Berendsen RL, Pieterse CMJ, Bakker PAHM. The rhizosphere microbiome and plant health. Trends Plant Sci. 2012;17:478–86.
Google Scholar
Haas D, Défago G. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat Rev Microbiol. 2005;3:307–19.
Google Scholar
Whipps JM. Microbial interactions and biocontrol in the rhizosphere. J Exp Bot. 2001;52:487–511.
Google Scholar
Mendes R, Kruijt M, De Bruijn I, Dekkers E, Van Der Voort M, Schneider J, et al. Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 2011;332:1097–100.
Google Scholar
Jousset A, Becker J, Chatterjee S, Karlovsky P, Scheu S, Eisenhauer N. Biodiversity and species identity shape the antifungal activity of bacterial communities. Ecology 2014;95:1184–90.
Google Scholar
Becker J, Eisenhauer N, Scheu S, Jousset A. Increasing antagonistic interactions cause bacterial communities to collapse at high diversity. Ecol Lett. 2012;15:468–74.
Google Scholar
Hu J, Wei Z, Friman VP, Gu SH, Wang XF, Eisenhauer N, et al. Probiotic diversity enhances rhizosphere microbiome function and plant disease suppression. mBio. 2016;7:e01790–16.
Google Scholar
Mehrabi Z, McMillan VE, Clark IM, Canning G, Hammond-Kosack KE, Preston G, et al. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Sci Rep. 2016;6:1–10.
Google Scholar
Ma Z, Geudens N, Kieu NP, Sinnaeve D, Ongena M, Martins JC, et al. Biosynthesis, chemical structure, and structure-activity relationship of orfamide lipopeptides produced by Pseudomonas protegens and related species. Front Microbiol. 2016;7:1–16.
Yan Q, Philmus B, Chang JH, Loper JE. Novel mechanism of metabolic co-regulation coordinates the biosynthesis of secondary metabolites in Pseudomonas protegens. Elife 2017;6:e22835.
Google Scholar
Ramette A, Moënne-Loccoz Y, Défago G. Prevalence of fluorescent pseudomonads producing antifungal phloroglucinols and/or hydrogen cyanide in soils naturally suppressive or conducive to tobacco black root rot. FEMS Microbiol Ecol. 2003;44:35–43.
Google Scholar
Raaijmakers JM, Weller DM. Natural Plant Protection by 2,4-Diacetylphloroglucinol-Producing Pseudomonas spp. in Take-All Decline Soils. Mol Plant-Microbe Interact. 1998;11:144–52.
Google Scholar
Murata K, Suenaga M, Kai K. Genome Mining Discovery of Protegenins A–D, Bacterial Polyynes Involved in the Antioomycete and Biocontrol Activities of Pseudomonas protegens. ACS Chem Biol. 2021. https://pubs.acs.org/doi/10.1021/acschembio.1c00276. Online ahead of print.
Achkar J, Xian M, Zhao H, Frost JW. Biosynthesis of Phloroglucinol. J Am Chem Soc. 2005;127:5332–3.
Google Scholar
Bangera MG, Thomashow LS. Identification and Characterization of a Gene Cluster for Synthesis of the Polyketide Antibiotic 2,4-Diacetylphloroglucinol from Pseudomonas fluorescens Q2-87. J Bacteriol. 1999;181:3155–63.
Google Scholar
Bottiglieri M, Keel C. Characterization of PhlG, a hydrolase that specifically degrades the antifungal compound 2,4-diacetylphloroglucinol in the biocontrol agent Pseudomonas fluorescens CHA0. Appl Environ Microbiol. 2006;72:418–27.
Google Scholar
Yan X, Yang R, Zhao R-X, Han J-T, Jia W-J, Li D-Y, et al. Transcriptional Regulator PhlH Modulates 2,4-Diacetylphloroglucinol Biosynthesis in Response to the Biosynthetic Intermediate and End Product. Appl Environ Microbiol. 2017;83:e01419–17.
Google Scholar
Dorrestein PC, Yeh E, Garneau-Tsodikova S, Kelleher NL, Walsh CT. Dichlorination of a pyrrolyl-S-carrier protein by FADH2- dependent halogenase PltA during pyoluteorin biosynthesis. Proc Natl Acad Sci USA. 2005;102:13843–8.
