Wei, Z. L., Liu, X., Feng, T. & Chang, Y. Q. Novel and conserved micrornas in Dalian purple urchin (Strongylocentrotus nudus) identified by next generation sequencing. Int. J. Biol. Sci. 7, 180 (2011).
Google Scholar
Sun, Z. H., Zhang, J., Zhang, W. J. & Chang, Y. Q. Gonadal transcriptomic analysis and identification of candidate sex-related genes in Mesocentrotus nudus. Gene 698, 72–81 (2019).
Google Scholar
Willoughby, L. News feature: Can predators have a big impact on carbon emissions calculations?. PNAS 115(10), 2260–2263 (2018).
Google Scholar
Ling, S. D., Kriegisch, N., Woolley, B. & Reeves, S. E. Density dependent feedbacks, hysteresis, and demography of overgrazing sea urchins. Ecology 100(2), e02577 (2019).
Google Scholar
Cirino, P., Ciaravolo, M., Paglialonga, A. & Toscano, A. Long term maintenance of the sea urchin Paracentrotus lividus in culture. Aquac. Rep. 7, 27–33 (2017).
Google Scholar
Brundu, G., Farina, S. & Domenici, P. Going back into the wild: The behavioural effects of raising sea urchins in captivity. Conserv. Physiol. 8(1), 015 (2020).
Google Scholar
Chang, Y., Ding, J., Song, J. & Yang, W. Biology and Aquaculture of Sea Cucumbers and Sea Urchins (Ocean Press, 2004).
Abelson, A. & Denny, M. Settlement of marine organisms in flow. Annu. Rev. Ecol. Syst. 28(1), 317–339 (1997).
Google Scholar
Boxshall, A. J. The importance of flow and settlement cues to larvae of the abalone, Haliotis rufescens Swainson. J. Exp. Mar. Biol. Ecol. 254(2), 143–167 (2000).
Google Scholar
Palardy, J. E. & Witman, J. D. Water flow drives biodiversity by mediating rarity in marine benthic communities: Water flow mediates rarity and diversity. Ecol. Lett. 14(1), 63–68 (2011).
Google Scholar
Fischer-Rousseau, L., Chu, K. P. & Cloutier, R. Developmental plasticity in fish exposed to a water velocity gradient: A complex response. J. Exp. Zool. 314(1), 67–85 (2010).
Google Scholar
Moëzzi, F., Poorbagher, H., Ghadermazi, A., Parvizi, F. & Benam, S. Variation in the shell form of the swanmussel, Anodonta cygnea (Linea, 1876) in response to water current. Int. J. Aquat. Biol. 5(4), 275–281 (2017).
Pan, Y. et al. Influence of flow velocity on motor behavior of sea cucumber Apostichopus japonicus. Physiol. Behav. 144, 52–59 (2015).
Google Scholar
Dumont, C. P., Drolet, D., Deschenes, I. & Himmelman, J. H. Multiple factors explain the covering behaviour in the green sea urchin, Strongylocentrotus droebachiensis. Anim. Behav. 73(6), 979–986 (2007).
Google Scholar
Li, X. J. et al. Effect of flow velocity on the growth, stress and immune responses of turbot (Scophthalmus maximus) in recirculating aquaculture systems. Fish Shellfish Immunol. 86, 1169–1176 (2019).
Google Scholar
Kirby-Smith, W. W. Growth of the bay scallop: The influence of experimental water currents. J. Exp. Mar. Biol. Ecol. 8(1), 7–18 (1972).
Google Scholar
Morse, B. L. & Hunt, H. L. Effect of unidirectional water currents on displacement behaviour of the green sea urchin Strongylocentrous droebachiensis. J. Mar. Biol. Assoc. U. K. 93(7), 1923–1928 (2013).
Google Scholar
Shi, D. T. et al. Effects of flow velocity on fitness related behaviours of the sea urchin Mesocentrotus nudus: New information on stock enhancement. J. Mar. Biol. Assoc. U. K. 100(6), 963–967 (2020).
Google Scholar
Agca, C., Elhajj, M. C., Klein, W. H. & Venuti, J. M. Neurosensory and neuromuscular organization in tube feet of the sea urchin Strongylocentrotus purpuratus. J. Comp. Neurol. 519(17), 3566–3579 (2011).
Google Scholar
Cohen-Rengifo, M., Moureaux, C., Dubois, P. & Flammang, P. Attachment capacity of the sea urchin Paracentrotus lividus in a range of seawater velocities in relation to test morphology and tube foot mechanical properties. Mar. Biol. 164(4), 79 (2017).
Google Scholar
Tuya, F., Cisneros-Aguirre, J., Ortega-Borges, L. & Haroun, R. J. Bathymetric segregation of sea urchins on reefs of the Canarian Archipelago: Role of flow induced forces. Estuar. Coast. Shelf Sci. 73, 481–488 (2007).
Google Scholar
Stewart, H. L. & Britton-Simmons, K. H. Streamlining behaviour of the red urchin Strongylocentrotus franciscanus in response to flow. J. Exp. Biol. 214(16), 2655–2659 (2011).
Google Scholar
Toubarro, D. et al. Cloning, characterization, and expression levels of the nectin gene from the tube feet of the sea urchin Paracentrotus Lividus. Mar. Biotechnol. 18(3), 372–383 (2016).
