rebolledo, L. et al. Siliceous productivity changes in Gulf of Ancud sediments (42°S, 72°W), southern Chile, over the last ∼150 years. Cont. Shelf Res. 31, 356–365 (2011).
Google Scholar
Sun, Y. et al. Genome-wide analysis of DNA methylation in five tissues of Zhikong Scallop, Chlamys farreri. PLoS ONE 9, e86232 (2014).
Google Scholar
Bernhardt, J. R., O’Connor, M. I., Sunday, J. M. & Gonzalez, A. Life in fluctuating environments. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 375, 20190454 (2020).
Google Scholar
Feinberg, A. P. & Irizarry, R. A. Colloquium Paper: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease. Proc. Natl. Acad. Sci. USA 107, 1757 (2010).
Google Scholar
Tapia, F. J., Largier, J. L., Castillo, M., Wieters, E. A. & Navarrete, S. A. Latitudinal discontinuity in thermal conditions along the nearshore of Central-Northern Chile. PLoS ONE 9, e110841 (2014).
Google Scholar
Reyna-López, G. E., Simpson, J. & Ruiz-Herrera, J. Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol. Gen. Genet. 253, 703–710 (1997).
Google Scholar
Pérez-Figueroa, A. msap: A tool for the statistical analysis of methylation-sensitive amplified polymorphism data. Mol. Ecol. Resour. 13, 522–527 (2013).
Google Scholar
Gu, Z., Eils, R. & Schlesner, M. Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinformatics 32, 2847–2849 (2016).
Google Scholar
Valladares, F., Sanches-Gomez, D. & Zavala, M. A. Quantitative estimation of phenotypic plasticity: Bridging the gap between the evolutionary concept and its ecological applications. J. Ecol. 94, 1103–1116 (2006).
Excoffier, L., Smouse, P. E. & Quattro, J. M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131, 479–491 (1992).
Google Scholar
Source: Ecology - nature.com