Google Scholar
Thomas MG, Burkart MD, Walsh CT. Conversion of L-proline to pyrrolyl-2-carboxyl-S-PCP during undecylprodigiosin and pyoluteorin biosynthesis. Chem Biol. 2002;9:171–84.
Google Scholar
Schnider-Keel U, Seematter A, Maurhofer M, Blumer C, Duffy B, Gigot-Bonnefoy C, et al. Autoinduction of 2,4-diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate and pyoluteorin. J Bacteriol. 2000;182:1215–25.
Google Scholar
Brodhagen M, Henkels MD, Loper JE. Positive autoregulation and signaling properties of pyoluteorin, an antibiotic produced by the biological control organism Pseudomonas fluorescens Pf-5. Appl Environ Microbiol. 2004;70:1758–66.
Google Scholar
Maurhofer M, Baehler E, Notz R, Martinez V, Keel C. Cross Talk between 2,4-Diacetylphloroglucinol-Producing Biocontrol Pseudomonads on Wheat Roots. Appl Environ Microbiol. 2004;70:1990–8.
Google Scholar
Clifford JC, Buchanan A, Vining O, Kidarsa TA, Chang JH, McPhail KL, et al. Phloroglucinol functions as an intracellular and intercellular chemical messenger influencing gene expression in Pseudomonas protegens. Environ Microbiol. 2016;18:3296–308.
Google Scholar
Kidarsa TA, Goebel NC, Zabriskie TM, Loper JE. Phloroglucinol mediates cross-talk between the pyoluteorin and 2,4-diacetylphloroglucinol biosynthetic pathways in Pseudomonas fluorescens Pf-5. Mol Microbiol. 2011;81:395–414.
Google Scholar
Hassan KA, Johnson A, Shaffer BT, Ren Q, Kidarsa TA, Elbourne LDH, et al. Inactivation of the GacA response regulator in Pseudomonas fluorescens Pf-5 has far-reaching transcriptomic consequences. Environ Microbiol. 2010;12:899–915.
Google Scholar
Dubuis C, Haas D. Cross-species GacA-controlled induction of antibiosis in pseudomonads. Appl Environ Microbiol. 2007;73:650–4.
Google Scholar
Hansen ML, He Z, Wibowo M, Jelsbak L. A Whole-Cell Biosensor for Detection of 2,4- Diacetylphloroglucinol (DAPG)-Producing Bacteria from Grassland Soil. Appl Environ Microbiol. 2021;87:e01400–e01420.
Google Scholar
Hesse C, Schulz F, Bull CT, Shaffer BT, Yan Q, Shapiro N, et al. Genome‐based evolutionary history of Pseudomonas spp. Environ Microbiol. 2018;20:2142–59.
Google Scholar
Lozano-Andrade CN, Strube ML, Kovács ÁT. Complete genome sequences of four soil-derived isolates for studying synthetic bacterial community assembly. Microbiol Resour Announc. 2021;10:e00848–21.
Google Scholar
Le Roux M, Kirkpatrick RL, Montauti EI, Tran BQ, Brook Peterson S, Harding BN, et al. Kin cell lysis is a danger signal that activates antibacterial pathways of Pseudomonas aeruginosa. Elife. 2015;2015:1–65.
Tyc O, van den Berg M, Gerards S, van Veen JA, Raaijmakers JM, de Boer W, et al. Impact of interspecific interactions on antimicrobial activity among soil bacteria. Front Microbiol. 2014;5:1–10.
Qi SS, Bogdanov A, Cnockaert M, Acar T, Ranty-Roby S, Coenye T, et al. Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria. Environ Microbiol. 2021;23:2132–51.
Google Scholar
Cornforth DM, Foster KR. Competition sensing: The social side of bacterial stress responses. Nat Rev Microbiol. 2013;11:285–93.
Google Scholar
LeRoux M, Peterson SB, Mougous JD. Bacterial danger sensing. J Mol Biol. 2015;427:3744–53.
Google Scholar
Westhoff S, van Wezel GP, Rozen DE. Distance-dependent danger responses in bacteria. Curr Opin Microbiol. 2017;36:95–101.
Google Scholar
Davies J, Spiegelman GB, Yim G. The world of subinhibitory antibiotic concentrations. Curr Opin Microbiol. 2006;9:445–53.
