Aguiar-Melo C, Zanella CM, Goetze M, Palma-Silva C, Hirsch LD, Neves B et al. (2019) Ecological niche modeling and a lack of phylogeographic structure in Vriesea incurvata suggest historically stable areas in the southern Atlantic Forest. Am J Bot https://doi.org/10.1002/ajb2.1317
Bicudo MOP, Ribani RH, Beta T (2014) Anthocyanins, phenolic acids and antioxidant properties of juçara fruits (Euterpe edulis M.) along the on-tree ripening process. Plant Foods Hum Nutr https://doi.org/10.1007/s11130-014-0406-0
Blengini IAD, Cintra MAMU, Caiafa AN (2015) Proposta de Unidade de Conservação da Serra da Jiboia. Gambá, Salvador, BA, https://www.gamba.org.br/wp-content/uploads/2016/03/Proposta-Final.pdf Accessed 05 May 2022
Bourscheid K (2011) Euterpe edulis—Palmito juçara. In: Coradin L, Siminski A, Câmara, Reis A (Eds) Espécies nativas da flora brasileira de valor econômico atual ou potencial: plantas para o futuro – Região Sul. Ministério do Meio Ambiente, Brasília, D, p 179–183
Cabanne GS, d’Horta FM, Sari EHR, Santos FR, Miyaki CY (2008) Nuclear and mitochondrial phylogeography of the Atlantic forest endemic Xiphorhynchus fuscus (Aves: Dendrocolaptidae): Biogeography and systematics implications Molecular. Mol Phylogenet Evol https://doi.org/10.1016/j.ympev.2008.09.013
Cabanne GS, Santos FR, Miyaki CY (2007) Phylogeography of Xiphorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest. Biol J Linn Soc https://doi.org/10.1111/j.1095-8312.2007.00775.x
Câmara IG (2003) Brief history of conservation in the Atlantic Forest. In: Galindo Leal C, Câmara IG (Eds.) The Atlantic Forest of South America: Biodiversity Status, Threats, and Outlook. CABS and Island Press, Washington, p 31–42
Carnaval AC, Moritz C (2008) Historical climate modelling predicts patterns of current biodiversity in the Brazilian Atlantic Forest J Biogeogr https://doi.org/10.1111/j.1365-2699.2007.01870.x
Carnaval AC, Moritz C, Hickerson M, Haddad C, Rodrigues M (2009) Stability predicts diversity in the Brazilian Atlantic Forest hotspot. Science https://doi.org/10.1126/science.1166955
Carnaval AC, Waltari E, Rodrigues MT, Rosauer D, VanDerWa J, Damasceno R et al. (2014) Prediction of phylogeographic endemism in an environmentally complex biome. Proc R Soc Lond https://doi.org/10.1098/rspb.2014.1461
Carvalho CDS, Garcia C, Lucas MS, Jordano P, Cortes MC (2021) Extant fruit‐eating birds promote genetically diverse seed rain, but disperse to fewer sites in defaunated tropical forests. J Ecol https://doi.org/10.1111/1365-2745.13534
Carvalho CS, Ballesteros-Mejia L, Ribeiro MC, Côrtes MC, Santos AS, Collevatti RG (2017) Climatic stability and contemporary human impacts affect the genetic diversity and conservation status of a tropical palm in the Atlantic Forest of Brazil Conserv Genet https://doi.org/10.1007/s10592-016-0921-7
Carvalho CS, Galetti M, Colevatti RG, Jordano P (2016) Defaunation leads to microevolutionary changes in a tropical palm. Sci Rep https://doi.org/10.1038/srep31957
Carvalho CS, Ribeiro MC, Côrtes MC, Galetti M, Collevatti RG (2015) Contemporary and historic factors influence differently genetic differentiation and diversity in a tropical palm. Heredity https://doi.org/10.1038/hdy.2015.30
Carvalho MS, Noia LR, Ferreira MFS, Ferreira A (2019) DNA de alta qualidade isolado a partir do córtex de Euterpe edulis Mart. (Arecaceae). Cienc Florest https://doi.org/10.5902/1980509824130
