Bardgett, R. D. Plant-soil interactions in a changing world. F1000 Biol. Rep. 3, 16 (2011).
Google Scholar
Faure, D., Vereecke, D. & Leveau, J. H. Molecular communication in the rhizosphere. Plant Soil 321, 279–303 (2009).
Google Scholar
de Zelicourt, A., Al-Yousif, M. & Hirt, H. Rhizosphere microbes as essential partners for plant stress tolerance. Mol. Plant 6, 242–245 (2013).
Google Scholar
Reynolds, H. L., Packer, A., Bever, J. D. & Clay, K. Grassroots ecology: plant–microbe–soil interactions as drivers of plant community structure and dynamics. Ecology 84, 2281–2291 (2003).
Google Scholar
Jones, P., Garcia, B., Furches, A., Tuskan, G. & Jacobson, D. Plant host-associated mechanisms for microbial selection. Front. Plant Sci. 10, 862 (2019).
Google Scholar
de Vries, F. T. et al. Changes in root‐exudate‐induced respiration reveal a novel mechanism through which drought affects ecosystem carbon cycling. N. Phytol. 224, 132–145 (2019).
Google Scholar
Dodd, I. C., Zinovkina, N. Y., Safronova, V. I. & Belimov, A. A. Rhizobacterial mediation of plant hormone status. Ann. Appl. Biol. 157, 361–379 (2010).
Google Scholar
Egamberdieva, D., Wirth, S. J., Alqarawi, A. A., Abd-Allah, E. F. & Hashem, A. Phytohormones and beneficial microbes: essential components for plants to balance stress and fitness. Front. Microbiol. 8, 2104 (2017).
Google Scholar
Xu, L. & Coleman-Derr, D. Causes and consequences of a conserved bacterial root microbiome response to drought stress. Curr. Opin. Microbiol. 49, 1–6 (2019).
Google Scholar
Naylor, D. & Coleman-Derr, D. Drought stress and root-associated bacterial communities. Front. Plant Sci. 8, 2223 (2018).
Google Scholar
Wittenmeyer, L. & Merbach, W. Plant responses to drought and phosphorus deficiency: contribution of phytohormones in root-related processes. J. Plant Nutr. Soil Sci. 168, 531–540 (2005).
Google Scholar
Borghi, L., Kang, J., Ko, D., Lee, Y. & Martinoia, E. The role of ABCG-type ABC transporters in phytohormone transport. Biochem. Soc. Trans. 43, 924–930 (2015).
Google Scholar
Gargallo-Garriga, A. et al. Root exudate metabolomes change under drought and show limited capacity for recovery. Sci. Rep. 8, 1–15 (2018).
Google Scholar
Hamer, U. & Marschner, B. Priming effects in different soil types induced by fructose, alanine, oxalic acid and catechol additions. Soil Biol. Biochem. 37, 445–454 (2005).
Google Scholar
Mondini, C., Cayuela, M. L., Sanchez-Monedero, M. A., Roig, A. & Brookes, P. C. Soil microbial biomass activation by trace amounts of readily available substrate. Biol. Fertil. Soils 42, 542–549 (2006).
Google Scholar
Hu, L. et al. Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. Nat. Commun. 9, 1–13 (2018).
Google Scholar
Fahad, S. et al. Potential role of phytohormones and plant growth-promoting rhizobacteria in abiotic stresses: consequences for changing environment. Environ. Sci. Pollut. Res. 22, 4907–4921 (2015).
Google Scholar
Speirs, J., Binney, A., Collins, M., Edwards, E. & Loveys, B. Expression of ABA synthesis and metabolism genes under different irrigation strategies and atmospheric VPDs is associated with stomatal conductance in grapevine (Vitis vinifera L. cv Cabernet Sauvignon). J. Exp. Bot. 64, 1907–1916 (2013).
Google Scholar
McAdam, S. A., Brodribb, T. J. & Ross, J. J. Shoot‐derived abscisic acid promotes root growth. Plant Cell Environ. 39, 652–659 (2016).