Google Scholar
Milan, M. et al. Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: Genomic tools for environmental monitoring. BMC Genom. 12, 234 (2011).
Google Scholar
Evans, T. G. et al. Ocean acidification research in the ‘post-genomic’ era: Roadmaps from the purple sea urchin Strongylocentrotus purpuratus. Comp. Biochem. Phys. A. 185, 33–42 (2015).
Google Scholar
Wang, L. K., Feng, Z. X., Wang, X. & Zhang, X. G. DEGseq: An R package for identifying differentially expressed genes from RNA-Seq Data. Bioinformatics 26(1), 136–138 (2010).
Google Scholar
Ding, J. Y. et al. Effects of water temperature on survival, behaviors and growth of the sea urchin Mesocentrotus nudus: New insights into the stock enhancement. Aquaculture 519, 734873 (2019).
Google Scholar
Shi, D. T., Zhao, C., Yin, D. H., Chen, Y. & Chang, Y. Q. Effects of velocity on behaviors and growth of the sea urchin Mesocentrotus nudus. Acta Ecol. Sin. 42(10) (2022) (in Chinese with an English abstract).
Zhao, C. et al. Transcriptomes reveal genes involved in covering and sheltering behaviors of the sea urchin Strongylocentrotus intermedius exposed to UV-B radiation. Ecotoxicol. Environ. Saf. 167, 236–241 (2019).
Google Scholar
Zhan, Y. Y. et al. The impact of chronic heat stress on the growth, survival, feeding, and differential gene expression in the sea urchin Strongylocentrotus intermedius. Front. Genet. 10, 301 (2019).
Google Scholar
Hao, P. F. et al. Gene expression patterns of sea urchins (Strongylocentrotus intermedius) exposed to different combinations of temperature and hypoxia. Comp. Biochem. Physiol. Part D. Cenom. Proteom. 41, 100953 (2022).
Google Scholar
Albarano, L. et al. PAHs and PCBs affect functionally intercorrelated genes in the sea urchin Paracentrotus lividus embryos. Int. J. Mol. Sci. 22, 12498 (2021).
Google Scholar
Láruson, A. J., Coppard, S. E., Pespeni, M. H. & Reed, F. A. Gene expression across tissues, sex, and life stages in the sea urchin Tripneustes gratilla [Toxopneustidae, Odontophora, Camarodonta]. Mar. Genom. 41, 12–18 (2018).
Google Scholar
Xu, Y. Q. Effects of flow velocity on growth, nonspecific immunity and fatty acid composition of juvenile Rhynchocypris lagowskii. Dalian Ocean University, Master Thesis (2020).
Ogata, H. Y. & Oku, H. Effects of water velocity on growth performance of juvenile Japanese flounder Paralichthys olivaceus. J. World Aquac. Soc. 31(2), 225–231 (2000).
Google Scholar
Gao, J., Wang, Y. B., Liu, J. Y., Guo, Y. L. & Fu, S. Y. Transcriptome analysis of Plectropomus leopardus liver under different flow velocity. South China Fish. Sci. 18(1), 107–117 (2022).
Arai, M., Otsu, K., Maclennan, D. H. & Periasamy, M. Regulation of sarcoplasmic reticulum gene expression during cardiac and skeletal muscle development. Am. J. Physiol. 262, C614–C620 (1992).
Google Scholar
Gallagher, P. G., Romana, M., Tse, W. T., Lux, S. E. & Forge, B. G. The human ankyrin-1 gene is selectively transcribed in erythroid cell lines despite the presence of a housekeeping-like promoter. Blood 96(3), 1136–1143 (2000).
Google Scholar
Gallagher, P. G. & Forget, B. G. An alternate promoter directs expression of a truncated, muscle specific isoform of the human Ankyrin-1 gene. J. Biol. Chem. 273(3), 1339–1348 (1997).
Google Scholar
Yi, Y., Li, Z. & Kuipers, O. P. Plant–microbe interaction: transcriptional response of bacillus mycoides to potato root exudates. J. Vis. Exp. 137, e57606 (2018).
Sun, X. et al. Differences between fast and slow muscles in scallops revealed through proteomics and transcriptomics. BMC Genom. 19, 1–13 (2018).
Google Scholar
Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29(7), 644–652 (2011).
Google Scholar
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory efficient alignment of short DNA sequences to the human genome. Genome Biol. 10(3), 25–34 (2009).
Google Scholar
Tatusov, R. T., Koonin, E. V. & Lipman, D. J. A genomic perspective on protein families. Nucleic Acids Res. 28, 33–36 (1997).
Google Scholar
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28(5), 511–515 (2010).
Google Scholar
Turbeville, J., Schulz, J. R. & Raff, R. A. Deuterostome phylogeny and the sister group of the chordates: Evidence from molecules and morphology. Mol. Biol. Evol. 11, 648–655 (1994).
Google Scholar
Vergara-Amado, J., Silva, A. X., Manzi, C., Nespolo, R. F. & Cárdenas, L. Differential expression of stress candidate genes for thermal tolerance in the sea urchin Loxechinus albus. J. Therm. Biol. 68, 104–109 (2017).
Google Scholar
Livak, K. J. & Schmittgen, T. D. Analysis of relative gene expression data using real time quantitative PCR and the 2–ΔΔCT method. Methods 25(4), 402–408 (2001).
Google Scholar
Source: Ecology - nature.com