Chávez-Pesqueira M, Núñez-Farfán J (2016) Genetic diversity and structure of wild populations of Carica papaya in Northern Mesoamerica inferred by nuclear microsatellites and chloroplast markers. Ann Bot https://doi.org/10.1093/aob/mcw183
Cheng H, Sinha A, Cruz FW, Wang X, Edwards RL, d’Horta FM et al. (2013) Climate change patterns in Amazonia and biodiversity. Nat Commun https://doi.org/10.1038/ncomms2415
Chhatre VE, Emerson KJ (2017) StrAuto: automation and parallelization of STRUCTURE analysis. BMC Bioinform https://doi.org/10.1186/s12859-017-1593-0
Chybicki IJ, Burczyk J (2009) Simultaneous Estimation of Null Alleles and Inbreeding Coefficients. J Hered https://doi.org/10.1093/jhered/esn088
Collevatti RG, Lima-Ribeiro MS, Terribile LC et al. (2014) Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species. BMC Evol Biol https://doi.org/10.1186/s12862-014-0213-0
Côrtes MC, Uriarte M, Lemes MR, Gribel R, Kress WJ, Smouse PE et al. (2013) Low plant density enhances gene dispersal in the Amazonian understory herb Heliconia acuminata. Mol Ecol https://doi.org/10.1111/mec.12495
Cortez MBS, Sforça DA, Alves FM, Vidal JD, Alves-Pereira A, Mori GM, Andreotti IA et al. (2019) Elucidating the Clusia criuva species ‘complex’: cryptic taxa can exhibit great genetic and geographical variation. Biol J Linn Soc https://doi.org/10.1093/botlinnean/boz004
Costa PC, Lorenz-Lemke AP, Furini PR, Honorio Coronado EN, Kjellberg F, Pereira RA (2017) The phylogeography of two disjunct Neotropical Ficus (Moraceae) species reveals contrasted histories between the Amazon and the Atlantic Forests. Biol J Linn Soc https://doi.org/10.1093/botlinnean/box056
d’Horta FM, Cabanne GS, Meyer D, Miyaki CY (2011) The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine. Mol Ecol https://doi.org/10.1111/j.1365-294X.2011.05063.x
Earl DA, Von Holdt BM (2011) STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet Resources https://doi.org/10.1007/s12686-011-9548-7
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol https://doi.org/10.1111/j.1365-294X.2005.02553.x
Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform PMCID: PMC2658868
Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics PMCID: PMC1462648
Fantini AC, Guries R, Ribeiro RJ (2000) Produção de palmito (Euterpe edulis Martius Arecaceae) na Floresta Ombrófila Densa: potenciais, problema e possíveis soluções. In: Reis MS, Reis A (Eds.) Euterpe edulis Martius (Palmiteiro) Biologia, Conservação e Manejo. Herbário Barbosa Rodrigues, Itajaí, p 256–280
Fundação Instituto Brasileiro de Geografia e Estatística (1993) Recursos naturais e meio ambiente: Uma visão do Brasil. Fundação Instituto Brasileiro de Geografia e Estatística, Rio de Janeiro
Gaiotto FA, Brondani RPV, Grattapaglia D (2001) Microsatellite markers for heart of palm–Euterpe edulis and E, oleracea Mart, (Arecaceae). Mol Ecol Notes https://doi.org/10.1046/j.1471-8278.2001.00036.x
Gaiotto FA, Grattapaglia D, Vencovsky V (2003) Genetic structure, mating system, and long-distance gene flow in heart of palm (Euterpe edulis Mart.). J Hered 94(5):399–406. https://doi.org/10.1093/jhered/esg087
Google Scholar
Galetti M, Fernandez JC (1998) Palm heart harvesting in the Brazilian Atlantic forest: changes in industry structure and the illegal trade. J Appl Ecol https://doi.org/10.1046/j.1365-2664.1998.00295.x
Galetti M, Guevara R, Côrtes MC, Fadini R, Von Mattes S, Leite AB et al. (2013) Functional extinction of birds drives rapid evolutionary changes in seed size. Science https://doi.org/10.1126/science.1233774