Google Scholar
Ibort, P., Molina, S., Ruiz-Lozano, J. M. & Aroca, R. Molecular insights into the involvement of a never ripe receptor in the interaction between two beneficial soil bacteria and tomato plants under well-watered and drought conditions. Mol. Plant Microbe Interact. 31, 633–650 (2018).
Google Scholar
Timmusk, S. et al. Bacterial distribution in the rhizosphere of wild barley under contrasting microclimates. PLoS ONE 6, e17968 (2011).
Google Scholar
Ghosh, D., Gupta, A. & Mohapatra, S. Dynamics of endogenous hormone regulation in plants by phytohormone secreting rhizobacteria under water-stress. Symbiosis 77, 265–278 (2019).
Google Scholar
Carvalhais, L. C., Dennis, P. G. & Schenk, P. M. Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix. Appl. Soil Ecol. 84, 1–5 (2014).
Google Scholar
Olds, C. L., Glennon, E. K. & Luckhart, S. Abscisic acid: new perspectives on an ancient universal stress signaling molecule. Microbes Infect. 20, 484–492 (2018).
Google Scholar
Hartung, W., Sauter, A., Turner, N. C., Fillery, I. & Heilmeier, H. Abscisic acid in soils: what is its function and which factors and mechanisms influence its concentration? Plant Soil 184, 105–110 (1996).
Google Scholar
Belimov, A. A. et al. Abscisic acid metabolizing rhizobacteria decrease ABA concentrations in planta and alter plant growth. Plant Physiol. Biochem. 74, 84–91 (2014).
Google Scholar
Glick, B. R., Penrose, D. M. & Li, J. P. A model for the lowering of plant ethylene concentrations by plant growth-promoting rhizobacteria. J. Theor. Biol. 190, 63–68 (1998).
Google Scholar
Kazan, K. Diverse roles of jasmonates and ethylene in abiotic stress tolerance. Trends Plant Sci. 20, 219–229 (2015).
Google Scholar
de Ollas, C. & Dodd, I. C. Physiological impacts of ABA–JA interactions under water-limitation. Plant Mol. Biol. 91, 641–650 (2016).
Google Scholar
Carvalhais, L. C. et al. Linking jasmonic acid signaling, root exudates, and rhizosphere microbiomes. Mol. Plant Microbe Interact. 28, 1049–1058 (2015).
Google Scholar
Ngumbi, E. & Kloepper, J. Bacterial-mediated drought tolerance: current and future prospects. Appl. Soil Ecol. 105, 109–125 (2016).
Google Scholar
Vurukonda, S. S. K. P., Vardharajula, S., Shrivastava, M. & SkZ, A. Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria. Microbiol. Res. 184, 13–24 (2016).
Google Scholar
Kudoyarova, G. et al. Phytohormone mediation of interactions between plants and non-symbiotic growth promoting bacteria under edaphic stresses. Front. Plant Sci. 10, 1368 (2019).
Google Scholar
Wallenstein, M. D. & Hall, E. K. A trait-based framework for predicting when and where microbial adaptation to climate change will affect ecosystem functioning. Biogeochemistry 109, 35–47 (2012).
Google Scholar
Martiny, J. B. et al. Microbial legacies alter decomposition in response to simulated global change. ISME J. 11, 490–499 (2017).
Google Scholar
Grime, J. P. et al. The response of two contrasting limestone grasslands to simulated climate change. Science 289, 762–765 (2000).
Google Scholar
Fridley, J. D., Lynn, J. S., Grime, J. P. & Askew, A. P. Longer growing seasons shift grassland vegetation towards more-productive species. Nat. Clim. Change 6, 865–868 (2016).
Google Scholar
Sayer, E. J. et al. Links between soil microbial communities and plant traits in a species‐rich grassland under long‐term climate change. Ecol. Evol. 7, 855–862 (2017).