Google Scholar
Garbeva P, Silby MW, Raaijmakers JM, Levy SB, Boer WDE. Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors. ISME J. 2011;5:973–85.
Google Scholar
Abrudan MI, Smakman F, Grimbergen AJ, Westhoff S, Miller EL, Van Wezel GP, et al. Socially mediated induction and suppression of antibiosis during bacterial coexistence. Proc Natl Acad Sci USA. 2015;112:11054–9.
Google Scholar
Kehe J, Ortiz A, Kulesa A, Gore J, Blainey PC, Friedman J. Positive interactions are common among culturable bacteria. Sci Adv. 2021;7:1–10.
Google Scholar
Yang KM, Kim JS, Kim HS, Kim YY, Oh JK, Jung HW, et al. Lactobacillus reuteri AN417 cell-free culture supernatant as a novel antibacterial agent targeting oral pathogenic bacteria. Sci Rep. 2021;11:1–16.
Google Scholar
Dubern JF, Lugtenberg BJJ, Bloemberg GV. The ppuI-rsaL-ppuR quorum-sensing system regulates biofilm formation of Pseudomonas putida PCL1445 by controlling biosynthesis of the cyclic lipopeptides putisolvins I and II. J Bacteriol. 2006;188:2898–906.
Google Scholar
Wellington S, Peter Greenberg E. Quorum sensing signal selectivity and the potential for interspecies cross talk. mBio. 2019;10:e00146–19.
Google Scholar
Duffy BK, Défago G. Zinc Improves Biocontrol of Fusarium Crown and Root Rot of Tomato by Pseudomonas fluorescens and Represses the Production of Pathogen Metabolites Inhibitory to Bacterial Antibiotic Biosynthesis. Phytopathology. 1997;87:1250–7.
Google Scholar
Li W, Estrada-de los Santos P, Matthijs S, Xie G-L, Busson R, Cornelis P, et al. Promysalin, a Salicylate-Containing Pseudomonas putida Antibiotic, Promotes Surface Colonization and Selectively Targets Other Pseudomonas. Chem Biol. 2011;18:1320–30.
Google Scholar
Parnell JJ, Berka R, Young HA, Sturino JM, Kang Y, Barnhart DM, et al. From the lab to the farm: An industrial perspective of plant beneficial microorganisms. Front Plant Sci. 2016;7:1–12.
Google Scholar
Berendsen RL, van Verk MC, Stringlis IA, Zamioudis C, Tommassen J, Pieterse CMJ, et al. Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417. BMC Genomics. 2015;16:1–23.
Google Scholar
Niu B, Paulson JN, Zheng X, Kolter R. Simplified and representative bacterial community of maize roots. Proc Natl Acad Sci USA. 2017;114:E2450–E2459.
Google Scholar
Zhuang L, Li Y, Wang Z, Yu Y, Zhang N, Yang C, et al. Synthetic community with six Pseudomonas strains screened from garlic rhizosphere microbiome promotes plant growth. Micro Biotechnol. 2021;14:488–502.
Google Scholar
Zobel S, Benedetti I, Eisenbach L, De Lorenzo V, Wierckx N, Blank LM. Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida. ACS Synth Biol. 2015;4:1341–51.
Google Scholar
Van Gestel J, Weissing FJ, Kuipers OP, Kovács ÁT. Density of founder cells affects spatial pattern formation and cooperation in Bacillus subtilis biofilms. ISME J. 2014;8:2069–79.
Google Scholar
Schneider CA, Rasband WS, Eliceiri KW. NIH Image to ImageJ: 25 years of image analysis. Nat Methods. 2012;9:671–5.
Google Scholar
Hmelo LR, Borlee BR, Almblad H, Love ME, Randall TE, Tseng BS, et al. Precision-engineering the Pseudomonas aeruginosa genome with two-step allelic exchange. Nat Protoc. 2015;10:1820–41.
Google Scholar
Yang L, Hengzhuang W, Wu H, Damkiær S, Jochumsen N, Song Z. et al. Polysaccharides serve as scaffold of biofilms formed by mucoid Pseudomonas aeruginosa. FEMS Immunol Med Microbiol. 2012;65:366–76.
Google Scholar
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