Gatti MG, Campanello PI, Montti LF, Goldstein G (2008) Frost resistance in the tropical palm Euterpe edulis and its pattern of distribution in the Atlantic Forest of Argentina. For Ecol Manag https://doi.org/10.1016/j.foreco.2008.05.012
Ghazoul J (2005) Pollen and seed dispersal among dispersed plants. Biological Reviews Cambridge Philosophical Society. https://doi.org/10.1017/S1464793105006731
Goudet J (2002) FSTAT: a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). http://www2.unil.ch/popgen/softwares/fstat.htm
Gugger PF, Ikegami M, Sork VL (2013) Influence of late Quaternary climate change on present patterns of genetic variation in valley oak, Quercus lobata. Mol Ecol https://doi.org/10.1111/mec.12317
Hardy OJ, Charbonnel N, Fréville H, Heuertz M (2003) Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation. Genetics https://doi.org/10.1093/genetics/163.4.1467
Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyses spatial genetic structure at the individual or population levels. Mol Ecol Notes https://doi.org/10.1046/j.1471-8286.2002.00305.x
Henderson A, Galeano G, Bernal R (1995) Field guide to the palms of the Americas. Princeton University Press, Princeton, NJ, p 352
Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature https://doi.org/10.1038/35016000
Hulce D, Li X, Snyder-Leiby T, Johathan Liu CS (2011) GeneMarker® Genotyping Software: tools to increase the statistical power of DNA fragment analysis. J Biomol Screen PMCID: PMC3186482
Joly C, Aidar M, Klink CA, McGrath DG, Moreira AG, Moutinho P et al. (1999) Evolution of the Brazilian phytogeography classification systems: implications for biodiversity conservation. Ciên e Cul 51:331–348
Konzen ER, Martins, MP (2017) Contrasting levels of genetic diversity among populations of the endangered tropical palm Euterpe edulis Martius, Cerne https://doi.org/10.1590/01047760201723012237.
Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I (2015) Clumpak: a program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Resour https://doi.org/10.1111/1755-0998.12387
Lauterjung MB, Montagna T, Bernardi AP, Silva JZ, Freitas NCC, Steiner, F et al. (2019) Temporal changes in population genetics of six threatened Brazilian plant species in a fragmented landscape. For Ecol Manag https://doi.org/10.1016/j.foreco.2018.12.058
Leitman P, Judice DM, Barros FSM, Prieto PV (2013) Arecaceae, In: Martinelli G, Moraes MA (org) Livro Vermelho da Flora do Brasil. CNCFlora, Rio de Janeiro, pp 187–195
Lewis PO, Zaykin D (2002) Genetic data analysis: Computer program for the analysis of allelic data. http://phylogeny.uconn.edu/software/
Martins FM (2011) Historical biogeography of the Brazilian Atlantic forest and the Carnaval—Moritz model of Pleistocene refugia: what do phylogeographical studies tell us? Biol. J Linn Soc https://doi.org/10.1111/j.1095-8312.2011.01745.x
Martins FM, Ditchfield AD, Meyer D, Morgante JS (2007) Mitochondrial DNA phylogeography reveals marked population structure in the common vampire bat, Desmodus rotundus (Phyllostomidae). J Zoolog Syst Evol https://doi.org/10.1111/j.1439-0469.2007.00419.x
Novello M, Viana JPG, Alves-Pereira A, Silvestre EA, Nunes HF, Pinheiro JB et al. (2017) Genetic conservation of a threatened Neotropical palm through community-management of fruits in agroforests and second-growth forests. For Ecol Manag https://doi.org/10.1016/j.foreco.2017.06.059
