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Deep-sea shipwrecks represent island-like ecosystems for marine microbiomes

  • 1.

    Anderson RE, Sogin ML, Baross JA. Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents. FEMS Microbiol Ecol. 2015;91:1–11.

    Article 

    Google Scholar 

  • 2.

    Galand PE, Casamayor EO, Kirchman DL, Lovejoy C. Ecology of the rare microbial biosphere of the Arctic Ocean. Proc Natl Acad Sci USA. 2009;106:22427–32.

    CAS 
    Article 

    Google Scholar 

  • 3.

    Hanson CA, Fuhrman JA, Horner-Devine MC, Martiny JBH. Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol. 2012;10:497–506.

    CAS 
    Article 

    Google Scholar 

  • 4.

    Lindstrom ES, Langenheder S. Local and regional factors influencing bacterial community assembly. Env Microbiol Rep. 2012;4:1–9.

    Article 

    Google Scholar 

  • 5.

    Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, Green JL, et al. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol. 2006;4:102–12.

    CAS 
    Article 

    Google Scholar 

  • 6.

    Ramette A, Tiedje JM. Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution. Micro Ecol. 2007;53:197–207.

    Article 

    Google Scholar 

  • 7.

    Teittinen A, Soininen J. Testing the theory of island biogeography for microorganisms-patterns for spring diatoms. Aquat Micro Ecol. 2015;75:239–50.

    Article 

    Google Scholar 

  • 8.

    Salazar G, Cornejo-Castillo FM, Benitez-Barrios V, Fraile-Nuez E, Alvarez-Salgado XA, Duarte CM, et al. Global diversity and biogeography of deep-sea pelagic prokaryotes. ISME J. 2016;10:596–608.

    Article 

    Google Scholar 

  • 9.

    Longhurst AR. Chapter 1 – Toward an ecological geography of the sea. Ecological Geography of the Sea, 2nd ed. Burlington: Academic Press; 2007. p. 1–17.

  • 10.

    Duchinski K, Moyer CL, Hager K, Fullerton H. Fine-scale biogeography and the inference of ecological interactions among neutrophilic iron-oxidizing Zetaproteobacteria as determined by a rule-based microbial network. Front Microbiol. 2019;10:1–11.

    Article 

    Google Scholar 

  • 11.

    Inagaki F, Nunoura T, Nakagawa S, Teske A, Lever M, Lauer A, et al. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin. Proc Natl Acad Sci USA. 2006;103:2815–20.

    CAS 
    Article 

    Google Scholar 

  • 12.

    Ruff SE, Biddle JF, Teske AP, Knittel K, Boetius A, Ramette A. Global dispersion and local diversification of the methane seep microbiome. Proc Natl Acad Sci USA. 2015;112:4015–20.

    CAS 
    Article 

    Google Scholar 

  • 13.

    Meyer KS. Chapter One – Islands in a sea of mud: Insights from terrestrial island theory for community assembly on insular marine substrata. In: Curry BE, editor. Advances in Marine Biology. 76: Cambridge, Massachusetts: Academic Press; 2017. p. 1–40.

  • 14.

    Paul WS, Amy DA, Gregory SB. Expansion of coral communities within the Northern Gulf of Mexico via offshore oil and gas platforms. Mar Ecol Prog Ser. 2004;280:129–43.

    Article 

    Google Scholar 

  • 15.

    Perkol-Finkel S, Benayahu Y. Recruitment of benthic organisms onto a planned artificial reef: shifts in community structure one decade post-deployment. Mar Environ Res. 2005;59:79–99.

    CAS 
    Article 

    Google Scholar 

  • 16.

    Perkol-Finkel S, Shashar N, Barneah O, Ben-David-Zaslow R, Oren U, Reichart T, et al. Fouling reefal communities on artificial reefs: does age matter? Biofouling. 2005;21:127–40.

    CAS 
    Article 

    Google Scholar 

  • 17.

    Svane I, Petersen JK. On the problems of epibioses, fouling and artificial reefs, a review. Mar Ecol. 2001;22:169–88.

    Article 

    Google Scholar 

  • 18.

    Meyer-Kaiser K, Brooke SD, Sweetman A, Wolf M, Young C. Invertebrate communities on historical shipwrecks in the western Atlantic: relation to islands. Mar Ecol Prog Ser. 2017;566:17–29.

    Article 

    Google Scholar 

  • 19.

    Macarthur RH, Wilson EO, Wilson EO. The theory of island biogeography. Revised ed: Princeton, New Jersey: Princeton University Press; 1967.

  • 20.