Google Scholar
Trinder, S., Askew, A. P. & Whitlock, R. Climate‐driven evolutionary change in reproductive and early‐acting life‐history traits in the perennial grass Festuca ovina. J. Ecol. 108, 1398–1410 (2020).
Google Scholar
Fridley, J. D., Grime, J. P., Askew, A. P., Moser, B. & Stevens, C. J. Soil heterogeneity buffers community response to climate change in species‐rich grassland. Glob. Change Biol. 17, 2002–2011 (2011).
Google Scholar
Schimel, J., Balser, T. C. & Wallenstein, M. Microbial stress‐response physiology and its implications for ecosystem function. Ecology 88, 1386–1394 (2007).
Google Scholar
Kuzyakov, Y., Friedel, J. K. & Stahr, K. Review of mechanisms and quantification of priming effects. Soil Biol. Biochem. 32, 1485–1498 (2000).
Google Scholar
Keiluweit, M. et al. Mineral protection of soil carbon counteracted by root exudates. Nat. Clim. Change 5, 588–595 (2015).
Google Scholar
Chanclud, E. & Morel, J. B. Plant hormones: a fungal point of view. Mol. Plant Pathol. 17, 1289–1297 (2016).
Google Scholar
Sembdner, G. A. P. B. & Parthier, B. The biochemistry and the physiological and molecular actions of jasmonates. Annu. Rev. Plant Biol. 44, 569–589 (1993).
Google Scholar
Eng, F. et al. Jasmonic acid biosynthesis by fungi: derivatives, first evidence on biochemical pathways and culture conditions for production. PeerJ 9, e10873 (2021).
Google Scholar
Fuchslueger, L. et al. Drought history affects grassland plant and microbial carbon turnover during and after a subsequent drought event. J. Ecol. 104, 1453–1465 (2016).
Google Scholar
Schimel, J. P. Life in dry soils: effects of drought on soil microbial communities and processes. Annu. Rev. Ecol. Evol. Syst. 49, 409–432 (2018).
Google Scholar
Waring, B. G., Averill, C. & Hawkes, C. V. Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models. Ecol. Lett. 16, 887–894 (2013).
Google Scholar
Staddon, P. L. et al. Mycorrhizal fungal abundance is affected by long‐term climatic manipulations in the field. Glob. Change Biol. 9, 186–194 (2003).
Google Scholar
Van Gestel, M., Merckx, R. & Vlassak, K. Microbial biomass responses to soil drying and rewetting: the fate of fast-and slow-growing microorganisms in soils from different climates. Soil Biol. Biochem. 25, 109–123 (1993).
Google Scholar
Belimov, A. A. et al. Rhizosphere bacteria containing ACC deaminase increase yield of plants grown in drying soil via both local and systemic hormone signalling. N. Phytol. 181, 413–423 (2009).
Google Scholar
Lennon, J. T. & Jones, S. E. Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat. Rev. Microbiol. 9, 119–130 (2011).
Google Scholar
Chodak, M., Gołębiewski, M., Morawska-Płoskonka, J., Kuduk, K. & Niklińska, M. Soil chemical properties affect the reaction of forest soil bacteria to drought and rewetting stress. Ann. Microbiol. 65, 1627–1637 (2015).
Google Scholar
Kakumanu, M. L., Ma, L. & Williams, M. A. Drought-induced soil microbial amino acid and polysaccharide change and their implications for C-N cycles in a climate change world. Sci. Rep. 9, 1–12 (2019).
Google Scholar
Puertolas, J., Alcobendas, R., Alarcón, J. J. & Dodd, I. C. Long‐distance abscisic acid signalling under different vertical soil moisture gradients depends on bulk root water potential and average soil water content in the root zone. Plant Cell Environ. 36, 1465–1475 (2013).
Google Scholar
Axtell, C. A. & Beattie, G. A. Construction and characterization of a proU-gfp transcriptional fusion that measures water availability in a microbial habitat. Appl. Environ. Microbiol. 68, 4604–4612 (2002).