Oliveira-Filho A, Fontes M (2000) Patterns of floristic differentiation among Atlantic forests in southeastern Brazil and the influence of climate. Biotropica https://doi.org/10.1111/j.1744-7429.2000.tb00619.x
Ortego J, Riordan EC, Gugger PF, Sork VL (2012) Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak. Mol Ecol https://doi.org/10.1111/j.1365-294X.2012.05591.x
Palma-Silva C, Lexer C, Paggi GM, Barbará T, Bered F, BodaneseZanettini MH (2009) Range-wide patterns of nuclear and chloroplast DNA diversity in Vriesea gigantea (Bromeliaceae), a neotropical forest species. Heredity 103:503–512
Google Scholar
Pauls SU, Nowak C, Bálint M, Pfenninger M (2013) The impact of global climate change on genetic diversity within populations and species. Mol Ecol https://doi.org/10.1111/mec.12152
Petit RJ, Csaiklb UM, Bordácsbc S, Burgb K, Coartd E, Cottrelle J et al. (2002) Chloroplast DNA variation in European white oaks. Phylogeography and patterns of diversity based on data from over 2600 populations. For Ecol Manag https://doi.org/10.1016/S0378-1127(01)00645-4
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics https://doi.org/10.1093/genetics/155.2.945
Pritchard JK, Wen X, Falush D (2010) Documentation for structure software: Version o2.3. http://web.stanford.edu/group/pritchardlab/structure.html
Rambaut A, Drummond AJ (2007) TRACER version 1.4. http://beast.bio.ed.ac.uk/Tracer. Accessed 05 May 2022
Reis A, Kageyama PY (2000) Dispersão de sementes de Euterpe edulis Martius Palmae. In: Reis MS, Reis A (Eds.) Euterpe edulis Martius (Palmiteiro): biologia, conservação e manejo. Herbário Barbosa Rodrigues, Itajaí, p 60–92
Ribeiro MC, Metzger JP, Martensen AC, FPonzoni FJ, Hirota MM (2009) The Brazilian Atlantic Forest: How much is left, and how is the remaining forest distributed? Implications for conservation. Biol Conserv https://doi.org/10.1016/j.biocon.2009.02.021
Santos AS, Cazetta E, Morante Filho JC, Baumgarten J, Faria D, Gaiotto FA (2015) Lessons from a palm: genetic diversity and structure in anthropogenic landscapes from Atlantic Forest, Brazil. Conserv Genet https://doi.org/10.1007/s10592-015-0740-2
Soares LASS, Cazetta E, Santos LR, França DS, Gaiotto FA (2019). Anthropogenic disturbances eroding the genetic diversity of a threatened palm tree: a multiscale approach. Front Genet https://doi.org/10.3389/fgene.2019.01090
Szpiecha ZA, Rosenberga NA (2011) On the size distribution of private microsatellite alleles. Theor Popul Biol https://doi.org/10.1016/j.tpb.2011.03.006
Thomé MTC, Zamudio KR, Giovanelli JGR, Haddad CFB, Baldissera Jr FA, Alexandrino J (2010) Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest Mol Phylogenet Evol https://doi.org/10.1016/j.ympev.2010.02.003
Turchetto-Zolet AC, Pinheiro F, Salgueiro F, Palma-Silva C (2013) Phylogeographical patterns shed light on evolutionary process in South America. Mol Ecol https://doi.org/10.1111/mec.12323
Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes https://doi.org/10.1111/j.1471-8286.2004.00684.x
Wilson GA, Rannala B (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics https://doi.org/10.1093/genetics/163.3.1177
Zurbuchen A, Landert L, Klaiber J, Müller A, Hein S, Dorn S (2010) Maximum foraging ranges in solitary bees: only few individuals have the capability to cover long foraging distances. Conserv Biol https://doi.org/10.1016/j.biocon.2009.12.003
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