Benton MJ, Donoghue PCJ. Paleontological evidence to date the tree of life. Mol Biol Evol. 2006;24:26–53.
Google Scholar
Roll U, Feldman A, Novosolov M, Allison A, Bauer AM, Bernard R, et al. The global distribution of tetrapods reveals a need for targeted reptile conservation. Nat Ecol Evol. 2017;1:1677–82.
Google Scholar
IUCN, The IUCN Red List of Threatened Species. Version 2021-3. 2021.
Medicine, N.L.o., NCBI Genome. 2022, National Center for Biotechnology Information.
Hotaling S, Kelley JL, Frandsen PB. Toward a genome sequence for every animal: Where are we now? Proc Natl Acad Sci. 2021;118:e2109019118.
Google Scholar
Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, et al. The evolutionary history of vertebrate RNA viruses. Nature. 2018;556:197–202.
Google Scholar
Parry R, Wille M, Turnbull OMH, Geoghegan JL, Holmes EC. Divergent influenzalike viruses of amphibians and fish support an ancient evolutionary association. Viruses. 2020;12:1042.
Google Scholar
Peck KM, Lauring AS, Christopher S, Complexities of viral mutation rates. J Virol. 92: e01031-17.
Latney LV, Klaphake E. Selected emerging infectious diseases of amphibians. Vet Clin N Am—Exotic Animal Pract. 2020;23:397–412.
Zhang J, Finlaison DS, Frost MJ, Gestier S, Gu X, Hall J, et al. Identification of a novel nidovirus as a potential cause of large scale mortalities in the endangered Bellinger River snapping turtle (Myuchelys georgesi). PLOS ONE. 2018;13:e0205209.
Google Scholar
Parrish K, Kirkland PD, Skerratt LF, Ariel E. Nidoviruses in reptiles: a review. Front Vet Sci. 2021;8:733404.
Google Scholar
Chang WS, Li CX, Hall J, Eden JS, Hyndman TH, Holmes EC, et al. Metatranscriptomic discovery of a divergent circovirus and a chaphamaparvovirus in captive reptiles with proliferative respiratory syndrome. Viruses. 2020;12:1073.
Google Scholar
Mendoza-Roldan JA, Mendoza-Roldan MA, Otranto D. Reptile vector-borne diseases of zoonotic concern. Int J Parasitol: Parasites Wildl. 2021;15:132–42.
Essbauer S, Ahne W. Viruses of lower vertebrates. J Vet Med Ser B. 2001;48:403–75.
Mercer LK, Harding EF, Yan GJH, White PA. Novel viruses discovered in the transcriptomes of agnathan fish. J Fish Dis. 2022;45:931–8.
Google Scholar
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat biotechnol. 2011;29:644–52.
Google Scholar
Harding EF, Russo AG, Yan GJH, Waters PD, White PA. Ancient viral integrations in marsupials: a potential antiviral defence. Virus Evol. 2021;7:veab076.
Google Scholar
Buchfink B, Xie C, Huson DH. Fast and sensitive protein alignment using DIAMOND. Nat Methods. 2015;12:59–60.
Google Scholar
Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772–80.
Google Scholar
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312–3.
Google Scholar
Kelly AG, Netzler NE, White PA. Ancient recombination events and the origins of hepatitis E virus. BMC Evol Biol. 2016;16:210.
Google Scholar
Rector A, Van, Ranst M. Animal papillomaviruses. Virology. 2013;445:213–23.
Google Scholar
Blahak S, Jenckel M, Höper D, Beer M, Hoffmann B, Schlottau K. Investigations into the presence of nidoviruses in pythons. Virol J. 2020;17:6.
Google Scholar
Marschang RE. Viruses infecting reptiles. Viruses. 2011;3:2087–126.
Google Scholar
Horie M, Akashi H, Kawata M, Tomonaga K. Identification of a reptile lyssavirus in Anolis allogus provided novel insights into lyssavirus evolution. Virus Genes. 2021;57:40–49.
Google Scholar
Stenglein MD, Sanders C, Kistler AL, Ruby JG, Franco JY, Reavill DR, et al. Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease. mBio. 2012;3:e00180–12.
