in

Microbial community structure is stratified at the millimeter-scale across the soil–water interface

  • McClain ME, Boyer EW, Dent CL, Gergel SE, Grimm NB, Groffman PM, et al. Biogeochemical hot spots and hot moments at the interface of terrestrial and aquatic ecosystems. Ecosystems. 2003;6:301–12.

    CAS 
    Article 

    Google Scholar 

  • Borch T, Kretzschmar R, Kappler A, Van Cappellen P, Ginder-Vogel M, Voegelin A, et al. Biogeochemical redox processes and their impact on contaminant dynamics. Environ Sci Technol. 2010;44:15–23.

    CAS 
    Article 

    Google Scholar 

  • Stegen JC, Lin XJ, Konopka AE, Fredrickson JK. Stochastic and deterministic assembly processes in subsurface microbial communities. ISME J. 2012;6:1653–64.

    CAS 
    Article 

    Google Scholar 

  • Dini-Andreote F, Stegen JC, van Elsas JD, Salles JF. Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession. Proc Natl Acad Sci USA. 2015;112:E1326–32.

    CAS 
    Article 

    Google Scholar 

  • Behrendt L, Larkum AWD, Trampe E, Norman A, Sorensen SJ, Kuhl M. Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella. ISME J. 2012;6:1222–37.

    CAS 
    Article 

    Google Scholar 

  • Becker KW, Elling FJ, Schroder JM, Lipp JS, Goldhammer T, Zabel M, et al. Isoprenoid quinones resolve the stratification of redox processes in a biogeochemical continuum from the photic zone to deep anoxic sediments of the Black Sea. Appl Environ Microbiol. 2018;84:e02736–17.

    CAS 
    Article 

    Google Scholar 

  • Locey KJ, Muscarella ME, Larsen ML, Bray SR, Jones SE, Lennon JT. Dormancy dampens the microbial distance-decay relationship. Phil Trans R Soc B. 2020;375:20190243.

    CAS 
    Article 

    Google Scholar 

  • Blagodatskaya E, Kuzyakov Y. Active microorganisms in soil: critical review of estimation criteria and approaches. Soil Biol Biochem. 2013;67:192–211.

    CAS 
    Article 

    Google Scholar 

  • Meyer KM, Memiaghe H, Korte L, Kenfack D, Alonso A, Bohannan BJM. Why do microbes exhibit weak biogeographic patterns? ISME J. 2018;12:1404–13.

    Article 

    Google Scholar 

  • Xue R, Zhao KK, Yu XL, Stirling E, Liu S, Ye SD, et al. Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale. Soil Biol Biochem. 2021;156:108218.

    CAS 
    Article 

    Google Scholar 

  • Morriss A, Meyer K, Bohannan B. Linking microbial communities to ecosystem functions: what we can learn from genotype-phenotype mapping in organisms. Phil Trans R Soc B. 2020;375:20190244.

    Article 

    Google Scholar 

  • Armitage DW, Jones SE. How sample heterogeneity can obscure the signal of microbial interactions. ISME J. 2019;13:2639–46.

    Article 

    Google Scholar 

  • Dini-Andreote F, Kowalchuk GA, Prosser JI, Raaijmakers JM. Towards meaningful scales in ecosystem microbiome research. Environ Microbiol. 2021;23:1–4.

    Article 

    Google Scholar 

  • Meyerhof MS, Wilson JM, Dawson MN, Beman JM. Microbial community diversity, structure and assembly across oxygen gradients in meromictic marine lakes, Palau. Environ Microbiol. 2016;18:4907–19.

    CAS 
    Article 

    Google Scholar 

  • Zhou ZC, Meng H, Liu Y, Gu JD, Li M. Stratified bacterial and archaeal community in mangrove and intertidal wetland mudflats revealed by high throughput 16S rRNA gene sequencing. Front Microbiol. 2017;8:02148.

    Article 

    Google Scholar 

  • Gutierrez-Preciado A, Saghai A, Moreira D, Zivanovic Y, Deschamps P, Lopez-Garcia P. Functional shifts in microbial mats recapitulate early Earth metabolic transitions. Nat Ecol Evol. 2018;2:1700–8.

    Article 

    Google Scholar 

  • Louca S, Parfrey LW, Doebeli M. Decoupling function and taxonomy in the global ocean microbiome. Science. 2016;353:1272–7.

    CAS 
    Article 

    Google Scholar 

  • Murase J, Frenzel P. A methane-driven microbial food web in a wetland rice soil. Environ Microbiol. 2007;9:3025–34.

    CAS 
    Article 

    Google Scholar 

  • Reim A, Lüke C, Krause S, Pratscher J, Frenzel P. One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic-anoxic interface in a flooded paddy soil. ISME J. 2012;6:2128–39.

    CAS 
    Article 

    Google Scholar 

  • Peiffer S, Kappler A, Haderlein SB, Schmidt C, Byrne JM, Kleindienst S, et al. A biogeochemical–hydrological framework for the role of redox-active compounds in aquatic systems. Nat Geosci. 2021;14:264–72.

    CAS 
    Article 

    Google Scholar 


  • Source: Ecology - nature.com

    Kerry Emanuel: A climate scientist and meteorologist in the eye of the storm

    Better living through multicellular life cycles