Jones, H. P. et al. Invasive mammal eradication on islands results in substantial conservation gains. Proc. Natl Acad. Sci. USA 113, 4033–4038 (2016).
Google Scholar
DIISE. The database of island invasive species eradications, developed by island conservation, coastal conservation action laboratory UCSC, IUCN SSC Invasive Species Specialist Group. http://diise.islandconservation.org (2020).
Doherty, T. S., Glen, A. S., Nimmo, D. G., Ritchie, E. G. & Dickman, C. R. Invasive predators and global biodiversity loss. Proc. Natl Acad. Sci. USA 113, 11261–11265 (2016).
Google Scholar
Simberloff, D. et al. Yes we can! Exciting progress and prospects for controlling invasives on islands and beyond. West. North Am. Nat. 78, 942 (2018).
Kappes, P. J., Bond, A. L., Russell, J. C. & Wanless, R. M. Diagnosing and responding to causes of failure to eradicate invasive rodents. Biol. Invasions 21, 2247–2254 (2019).
Browett, S. S., O’Meara, D. B. & McDevitt, A. D. Genetic tools in the management of invasive mammals: recent trends and future perspectives. Mammal. Rev. 50, 200–210 (2020).
Burgess, B. T., Irvine, R. L., Howald, G. R. & Russello, M. A. The promise of genetics and genomics for improving invasive mammal management on islands. Front. Ecol. Evol. 9, 704809 (2021).
Abdelkrim, J., Pascal, M., Calmet, C. & Samadi, S. Importance of assessing population genetic structure before eradication of invasive species: examples from insular Norway rat populations. Conserv. Biol. 19, 1509–1518 (2005).
Adams, A. L., van Heezik, Y., Dickinson, K. J. M. & Robertson, B. C. Identifying eradication units in an invasive mammalian pest species. Biol. Invasions 16, 1481–1496 (2014).
Sjodin, B. M. F., Irvine, R. L., Ford, A. T., Howald, G. R. & Russello, M. A. Rattus population genomics across the Haida Gwaii archipelago provides a framework for guiding invasive species management. Evol. Appl. 13, 889–904 (2019).
Russello, M. A., Smith-Vidaurre, G. & Wright, T. F. In Naturalized Parrots of the World: Distribution, Ecology, and Impacts of the World’s Most Colorful Colonizers (ed. Pruett-Jones, S.) Ch. 4 (Princeton Univ. Press, 2021).
Russell, J. C. et al. Survivors or reinvaders? Using genetic assignment to identify invasive pests following eradication. Biol. Invasions 12, 1747–1757 (2010).
Amos, W., Nichols, H. J., Churchyard, T. & Brooke, MdeL. Rat eradication comes within a whisker! A case study of a failed project from the South Pacific. R. Soc. Open Sci. 3, 160110 (2016).
Google Scholar
Sjodin, B. M. F., Puckett, E. E., Irvine, R. L., Munshi-South, J. & Russello, M. A. Global origins of invasive brown rats (Rattus norvegicus) in the Haida Gwaii archipelago. Biol. Invasions 23, 611–623 (2021).
Gaston, A. J., Golumbia, T., Martin, J.-L. & Sharpe, S. Lessons from the islands: introduced species and what they tell us about how ecosystems work. In Proc. from the Research Group on Introduced Species 2002 Symposium 103–116 (Canadian Wildlife Society, 2008).
Parks Canada. Gwaii Haanas National Park Reserve, National Marine Conservation Area Reserve, and Haida Heritage Site. https://www.pc.gc.ca/en/pn-np/bc/gwaiihaanas/nature/faune-wildlife (2019).
Stockton, S. A., Allombert, S., Gaston, A. J. & Martin, J.-L. A natural experiment on the effects of high deer densities on the native flora of coastal temperate rain forests. Biol. Conserv. 126, 118–128 (2005).
Allombert, S., Stockton, S. & Martin, J.-L. A natural experiment on the impact of overabundant deer on forest invertebrates. Conserv. Biol. 19, 1917–1929 (2005).
Allombert, S., Gaston, A. J. & Martin, J.-L. A natural experiment on the impact of overabundant deer on songbird populations. Biol. Conserv. 126, 1–13 (2005).
Chollet, S., Maillard, M., Schörghuber, J., Grayston, S. J. & Martin, J. Deer slow down litter decomposition by reducing litter quality in a temperate forest. Ecology 102, e03235 (2021).
Deagle, G. Traditional west coast native medicine. Can. Fam. Physician 34, 4 (1988).
Bellis, K. X. T., Peet, R. T., Irvine, R. L., Howald, G. & Alsop, G. J. In Island Invasives: Scaling up to Meet the Challenge Ch. 3 (eds Veitch, C. R., Clout, M. N., Russell, J. C. & West, C. J.) 494–496 (IUCN, 2019).
Stroh, N., Baltzinger, C. & Martin, J.-L. Deer prevent western redcedar (Thuya plicata) regeneration in old-growth forests of Haida Gwaii: Is there a potential for recovery? Ecol. Manag 255, 3973–3979 (2008).
MacArthur, R. H. & Wilson, E. O. An equilibrium theory of insular zoogeography. Evolution 17, 373–387 (1963).
Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. & Cresko, W. A. Stacks: an analysis tool set for population genomics. Mol. Ecol. 22, 3124–3140 (2013).
Google Scholar
Foll, M. & Gaggiotti, O. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180, 977–993 (2008).
Google Scholar
Pritchard, J. K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000).
Google Scholar
Excoffier, L., Smouse, P. E. & Quattro, J. M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479–491 (1992).