Google Scholar
Garver KA, Leskisenoja K, Macrae R, Hawley LM, Subramaniam K, Waltzek TB, et al. An alloherpesvirus infection of european perch perca fluviatilis in Finland. Dis Aquat Org. 2018;128:175–85.
Hellebuyck T, Couck L, Ducatelle R, Broeck WV, Marschang RE. Cheilitis associated with a novel herpesvirus in two panther chameleons (Furcifer pardalis). J Comp Pathol. 2021;182:58–66.
Google Scholar
Altan E, Kubiski SV, Burchell J, Bicknese E, Deng X, Delwart E. The first reptilian circovirus identified infects gut and liver tissues of black-headed pythons. Vet Res. 2019;50:35.
Google Scholar
Russo AG, Harding EF, Yan GJH, Selechnik D, Ducatez S, DeVore JL, et al. Discovery of novel viruses associated with the invasive cane toad (Rhinella marina) in its native and introduced ranges. Front Microbiol. 2021;12:733631.
Google Scholar
Chen X-X, Wu W-C, Shi M. Discovery and characterization of actively replicating DNA and retro-transcribing viruses in lower vertebrate hosts based on RNA sequencing. Viruses. 2021;13:1042.
Google Scholar
Russo AG, Eden JS, Tuipulotu DE, Shi M, Selechnik D, Shine R, et al. Viral discovery in the invasive Australian cane toad (Rhinella marina) using metatranscriptomic and genomic approaches. J Virol. 2018;92:e00768–18.
Google Scholar
López-Bueno A, Mavian C, Labella AM, Castro D, Borrego JJ, Alcami A, et al. Concurrence of Iridovirus, Polyomavirus, and a unique member of a new group of fish Papillomaviruses in Lymphocystis disease-affected gilthead sea bream. Journal of virology. 2016;90:8768–79.
Google Scholar
Bentley K, Evans DJ. Mechanisms and consequences of positive-strand RNA virus recombination. J Gen Virol. 2018;99:1345–56.
Google Scholar
Diemer GS, Stedman KM. A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biol Direct. 2012;7:13.
Google Scholar
Welch, NL, MJ Tisza, GJ Starrett, AK Belford, DV Pastrana, Y-YS Pang, et al. Identification of Adomavirus Virion proteins. bioRxiv. 2020:341131. https://doi.org/10.1101/341131
Dill JA, Camus AC, Leary JH, Ng TFF, Zheng Z-M, Meng X-J. Microscopic and Molecular Evidence of the First Elasmobranch Adomavirus, the Cause of Skin Disease in a Giant Guitarfish, Rhynchobatus djiddensis. mBio. 2018;9:e00185–18.
Google Scholar
Yang J-X, Chen X, Li Y-Y, Song T-Y, Ge J-Q. Isolation of a novel adomavirus from cultured American eels, Anguilla rostrata, with haemorrhagic gill necrosis disease. J Fish Dis. 2021;44:1811–8.
Google Scholar
King AMQ, Adams MJ, Carstens EB & Lefkowitz EJ, Order – Nidovirales, in virus taxonomy: classification and nomenclature of viruses. 2012, Elsevier/Academic Press: San Diego.
Lyu S, Yuan X, Zhang H, Shi W, Hang X, Liu L, et al. Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle. Arch Virol. 2019;164:2593–7.
Google Scholar
Sinzelle L, Carradec Q, Paillard E, Bronchain OJ, Pollet N. Characterization of a Xenopus tropicalis endogenous retrovirus with developmental and stress-dependent expression. J Virol. 2011;85:2167–79.
Google Scholar
Wei X, Chen Y, Duan G, Holmes EC, Cui J. A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses. Virus Evol. 2019;5:vez001.
Google Scholar
Debat HJ, Ng TFF. Complete genome sequence of a divergent strain of Tibetan frog hepatitis B virus associated with a concave-eared torrent frog (Odorrana tormota). Arch Virol. 2019;164:1727–32.