Google Scholar
Wesener, F. & Tietjen, B. Primed to be strong, primed to be fast: modeling benefits of microbial stress responses. FEMS Microbiol. Ecol. 95, 114 (2019).
Google Scholar
Andrade‐Linares, D. R., Lehmann, A. & Rillig, M. C. Microbial stress priming: a meta‐analysis. Environ. Microbiol. 18, 1277–1288 (2016).
Google Scholar
Grime, J. P. et al. Long-term resistance to simulated climate change in an infertile grassland. Proc. Natl Acad. Sci. USA 105, 10028–10032 (2008).
Google Scholar
Giannetta, B., Plaza, C., Zaccone, C., Vischetti, C. & Rovira, P. Ecosystem type effects on the stabilization of organic matter in soils: combining size fractionation with sequential chemical extractions. Geoderma 353, 423–434 (2019).
Google Scholar
Campbell, C. D., Chapman, S. J., Cameron, C. M., Davidson, M. S. & Potts, J. M. A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil. Appl. Environ. Microbiol. 69, 3593–3599 (2003).
Google Scholar
Tworkoski, T., Wisniewski, M. & Artlip, T. Application of BABA and s-ABA for drought resistance in apple. J. Appl. Hortic. 13, 95–90 (2011).
Google Scholar
Rohwer, C. L. & Erwin, J. E. Horticultural applications of jasmonates: a review. J. Hortic. Sci. Biotechnol. 83, 283–304 (2008).
Google Scholar
Creamer, R. E. et al. An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method consistency in soil monitoring. Biol. Fertil. Soils 45, 623–633 (2009).
Google Scholar
Stott, D. E. Recommended Soil Health Indicators and Associated Laboratory Procedures. Soil Health Technical Note No. 450-03. (U.S. Department of Agriculture, Natural Resources Conservation Service, 2019).
Buyer, J. S. & Sasser, M. High throughput phospholipid fatty acid analysis of soils. Appl. Soil Ecol. 61, 127–130 (2012).
Google Scholar
Bardgett, R. D. & McAlister, E. The measurement of soil fungal: bacterial biomass ratios as an indicator of ecosystem self-regulation in temperate meadow grasslands. Biol. Fertil. Soils 29, 282–290 (1999).
Google Scholar
Bardgett, R. D., Hobbs, P. J. & Frostegård, Å. Changes in soil fungal: bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biol. Fertil. Soils 22, 261–264 (1996).
Google Scholar
Zhu, Z. et al. Fate of rice shoot and root residues, rhizodeposits, and microbial assimilated carbon in paddy soil-part 2: turnover and microbial utilization. Plant Soil 416, 243–257 (2017).
Google Scholar
R Core Team. R: A Language and Environment for Statistical Computing, https://www.R-project.org/ (R Foundation for Statistical Computing, 2019).
Bates, D. M., Mächler, M., Bolker, B. & Walker, S. Fitting linear mixed-effects models using lme4. J. Stat. Softw. 67, 1–48 (2014).
Cohen, J. The effect size index: d. Stat. Power Anal. Behav. Sci. 2, 284–288 (1988).
Anderson, T. H. & Domsch, A. K. The metabolic quotient for CO2 (qCO2) as a specific activity parameter to assess the effects of environmental conditions, such as pH, on the microbial biomass of forest soils. Soil Biol. Biochem. 25, 393–395 (1993).
Google Scholar
Pinheiro, J.C., Bates, D.M. Mixed-Effects Models in S and S-PLUS (Springer, 2000).
Kuznetsova, A., Brockhoff, P. B. & Christensen, R. H. B. lmerTest package: tests in linear mixed effects models. J. Stat. Softw. 82, 13 (2017).
Google Scholar
Sayer, E. J. et al. Data from: Adaptation to chronic drought modifies soil microbial community responses to phytohormones. figshare https://doi.org/10.6084/m9.figshare.14130065 (2021).
Source: Ecology - nature.com