Google Scholar
Wilson, G. A. & Rannala, B. Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163, 1177–1191 (2003).
Google Scholar
Mussmann, S. M., Douglas, M. R., Chafin, T. K. & Douglas, M. E. BA3‐SNPs: contemporary migration reconfigured in BayesAss for next‐generation sequence data. Methods Ecol. Evol. 10, 1808–1813 (2019).
Loiselle, B. A., Sork, V. L., Nason, J. & Graham, C. Spatial genetic structure of a tropical understory shrub Psychotria officinalis (Rubiaceae). Am. J. Bot. 82, 1420 (1995).
Weir, B. S. & Cockerham, C. C. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358–1370 (1984).
Google Scholar
Goudet, J. Hierfstat, a package for r to compute and test hierarchical F-statistics. Mol. Ecol. Notes 5, 184–186 (2005).
Bellard, C., Cassey, P. & Blackburn, T. M. Alien species as a driver of recent extinctions. Biol. Lett. 12, 20150623 (2016).
Google Scholar
Robinette, W. L. Mule deer home range and dispersal in Utah. J. Wildl. Manag 30, 335 (1966).
Bunnell, F. L. & Harestad, A. S. Dispersal and dispersion of black-tailed deer: models and observations. J. Mammal. 64, 201–209 (1983).
Anderson, A. & Wallmo, O. Odocoileus hemionus. Am. Soc. Mammal. 219, 1–9 (1984).
Quigley, D. T. G. & Moffatt, S. Sika-like deer Cervus nippon Temminck, 1838 observed swimming out to sea at Greystones, Co. Wicklow: Increasing deer population pressure? Bull. Ir. Biogeogr. Soc. 38, 251–262 (2014).
Colson, K. E., Brinkman, T. J., Person, D. K. & Hundertmark, K. J. Fine-scale social and spatial genetic structure in Sitka black-tailed deer. Conserv. Genet. 14, 439–449 (2013).
Powell, J. H. et al. Microsatellites indicate minimal barriers to mule deer Odocoileus hemionus dispersal across Montana, USA. Wildl. Biol. 19, 102–110 (2013).
Dolman, P. M. & Wäber, K. Ecosystem and competition impacts of introduced deer. Wildl. Res. 35, 202 (2008).
Edge, K.-A., Crouchley, D., McMurtrie, P., Willans, M. J. & Byrom, A. In Island Invasives: Eradication and Management (eds Veitch, C. R., Clout, M. N. & Towns, D. R.) 166–171 (IUCN, 2011).
Hess, S. C., Muise, J. & Schipper, J. Anatomy of an eradication effort: removing Hawaii’s illegally introduced axis deer. Wildl. Prof. 9, 26–29 (2015).
Masters, P., Markopoulos, N., Florance, B. & Southgate, R. The eradication of fallow deer (Dama dama) and feral goats (Capra hircus) from Kangaroo Island, South Australia. Australas. J. Environ. Manag. 25, 86–98 (2018).
Macdonald, N., Nugent, G., Edge, K.-A. & Parkes, J. P. In Island Invasives: Scaling up to Meet the Challenge Ch. 2 (eds Veitch, C. R., Clout, M. N., Russell, J. C. & West, C. J.) 256–260 (IUCN, 2019).
Keitt, B. et al. In Island Invasives: Eradication and Management (eds Veitch, C. R., Clout, M. N. & Towns, D. R.) 74–77 (IUCN, 2011).
Gerber, L. R. Conservation triage or injurious neglect in endangered species recovery. Proc. Natl Acad. Sci. USA 113, 3563–3566 (2016).
Google Scholar
Baird, N. A. et al. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE 3, e3376 (2008).
Google Scholar
Lemay, M. A. & Russello, M. A. Genetic evidence for ecological divergence in kokanee salmon. Mol. Ecol. 24, 798–811 (2015).
Google Scholar
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754–1760 (2009).
Google Scholar
Rochette, N. C. & Catchen, J. M. Deriving genotypes from RAD-seq short-read data using Stacks. Nat. Protoc. 12, 2640–2659 (2017).
Google Scholar
Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156–2158 (2011).
Google Scholar
Beaumont, M. A. & Balding, D. J. Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13, 969–980 (2004).
Google Scholar
Lischer, H. E. L. & Excoffier, L. PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics 28, 298–299 (2012).
Google Scholar
Meirmans, P. G. & Tienderen, Van, P. H. Genotype and Genodive: two programs for the analysis of genetic diversity of asexual organisms. Mol. Ecol. Notes 4, 792–794 (2004).
Zheng, X. et al. A high-performance computing toolset for relatedness and principal component analysis of SNP data. Bioinformatics 28, 3326–3328 (2012).
Google Scholar
Wickham, H. ggplot2: Elegant Graphics for Data Analysis (Springer, 2016).
Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software structure: a simulation study. Mol. Ecol. 14, 2611–2620 (2005).
Google Scholar
Rosenberg, N. A. distruct: a program for the graphical display of population structure: PROGRAM NOTE. Mol. Ecol. Notes 4, 137–138 (2004).
Vekemans, X. & Hardy, O. J. New insights from fine-scale spatial genetic structure analyses in plant populations. Mol. Ecol. 13, 921–935 (2004).
Google Scholar
Burgess, B. T., Irvine, R. L. & Russello, M. A. Population genomics of Sitka black-tailed deer supports invasive species management and ecological restoration on islands. Dryad https://doi.org/10.5061/dryad.q2bvq83mq (2022).
Source: Ecology - nature.com