    Losos JB, Ricklefs RE, MacArthur RH. The theory of island biogeography revisited. Princeton: Princeton University Press; 2010. xvi, 476 p.

  • 21.

    Stieglitz TC. Habitat engineering by decadal-scale bioturbation around shipwrecks on the Great Barrier Reef mid-shelf. Mar Ecol Prog Ser. 2013;477:29–40.

    Article 

    Google Scholar 

  • 22.

    Hamdan LJ, Salerno JL, Reed A, Joye SB, Damour M. The impact of the Deepwater Horizon blowout on historic shipwreck-associated sediment microbiomes in the northern Gulf of Mexico. Sci Rep. 2018;8:9057.

    Article 

    Google Scholar 

  • 23.

    Church R, Warren D, Cullimore R, Johnston L, Schroeder WW, Patterson W, et al. Archaeological and biological analysis of World War II shipwrecks in the Gulf of Mexico: Artifical reef effect in deep water. New Orleans, LA: U.S. Department of the Interior; 2007. Report No.: MMS 2007-015.

  • 24.

    Mugge RL, Brock ML, Salerno JL, Damour M, Church RA, Lee JS, et al. Deep-sea biofilms, historic shipwreck preservation and the Deepwater Horizon spill. Front Marine Sci. 2019;6:1–17.

    Article 

    Google Scholar 

  • 25.

    Comeau AM, Li WK, Tremblay JE, Carmack EC, Lovejoy C. Arctic Ocean microbial community structure before and after the 2007 record sea ice minimum. Plos One. 2011;6:e27492.

    CAS 
    Article 

    Google Scholar 

  • 26.

    Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019;37:852–7.

    CAS 
    Article 

    Google Scholar 

  • 27.

    Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13:581–3.

    CAS 
    Article 

    Google Scholar 

  • 28.

    Leibold MA, Holyoak M, Mouquet N, Amarasekare P, Chase JM, Hoopes MF, et al. The metacommunity concept: a framework for multi-scale community ecology. Ecol Lett. 2004;7:601–13.

    Article 

    Google Scholar 

  • 29.

    Levin LA, Baco AR, Bowden DA, Colaco A, Cordes EE, Cunha MR, et al. Hydrothermal vents and methane seeps: rethinking the sphere of influence. Front Mar Sci. 2016;3:1–23.

    Article 

    Google Scholar 

  • 30.

    Goffredi SK, Orphan VJ. Bacterial community shifts in taxa and diversity in response to localized organic loading in the deep sea. Environ Microbiol. 2010;12:344–63.

    CAS 
    Article 

    Google Scholar 

  • 31.

    Smith CR, Baco-Taylor A. Ecology of whale falls at the deep-sea floor. Oceanography and marine biology: an annual review. London: Abredeen University Press; 2003.

  • 32.

    Smith C, Baco-Taylor A, Glover A. Faunal succession on replicate deep-sea whale falls: time scales and vent-seep affinities. Cah Biol Mar. 2002;43:293–7.

    Google Scholar 

  • 33.

    Grupe BM, Krach ML, Pasulka AL, Maloney JM, Levin LA, Frieder CA. Methane seep ecosystem functions and services from a recently discovered southern California seep. Mar Ecol. 2015;36:91–108.

    CAS 
    Article 

    Google Scholar 

  • 34.

    Harris PT. Shelf and deep-sea sedimentary environments and physical benthic disturbance regimes: a review and synthesis. Mar Geol. 2014;353:169–84.

    Article 

    Google Scholar 

  • 35.

    Damour M, Church R, Warren D, Horrell C, Hamdan LJ. Gulf of Mexico Shipwreck Corrosion, Hydrocarbon Exposure, Microbiology, and Archaeology (GOM-SCHEMA) Project: studying the effects of a major oil spill on submerged cultural resources. In 2015 Society for Historical Archaeology Annual Conference Proceedings; Seattle, WA: Society for Historical Archaeology; 2016. p. 51–61.

  • 36.

    BOEM. Bureau of Ocean Energy Management Data Center BOEM; 2020. https://www.data.boem.gov/.

  • 37.

    BSEE. Bureau of Safety and Environmental Enforcement (BSEE): Gulf of Mexico OCS Region Facts. New Orleans, Louisiana: Bureau of Safety and Environmental Enforcement; 2020.

  • 38.

    Costello MJ, Tsai P, Wong PS, Cheung AKL, Basher Z, Chaudhary C. Marine biogeographic realms and species endemicity. Nat Commun. 2017;8:1057.

    Article 

    Google Scholar 


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