Google Scholar
Reuter G, Boros Á, Tóth Z, Gia Phan T, Delwart E, Pankovics P. A highly divergent picornavirus in an amphibian, the smooth newt (Lissotriton vulgaris). J Gen Virol. 2015;96:2607–13.
Google Scholar
ICTV. Subfamily: Secondpapillomavirinae. 2021 [cited 2022 15/06/2022]; Virus Taxonomy: 2021 Release:[Available from: https://talk.ictvonline.org/ictv-reports/ictv_online_report/dsdna-viruses/w/papillomaviridae/894/subfamilysecondpapillomavirinae.
Willemsen A, Bravo IG. Origin and evolution of papillomavirus (onco)genes and genomes. Philos Trans R Soc B: Biol Sci. 2019;374:20180303.
Agius JE, Phalen DN, Rose K, Eden J-S. New insights into Sauropsid Papillomaviridae evolution and epizootiology: discovery of two novel papillomaviruses in native and invasive Island geckos. Virus Evol. 2019;5:vez051.
Google Scholar
Bienentreu J-F, Lesbarrères D. Amphibian disease ecology: are we just scratching the surface? Herpetologica. 2020;76:153–66.
Mashkour N, Jones K, Wirth W, Burgess G, Ariel E. The concurrent detection of Chelonid Alphaherpesvirus 5 and Chelonia mydas Papillomavirus 1 in tumoured and non-tumoured green turtles. Animals. 2021;11:697.
Google Scholar
Hoon-Hanks LL, Layton ML, Ossiboff RJ, Parker JSL, Dubovi EJ, Stenglein MD. Respiratory disease in ball pythons (Python regius) experimentally infected with ball python nidovirus. Virology. 2018;517:77–87.
Google Scholar
Dervas E, Hepojoki J, Smura T, Prähauser B, Windbichler K, Blümich S, et al. Serpentoviruses: More than respiratory pathogens. J Virol. 2020;94:e00649–20.
Google Scholar
O’Dea MA, Jackson B, Jackson C, Xavier P, Warren K. Discovery and Partial Genomic Characterisation of a Novel Nidovirus Associated with Respiratory Disease in Wild Shingleback Lizards (Tiliqua rugosa). PloS One. 2016;11:e0165209.
Google Scholar
Dervas E, Hepojoki J, Laimbacher A, Romero-Palomo F, Jelinek C, Keller S, et al. Nidovirus-associated proliferative pneumonia in the green tree python (Morelia viridis). J Virol. 2017;91:e00718–17.
Google Scholar
Oberhuber M, Schopf A, Hennrich AA, Santos-Mandujano R, Huhn AG, Seitz S, et al. Glycoproteins of predicted amphibian and reptile lyssaviruses can mediate infection of mammalian and reptile cells. Viruses. 2021;13:1726.
Google Scholar
Ritchie BW, Niagro FD, Lukert PD, Steffens WL, Latimer KS. Characterization of a new virus from cockatoos with psittacine beak and feather disease. Virology. 1989;171:83–88.
Google Scholar
Eleni C, Corteggio A, Altamura G, Meoli R, Cocumelli C, Rossi G, et al. Detection of Papillomavirus DNA in cutaneous squamous cell carcinoma and multiple papillomas in captive reptiles. J Comp Pathol. 2017;157:23–26.
Google Scholar
Tessier TM, Dodge MJ, MacNeil KM, Evans AM, Prusinkiewicz MA, Mymryk JS. Almost famous: Human adenoviruses (and what they have taught us about cancer). Tumour. Virus Res. 2021;12:200225.
Chen XX, Wu WC, Shi M. Discovery and characterization of actively replicating dna and retro-transcribing viruses in lower vertebrate hosts based on rna sequencing. Viruses. 2021;13:1042.
Google Scholar
Liu W, Zhang Y, Ma J, Jiang N, Fan Y, Zhou Y, et al. Determination of a novel parvovirus pathogen associated with massive mortality in adult tilapia. PLOS Pathogens. 2020;16:e1008765.
Google Scholar
Source: Ecology - nature.com